View Redoxidase 485

Entry information : GmPrx17 (Glyma02g15280.1)

Entry ID	485
Creation	2005-06-21 (Christophe Dunand)
Last sequence changes	2011-10-07 (Qiang Li)
Sequence status	complete
Reviewer	Christophe Dunand
Last annotation changes	2011-12-13 (Qiang Li)

Peroxidase information: GmPrx17 (Glyma02g15280.1)

Name (synonym)

GmPrx17 (Glyma02g15280.1)

Class

Class III peroxidase [Orthogroup: Prx024]

Taxonomy

Eukaryota Viridiplantae Streptophyta Fabaceae Glycine

Organism

Glycine max (soybean) [TaxId: 3847 ]

Cellular localisation

N/D

Tissue types

Germinating shoots
Leaves
Roots

Inducers

Cyst nematode infection
Pathogen interaction

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	GmPrx17 start..stop	S start..stop
GmPrx163	643	0	1..338	1..338
GmPrx60	501	2.28e-180	12..338	1..332
PpePrx08	467	6.24e-167	1..337	1..332
RcPrx31	446	1.04e-158	1..338	1..336

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '485' 'complement(join(13785775..13786187,13786624..13786789,13786918..13787109,13788165..13788410))'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	13788165..13788410	244	N° 2	13786918..13787109	190	N° 3	13786624..13786789	164	N° 4	13785775..13786187	411
complement(join(13785775..13786187,13786624..13786789,13786918..13787109,1378816 5..13788410))

Literature and cross-references GmPrx17 (Glyma02g15280.1)

Literature	Public Soybean EST Project. Wang,G. et al. Transcriptionally regulated genes of early response to soybean cyst nematode's infection in resistant soybean PI 437654.
DNA ref.	Phytozome 12: Gm02 (13788410..13785775)

Protein sequence: GmPrx17 (Glyma02g15280.1)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	338 (313)
PWM (Da):	37856.71 (34799.2)	Transmb domain:	i5-27o
PI (pH):	6.04 (5.41)	Peptide Signal:	cut: 26 range:26-338

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MTCKLVIYFTFFFCLLFTLVPYVHMYPSYPYSGNYQLDLNFYDRS
CPNLQRIVGYGVWLALKNDNRMAASLLRLHFHDCIVNGCDASVLLDDTPYFTGEKNALPNRNSLRGFEVIDDIKEHLERICPSTVSCADILALAAREAIDQIGGPSWQVQLGRRDATTTSKEAAEQQIPSPIEPLENITAKFFSKGLDMKDVVALSG
AHTIGFARCFTFKGRLFDFQGSGRPDPALDFSLLSKLQNTCPNEDASNSNLAPLDATSTMMFDNEYYRNIVYNTALLESDQALLKDRRTAPTVYYYSNNRFSFYNDFAKSMVKLSNVGVL
TGAEGQIRYKCGSVNY

