1. Browse the Database
  2. View Redoxidase
Entry information : PdeCMDn
Entry ID 4716
Creation 2007-02-22 (Filippo Passardi)
Last sequence changes 2007-02-22 (Filippo Passardi)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2010-05-06 (Christophe Dunand)
Peroxidase information: PdeCMDn
Name PdeCMDn
Class Carboxymuconolactone decarboxylase (no peroxidase activity)    [Orthogroup: CMDn002]
Taxonomy Bacteria Proteobacteria Alphaproteobacteria Rhodobacteraceae Paracoccus
Organism Paracoccus denitrificans    [TaxId: 266 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PdeCMDn
start..stop		 S start..stop
LveCMDn 185 5.99e-62 16..140 1..125
SagCMDn 177 7.7e-59 16..138 1..123
AauCMDn 123 3.17e-37 13..141 17..145
CsalHCMDn 127 3.37e-36 1..132 258..382
Literature and cross-references PdeCMDn
Literature Copeland A. et al. US DOE Joint Genome Institute. Complete sequence of Chromosome 2 of Paracoccus denitrificans PD1222.
Protein ref. GenPept:   ABL71562 UniProtKB:   A1B7R8
DNA ref. GenBank:   CP000490 (639003..639434)
Protein sequence: PdeCMDn
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   143
PWM (Da):   %s   15832.8  
PI (pH):   %s   5.53
Sequence
Send to BLAST
Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MSDCPVPDHG VPDHPVPDRH ATGMKTRREV LGDTHVDRAE EQTSDLDRPF QDLITISAWG TVWASDGISR RERSMLTLAL LAATGNWEEI PMHIRATART GASRRDVVEA FQHVAIYCGV 
PRANHALKLA KQTFAEMEEE ESR 

Retrieve as FASTA  
Remarks Complete sequence from Genomic (Chromo 2). Strain="PD1222". This sequence is immediately preceded by an hydrolase. However, there is no fusion of the two proteins: a frameshift occurs that overlaps a few base pairs of the end of the hydrolase and the beginning of the CMD.