The peroxidases and oxidases database
Entry information : PdeCMDn
Entry ID 4716
Creation 2007-02-22 (Filippo Passardi)
Last sequence changes 2007-02-22 (Filippo Passardi)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2010-05-06 (Christophe Dunand)
Peroxidase information: PdeCMDn
Name PdeCMDn
Class Carboxymuconolactone decarboxylase (no peroxidase activity)    [Orthogroup: CMDn002]
Taxonomy Bacteria Proteobacteria Alphaproteobacteria Rhodobacteraceae Paracoccus
Organism Paracoccus denitrificans    [TaxId: 266 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PdeCMDn
start..stop		 S start..stop
LveCMDn 185 5.88e-62 16..140 1..125
SagCMDn 177 7.56e-59 16..138 1..123
AauCMDn 123 3.11e-37 13..141 17..145
CsalHCMDn 127 3.3e-36 1..132 258..382
Literature and cross-references PdeCMDn
Literature Copeland A. et al. US DOE Joint Genome Institute. Complete sequence of Chromosome 2 of Paracoccus denitrificans PD1222.
Protein ref. GenPept:   ABL71562 UniProtKB:   A1B7R8
DNA ref. GenBank:   CP000490 (639003..639434)
Protein sequence: PdeCMDn
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   143
PWM (Da):   %s   15832.8  
PI (pH):   %s   5.53
Sequence 0
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MSDCPVPDHG VPDHPVPDRH ATGMKTRREV LGDTHVDRAE EQTSDLDRPF QDLITISAWG TVWASDGISR RERSMLTLAL LAATGNWEEI PMHIRATART GASRRDVVEA FQHVAIYCGV 
PRANHALKLA KQTFAEMEEE ESR 

Retrieve as FASTA  
Remarks Complete sequence from Genomic (Chromo 2). Strain="PD1222". This sequence is immediately preceded by an hydrolase. However, there is no fusion of the two proteins: a frameshift occurs that overlaps a few base pairs of the end of the hydrolase and the beginning of the CMD.