Retrieve as FASTA

Remarks

Complete sequence from genomic and 14 ESTs.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGACTTGTAAACTTGTGATCTACTTCACTTTCTTCTTCTGCTTGCTTTTTACCTTGGTTCCTTATGTTCATATGTATCCCTCGTACCCCTATAGTGGAAATTACCAGCTTGACCTCAAT
TTCTATGATAGATCATGCCCAAATTTGCAAAGGATTGTTGGATATGGTGTTTGGTTAGCCTTAAAAAATGACAACAGAATGGCCGCGTCCCTCCTTCGGTTGCACTTTCACGATTGCATA
GTAAATGTAAATTTTGTTCTGCTTTAATTAGGATTTTCTTATTTCTTACACTTCAAAATGAACAACACACGTACTTAATTTGCATGGCTTTATATGTCTTTCCGTCAGACTCTAAATCAT
ACTAGATCACACTAATTAGTAGTTGTTGGAGGAATTTTCATAAATATAAATGATAGTTTTGATGATAGAAGCATGTTGTTAATTGATTGACTCTAGAAATATATTAGTTGAATAAATACT
TGAACGTGTTATAATTGGTCCTTATCCACAAAAATTTATTCCCACTACTTGGGCACTTTGGCCCCTTGCTACCTTCCCGTTCCTATATCTATATTTGTTTTATGAACATTAGGTAGACAC
AACACATTAAATCTAGAAACTTAGTTTTCCTTATTAACTCAATTAATAAGAACGGATCACATACACGTGCATAGATATAGATTTGAAATGGGTTAGATCAGACTACTTAAGATTATTTTT
TTTATACCGGGGAGGGGCAGAGCCCCTAGATTTATTTCTAACTTCTAACACATTTGGAATTTTATTGTGGTGGAAATCTTTGTGTGACTGGACATACAGGAGAAAAAGAAAAAGTGAAAC
GTGATAATAAAATGTGGTAGGAAAGAAAAATGGAGTGAAAAAAAAAAGTTGTATGATAATAATAACTCATTTTTTTTTACACAATAATAACAGTTTTACCCTCATTCAATCACAATTTAT
CATTAATATGAGTTTTAAGATAATTATTATAAAAATTAATAAATTTATCATTTATTATAGTTTGTGATTGATCAAACAACAATGTATGTTAGTGCATAATGTTCTCATATAATTAAACTT
AATCCGTTTCCCTTTCCACCGTCTCTCATAAGCTTTAGTTATACTTTAGTGCATAATTTTGAAGGTTATATGTATTGTATATTATCACATTTGTAATTAACCCTCTTTTTTATTTTTGTT
TACATTACATAAGTAATTATCACATTTAGTATATGCTACTAAAATCATAATAACTTATACGGGGAAGTCATTAATTATTTTCAATTGCTTGTCAAATTAAGGGGGCTGTGATGCTTCTGT
ACTTCTTGATGATACACCATATTTTACGGGCGAAAAGAATGCTCTTCCTAATCGCAATTCACTTCGGGGGTTTGAAGTCATTGATGACATAAAAGAACATCTTGAAAGGATATGTCCATC
AACAGTTTCCTGCGCTGATATATTAGCCTTAGCAGCTAGGGAAGCTATTGATCAGGTAAAAGTGACACTTCCTTTAAAGTATTGGACACATATTGTCTCAACTGAAAGTTCCTTTATTAA
TCAACCTATTTGATTTAACTAACGTTGTTGTTGAATCTTCCCCTATGTTTTGGGGTGTTTTAGATATTGGAGGGCCTTCTTGGCAAGTTCAATTAGGCCGAAGAGATGCAACAACAACAA
GTAAGGAAGCAGCTGAGCAACAAATTCCCTCACCAATTGAGCCTCTAGAAAACATTACTGCAAAGTTTTTCTCCAAGGGTCTTGACATGAAGGATGTCGTAGCCCTTTCAGGTTTTTACT
CTTTTCTCACCTTTCTCTAACTTCATTTAGAATACACAAATACTAACTAGCATCTTAAATAAAAAAATTTCAATAAAAATTGGTATTAATATACATGTATTGTGATTTCCAATGCATTTC
AAATGTGAACTTCGTAATAGGATACTGGTTAAGAAGACTATTTAGAATATATATCATTCTAATTTTATGAAGTAATAGAAACTAACTTCAACTTTCACTAAATATCTTAAGCTCTTTTTA
GTATATGACTATGATGACATCATATATTGTTAAATGATCAAATCTGATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCA
ATTCACTGCTAGATCAACTTTATATCTCAATTTGACATGAATAACTTTATGTGTCTATTTTCATCAGGAGAGCACATACAATTGGTTTTGCCCGATGCTTCACCTTCAAAGGGAGACTTT
TCGACTTTCAAGGGTCTGGCAGACCTGATCCCGCGCTTGACTTCTCACTTCTCTCAAAATTGCAAAACACTTGTCCAAATGAAGATGCTTCAAACAGCAATCTAGCACCTCTTGATGCTA
CAAGTACTATGATGTTTGACAATGAGTATTATAGAAATATCGTATACAACACAGCGCTTCTAGAATCTGACCAAGCACTACTTAAGGATCGAAGGACTGCTCCTACGGTTTATTATTACA
GCAACAACCGGTTTTCCTTCTACAATGATTTTGCCAAATCCATGGTGAAGCTTAGTAATGTAGGAGTACTTACAGGAGCAGAAGGGCAAATTAGATATAAATGTGGCTCTGTAAACTATT
GA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA