The peroxidases and oxidases database
Entry information : SmedCMD
Entry ID 4570
Creation 2007-02-09 (Filippo Passardi)
Last sequence changes 2007-02-09 (Filippo Passardi)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2007-05-01 (Christophe Dunand)
Peroxidase information: SmedCMD
Name SmedCMD
Class Carboxymuconolactone decarboxylase (peroxidase activity)    [Orthogroup: CMD002]
Taxonomy Bacteria Proteobacteria Alphaproteobacteria Rhizobiaceae Sinorhizobium
Organism Sinorhizobium medicae    [TaxId: 110321 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmedCMD
start..stop		 S start..stop
SmeCMD 298 4e-106 1..153 1..153
RleCMD 252 7e-88 1..153 1..153
RetCMD 250 5e-87 1..153 1..153
AtuCMD 229 7e-79 1..153 1..153
Literature and cross-references SmedCMD
Literature Copeland,A., et al.

US DOE Joint Genome Institute (JGI-PGF)

Sequencing of the draft genome and assembly of Sinorhizobium
medicae WSM419

Unpublished
DNA sequence http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=AATG01000001&itemID=450&view=gbwithparts
Protein ref. GenPept:   EAU07322 UniProtKB_Uniparc:   Q0MNW5
Protein sequence: SmedCMD
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   153 (479)
PWM (Da):   %s   17027.68 (51231.8)  
PI (pH):   %s   7.11 (5.39) Peptide Signal:   %s   cut: 17 range:17-495
Sequence 0
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MQPRLNFAKA APEAYKAVAA LETYVKGSGI EPRLLHLIKL RASQINGCAY CVDMHSKEAR HSGLSEQWIN LVCVWRESPH FDERERAVLG WTEALTNVAE TRAPDHAYEA LRAHFDEEEM 
TKITVAIGTI NVWNRLCVGF RALPPIDAPA KAA 

Retrieve as FASTA  
Remarks Complete sequence from Genomic. Strain="WSM419".