RedOxiBase: View Perox 479

Entry information : GmPrx03 (Glyma15g05650.1)

Entry ID	479
Creation	2006-08-29 (Christophe Dunand)
Last sequence changes	2006-08-29 (Christophe Dunand)
Sequence status	complete
Reviewer	Qiang Li
Last annotation changes	2011-12-13 (Qiang Li)

Peroxidase information: GmPrx03 (Glyma15g05650.1)

Name (synonym)

GmPrx03 (Glyma15g05650.1)

Class

Class III peroxidase [Orthogroup: Prx015]

Taxonomy

Eukaryota Viridiplantae Streptophyta Fabaceae Glycine

Organism

Glycine max (soybean) [TaxId: 3847 ]

Cellular localisation

N/D

Tissue types

Immature seed coats
Seed coats
Somatic embryos

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	GmPrx03 start..stop	S start..stop
GmPrx172	626	0	1..323	1..324
LjPrx72	504	0	1..305	1..304
CclPrx116	487	4e-175	1..323	1..322
MtPrx21	481	8e-173	18..323	20..323

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	3980112..3980312	201	N° 2	3980493..3980675	183	N° 3	3980838..3981000	163	N° 4	3982662..3983086	425
join(3980112..3980312,3980493..3980675,3980838..3981000,3982662..3983086)

Literature and cross-references GmPrx03 (Glyma15g05650.1)

Literature	Harris,N. and Gijzen,M. Soybean peroxidase transcripts. Public Soybean EST Project.
Protein ref.	UniProtKB: Q9XFI7
DNA ref.	Phytozome 12: Gm15 (3980112..3983086)

Protein sequence: GmPrx03 (Glyma15g05650.1)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	323 (303)
PWM (Da):	35033.73 (32826.6)
PI (pH):	5.19 (5.40)	Peptide Signal:	cut: 21 range:21-323

Sequence 484
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MALFVLSLLFFSFLMGSSESQLQVGFYSNTCPQVDSIIRAVVRDAVLSDPNMAAVLLRLHFHDCFAQGCDGSILIENGPQSERHAFGHQGVRGFEVIERAKAQLEGSCPGLVSCADIVALAARDAVVMANGPAYQVPTGRRDGLVSNLSLADDMPDVSDSIELLKTKFLNKGLTVKDLVLLSGAHTIGTTACFFMTRRLYNFFPSGEGSDPAIRQNFLPRLKARCPQNGDVNIRLAIDEGSEQKFDINILKNIREGFAVLESDARLNDDIATKNVIDSYVSPFSPMFGPSFEADFVESVVKMGQIGVKTGFLGEIRRVCSAFN

Retrieve as FASTA

Remarks

Complete sequence from genomic and 9 ESTs.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCGCTCTTTGTTTTGTCTCTCTTATTCTTCTCATTCTTAATGGGGAGTTCCGAGAGTCAGCTTCAAGTAGGTTTCTACTCCAACACATGTCCTCAAGTTGACTCCATTATCCGTGCC
GTTGTTAGAGACGCCGTTCTCTCTGACCCCAATATGGCGGCTGTCTTACTCAGACTTCATTTTCACGATTGCTTTGCTCAGGTAATTGAGCTCTCTGTCTCTCTCTCTCTCTATGCATGT
ATATTAATAATATTTATTGTATAGCTAGCTTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGTTGATGTTTCTTTTTCATCCTTTTTTGTTTCTATTTGGT
GATACATATGGATTGGATCAGGGATGTGATGGTTCAATTCTGATTGAGAATGGTCCACAATCGGAGAGACATGCATTTGGACATCAGGGGGTTAGAGGGTTTGAAGTGATAGAAAGAGCA
AAGGCACAATTGGAAGGCTCTTGCCCCGGCTTGGTTTCTTGTGCAGACATAGTGGCTTTGGCAGCCAGAGACGCTGTAGTCATGGTCCTAACTAACTTCATTATTAGTTAATTCATGCTT
TTTCTCTTGTTGCTCATATTTTTCTATATCTCTTAAAAAAAGTTACGTAAGATTCTACACAATATATGTTTATGTTTATGTTTGAAAGTGTTAGGATGAAATTTTATTTTATGTACATGC
ATGCAGGCAAATGGGCCAGCATATCAAGTTCCAACAGGGAGGAGAGATGGGTTGGTTTCCAATCTTTCGCTTGCAGATGACATGCCAGATGTTAGTGATTCGATTGAGCTACTCAAGACC
AAGTTTCTCAACAAAGGTCTCACAGTGAAAGACCTTGTTCTTCTTAGTGGTACTCTCTCTCTCTCTCTCTTTCACACACACACACACAGCCCCCGAACACAAACAAAAGCACATACATCT
TTGTCATGCTGAATAGGTGAGATCATGGTTGTTGAGGAGGAAAAGTAATATGAACCTTGGCCATTACAAGACATTAGACATGCAATAGCTAAATTACCAAATATATGATATAACTGCTAC
ACTCCGCTTTAGAATACAATGAAAGCAAGTGAAGGAGTTCTGTTCCCAATTTGGAAAATAGATGGTGAAGTCCTGGGAATTATTCGTAGAGAAATTCTAATTATACAATAAATTTATATT
ACTTTTATAACAGAGAAAGACAGAAGTAAGATAAGAAGAAAGAGAAAGTGTGAGATAAGATGAGTGTGATGAAAAAGATAAAAATAAATAAATAAATTGTTGTATGAATTTGTTTTATGA
ATAGGATATCCTTTTGTTTAAATATAGGATATGAGATCATCAAATTTTAACAATATCTCTTCGATTTTGACAATTTTTCCGGATTCAAGAAACGTTGACATAACAACTACCTTTTTTATT
TATTAATAAAATTATAAAGCAATAGGGGTCTTAGTACCTAGGATTCTGAACAGTGCCATATGTTCCATCCATCCATTTAGGATAATGTTTGCTAAAAGGATCTATCACCTAGTAGATGTN
NNNNNNNNNNNNNNNNNNNNNNNNATGCGTGTGAGAGAACTTTGATTTGATTCATGTCATTGTGTATCAAATTCGATCAGTTGTAGTATGTTGTTTATTAATAATGAAAAATAAGATTGC
TAAAATATAAGTGGAGTATTTAATTTTACTAATAAAAAATTGTAATTGTAACAATAGGCTCCCCTTTGAGCTGTATTTCTCTGTGTGCTAGCTTTCGTTTCATTGGTTTGGTTTCACCTA
ATTCATTGACTGCCTAAACTTTCGTATCAAACCGAACGCAAAATCGTGGCATGCAGATGGCAGTTCTTATATTACAAATGGTGCACATGCAACGTTACAGTTGTAATCCATATTAATTGA
TATTGATAGAGATCAGTTTGCTTGTTTGTCCGATTCTCTTTATATATTTATTATTTTATACTTTCTGATTACTTGAGAACCTATTTACTGGATTTCTGGGAAAATAGCTGGGTGACGCTC
ACGACAGTGACAAATATAAGCTAGAGTAATATGAGCAAGTAAAGAAAACGGGCTTTTTTTTCGGGTAACTAAAGAAAATATACTAGCTACTTAATGTTATTAACAGAGTGAGACAATAAT
TTGGTTTCTCAAATTGAAAATACTAGTAATTAGTCTTTACTTTATATTATAATAAGGAAAAATTTATTCATTAACTATAGAGTTAATTTTTTTTTTGTTAGCAATGTCTCACGCAACTTG
TCAAGTATATATATTATGATCTACATGACAACTCAGTTAGAATGTGTTTGGGTTGCCGGTACCACAATCCAGTTTACGTTTTCAAAAGTAAGAAATATTAAAAGACATACTTTTGGATCT
AATATGGGTTCGGGGCCTTGGCATCGGTTTTCCAAACATCCATGTGTCACGAAAAGTATACTATTAAACTAAACTGGTGATGACTATGAAAGTTTAGAATTATTTACTTGTAATATTGTA
ATATTTTATTCATTTTTAAAATAATGTTAGGTGCACATACAATTGGAACCACAGCGTGCTTCTTTATGACCAGAAGACTGTACAACTTTTTCCCAAGTGGTGAGGGATCAGACCCAGCAA
TTAGACAAAACTTCCTCCCTCGGCTAAAGGCAAGGTGCCCTCAGAATGGAGATGTTAATATTCGCCTAGCTATTGATGAAGGGAGTGAGCAGAAATTTGACATAAACATTTTGAAGAACA
TAAGGGAAGGTTTTGCTGTGCTAGAATCTGATGCCAGACTCAATGATGACATAGCCACCAAGAATGTCATTGACTCCTACGTTTCTCCCTTCAGTCCAATGTTTGGGCCTTCTTTTGAAG
CTGATTTTGTTGAGTCAGTTGTGAAAATGGGCCAAATTGGTGTCAAGACAGGTTTCCTTGGAGAGATTAGGCGCGTGTGTTCAGCTTTTAATTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA