Entry information : GmPrx03 (Glyma15g05650.1)
Entry ID 479
Creation 2006-08-29 (Christophe Dunand)
Last sequence changes 2006-08-29 (Christophe Dunand)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2011-12-13 (Qiang Li)
Peroxidase information: GmPrx03 (Glyma15g05650.1)
Name (synonym) GmPrx03 (Glyma15g05650.1)
Class Class III peroxidase    [Orthogroup: Prx015]
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Glycine
Organism Glycine max (soybean)    [TaxId: 3847 ]
Cellular localisation N/D
Tissue types Immature seed coats
Seed coats
Somatic embryos
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GmPrx03
start..stop
S start..stop
GmPrx172 626 0 1..323 1..324
LjPrx72 504 0 1..305 1..304
CclPrx116 487 3e-175 1..323 1..322
MtPrx21 481 7e-173 18..323 20..323
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 3980112..3980312 201 N° 2 3980493..3980675 183 N° 3 3980838..3981000 163 N° 4 3982662..3983086 425
join(3980112..3980312,3980493..3980675,3980838..3981000,3982662..3983086)


exon

Literature and cross-references GmPrx03 (Glyma15g05650.1)
Literature Harris,N. and Gijzen,M. Soybean peroxidase transcripts. Public Soybean EST Project.
Protein ref. UniProtKB:   Q9XFI7
DNA ref. Phytozome 12:   Gm15 (3980112..3983086)
Protein sequence: GmPrx03 (Glyma15g05650.1)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   323 (303)
PWM (Da):   %s   35033.73 (32826.6)  
PI (pH):   %s   5.19 (5.40) Peptide Signal:   %s   cut: 21 range:21-323
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MALFVLSLLFFSFLMGSSESQLQVGFYSNTCPQVDSIIRAVVRDAVLSDPNMAAVLLRLHFHDCFAQGCDGSILIENGPQSERHAFGHQGVRGFEVIERAKAQLEGSCPGLVSCADIVALAARDAVVMANGPAYQVPTGRRDGLVSNLSLADDMPDVSDSIELLKTKFLNKGLTVKDLVLLSGAHTIGTTACFFMTRRLYNFFPSGEGSDPAIRQNFLPRLKARCPQNGDVNIRLAIDEGSEQKFDINILKNIREGFAVLESDARLNDDIATKNVIDSYVSPFSPMFGPSFEADFVESVVKMGQIGVKTGFLGEIRRVCSAFN

Retrieve as FASTA  
Remarks Complete sequence from genomic and 9 ESTs.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGCTCTTTGTTTTGTCTCTCTTATTCTTCTCATTCTTAATGGGGAGTTCCGAGAGTCAGCTTCAAGTAGGTTTCTACTCCAACACATGTCCTCAAGTTGACTCCATTATCCGTGCC
GTTGTTAGAGACGCCGTTCTCTCTGACCCCAATATGGCGGCTGTCTTACTCAGACTTCATTTTCACGATTGCTTTGCTCAG
GTAATTGAGCTCTCTGTCTCTCTCTCTCTCTATGCATGT
ATATTAATAATATTTATTGTATAGCTAGCTTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGTTGATGTTTCTTTTTCATCCTTTTTTGTTTCTATTTGGT
GATACATATGGATTGGATCAGGGATGTGATGGTTCAATTCTGATTGAGAATGGTCCACAATCGGAGAGACATGCATTTGGACATCAGGGGGTTAGAGGGTTTGAAGTGATAGAAAGAGCA
AAGGCACAATTGGAAGGCTCTTGCCCCGGCTTGGTTTCTTGTGCAGACATAGTGGCTTTGGCAGCCAGAGACGCTGTAGTCATG
GTCCTAACTAACTTCATTATTAGTTAATTCATGCTT
TTTCTCTTGTTGCTCATATTTTTCTATATCTCTTAAAAAAAGTTACGTAAGATTCTACACAATATATGTTTATGTTTATGTTTGAAAGTGTTAGGATGAAATTTTATTTTATGTACATGC
ATGCAGGCAAATGGGCCAGCATATCAAGTTCCAACAGGGAGGAGAGATGGGTTGGTTTCCAATCTTTCGCTTGCAGATGACATGCCAGATGTTAGTGATTCGATTGAGCTACTCAAGACC
AAGTTTCTCAACAAAGGTCTCACAGTGAAAGACCTTGTTCTTCTTAGTG
GTACTCTCTCTCTCTCTCTCTTTCACACACACACACACAGCCCCCGAACACAAACAAAAGCACATACATCT
TTGTCATGCTGAATAGGTGAGATCATGGTTGTTGAGGAGGAAAAGTAATATGAACCTTGGCCATTACAAGACATTAGACATGCAATAGCTAAATTACCAAATATATGATATAACTGCTAC
ACTCCGCTTTAGAATACAATGAAAGCAAGTGAAGGAGTTCTGTTCCCAATTTGGAAAATAGATGGTGAAGTCCTGGGAATTATTCGTAGAGAAATTCTAATTATACAATAAATTTATATT
ACTTTTATAACAGAGAAAGACAGAAGTAAGATAAGAAGAAAGAGAAAGTGTGAGATAAGATGAGTGTGATGAAAAAGATAAAAATAAATAAATAAATTGTTGTATGAATTTGTTTTATGA
ATAGGATATCCTTTTGTTTAAATATAGGATATGAGATCATCAAATTTTAACAATATCTCTTCGATTTTGACAATTTTTCCGGATTCAAGAAACGTTGACATAACAACTACCTTTTTTATT
TATTAATAAAATTATAAAGCAATAGGGGTCTTAGTACCTAGGATTCTGAACAGTGCCATATGTTCCATCCATCCATTTAGGATAATGTTTGCTAAAAGGATCTATCACCTAGTAGATGTN
NNNNNNNNNNNNNNNNNNNNNNNNATGCGTGTGAGAGAACTTTGATTTGATTCATGTCATTGTGTATCAAATTCGATCAGTTGTAGTATGTTGTTTATTAATAATGAAAAATAAGATTGC
TAAAATATAAGTGGAGTATTTAATTTTACTAATAAAAAATTGTAATTGTAACAATAGGCTCCCCTTTGAGCTGTATTTCTCTGTGTGCTAGCTTTCGTTTCATTGGTTTGGTTTCACCTA
ATTCATTGACTGCCTAAACTTTCGTATCAAACCGAACGCAAAATCGTGGCATGCAGATGGCAGTTCTTATATTACAAATGGTGCACATGCAACGTTACAGTTGTAATCCATATTAATTGA
TATTGATAGAGATCAGTTTGCTTGTTTGTCCGATTCTCTTTATATATTTATTATTTTATACTTTCTGATTACTTGAGAACCTATTTACTGGATTTCTGGGAAAATAGCTGGGTGACGCTC
ACGACAGTGACAAATATAAGCTAGAGTAATATGAGCAAGTAAAGAAAACGGGCTTTTTTTTCGGGTAACTAAAGAAAATATACTAGCTACTTAATGTTATTAACAGAGTGAGACAATAAT
TTGGTTTCTCAAATTGAAAATACTAGTAATTAGTCTTTACTTTATATTATAATAAGGAAAAATTTATTCATTAACTATAGAGTTAATTTTTTTTTTGTTAGCAATGTCTCACGCAACTTG
TCAAGTATATATATTATGATCTACATGACAACTCAGTTAGAATGTGTTTGGGTTGCCGGTACCACAATCCAGTTTACGTTTTCAAAAGTAAGAAATATTAAAAGACATACTTTTGGATCT
AATATGGGTTCGGGGCCTTGGCATCGGTTTTCCAAACATCCATGTGTCACGAAAAGTATACTATTAAACTAAACTGGTGATGACTATGAAAGTTTAGAATTATTTACTTGTAATATTGTA
ATATTTTATTCATTTTTAAAATAATGTTAGGTGCACATACAATTGGAACCACAGCGTGCTTCTTTATGACCAGAAGACTGTACAACTTTTTCCCAAGTGGTGAGGGATCAGACCCAGCAA
TTAGACAAAACTTCCTCCCTCGGCTAAAGGCAAGGTGCCCTCAGAATGGAGATGTTAATATTCGCCTAGCTATTGATGAAGGGAGTGAGCAGAAATTTGACATAAACATTTTGAAGAACA
TAAGGGAAGGTTTTGCTGTGCTAGAATCTGATGCCAGACTCAATGATGACATAGCCACCAAGAATGTCATTGACTCCTACGTTTCTCCCTTCAGTCCAATGTTTGGGCCTTCTTTTGAAG
CTGATTTTGTTGAGTCAGTTGTGAAAATGGGCCAAATTGGTGTCAAGACAGGTTTCCTTGGAGAGATTAGGCGCGTGTGTTCAGCTTTTAATTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGCTCTTTGTTTTGTCTCTCTTATTCTTCTCATTCTTAATGGGGAGTTCCGAGAGTCAGCTTCAAGTAGGTTTCTACTCCAACACATGTCCTCAAGTTGACTCCATTATCCGTGCC
GTTGTTAGAGACGCCGTTCTCTCTGACCCCAATATGGCGGCTGTCTTACTCAGACTTCATTTTCACGATTGCTTTGCTCAG
GGATGTGATGGTTCAATTCTGATTGAGAATGGTCCACAA
TCGGAGAGACATGCATTTGGACATCAGGGGGTTAGAGGGTTTGAAGTGATAGAAAGAGCAAAGGCACAATTGGAAGGCTCTTGCCCCGGCTTGGTTTCTTGTGCAGACATAGTGGCTTTG
GCAGCCAGAGACGCTGTAGTCATG
GCAAATGGGCCAGCATATCAAGTTCCAACAGGGAGGAGAGATGGGTTGGTTTCCAATCTTTCGCTTGCAGATGACATGCCAGATGTTAGTGATTCG
ATTGAGCTACTCAAGACCAAGTTTCTCAACAAAGGTCTCACAGTGAAAGACCTTGTTCTTCTTAGTG
GTGCACATACAATTGGAACCACAGCGTGCTTCTTTATGACCAGAAGACTGTAC
AACTTTTTCCCAAGTGGTGAGGGATCAGACCCAGCAATTAGACAAAACTTCCTCCCTCGGCTAAAGGCAAGGTGCCCTCAGAATGGAGATGTTAATATTCGCCTAGCTATTGATGAAGGG
AGTGAGCAGAAATTTGACATAAACATTTTGAAGAACATAAGGGAAGGTTTTGCTGTGCTAGAATCTGATGCCAGACTCAATGATGACATAGCCACCAAGAATGTCATTGACTCCTACGTT
TCTCCCTTCAGTCCAATGTTTGGGCCTTCTTTTGAAGCTGATTTTGTTGAGTCAGTTGTGAAAATGGGCCAAATTGGTGTCAAGACAGGTTTCCTTGGAGAGATTAGGCGCGTGTGTTCA
GCTTTTAATTGA

Retrieve as FASTA