Entry information : Ha1CysPrx (HanXRQChr07g0194341)
Entry ID 4955
Creation 2010-05-26 (Christophe Dunand)
Last sequence changes 2016-05-10 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2017-11-23 (Catherine Mathe (Scipio))
Peroxidase information: Ha1CysPrx (HanXRQChr07g0194341)
Name (synonym) Ha1CysPrx (HanXRQChr07g0194341)
Class 1-Cysteine peroxiredoxin    [Orthogroup: 1CysPrx001]
Taxonomy Eukaryota Viridiplantae Streptophyta Asteraceae Helianthus
Organism Helianthus annuus (Sunflower)    [TaxId: 4232 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value Ha1CysPrx
start..stop
S start..stop
Le1CysPrx01 386 9.32e-139 1..219 1..219
Vv1CysPrx 385 2.88e-138 1..219 1..219
Nt1CysPrx01 375 1.69e-134 1..219 1..216
Egu1CysPrx03 366 5.82e-131 1..219 1..219
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '4955' 'complement(join(58052280..58052525,58052600..58052746,58052840..58052988,58053058..58053175))' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 58053058..58053175 116 N° 2 58052840..58052988 147 N° 3 58052600..58052746 145 N° 4 58052280..58052525 244
complement(join(58052280..58052525,58052600..58052746,58052840..58052988,5805305 8..58053175))


exon

Literature and cross-references Ha1CysPrx (HanXRQChr07g0194341)
Literature Liu,A. and Burke,J.M. Patterns of Nucleotide Diversity in Wild and Cultivated Sunflower. Unpublished. Submitted (20-APR-2006)
Protein ref. UniProtKB:   Q15CL7
DNA ref. HanXRQ genome:   HanXRQChr07 (58053175..58052280)
Cluster/Prediction ref. UniGene:   Han.2357
Protein sequence: Ha1CysPrx (HanXRQChr07g0194341)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   219
PWM (Da):   %s   24039.29  
PI (pH):   %s   6.8
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MPGLTIGDSLPNLQVDTTHGKINLHDYVGDSFTIIFSHPGDFTPVCTTELGAMAAYADKFAQRGVKLLGLSCDDVQSHKEWIKDIEAYKGKKVTYPIAADPNREIIKQLNMVDPDEKDAS
GQNLPSRALHIVGPDKK
IKLSFLYPASTGRNMDEVVRALDSLIKASQHKIATPVNWKEGEPVVIAPSVSNDEARKMFPKGFQTVDLPSNKDYLRFTSV*

Retrieve as FASTA  
Remarks Complete sequence from Genomic (3 introns) and 25 ESTs. Isolate="HIDATSA1" and "HIDATSA2", cultivar="RHA801". "A" added at position 16 of cDNA (based on other homologs).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCCTGGCCTAACCATCGGAGACTCCCTCCCCAACCTCCAAGTTGACACCACTCATGGCAAGATCAATCTGCATGACTATGTTGGCGACTCATTCACCATCATCTTCTCTCACCCTGGT
TCGTCTTTTCCTTTCCCTTTGAAATAACAATTCATATCATATATTTTTCAAGTTGAAAATAGTGCAGGTGTGACTTCACGCCTGTTTGCACGACCGAGCTGGGGGCGATGGCGGCATACG
CTGACAAGTTTGCCCAGAGGGGTGTGAAGCTGTTGGGGTTATCCTGTGATGATGTCCAGTCTCACAAGGAGTGGATCAAAGATATTGAAGCCTATAAC
GTATGTATATGTATATGTATAT
GTATATGTATATGTATATGTATACTCATCAATCAAAACCTACCTGTTAATACTATTGTGATGTTGGTGCAGAAAAGGGAAAGAAGGTGACGTACCCGATCGCTGCTGATCCCAACCGGGA
GATCATCAAGCAGCTCAACATGGTGGATCCTGATGAGAAAGATGCTTCTGGACAGAACCTCCCCTCTCGTGCTCTGCACATTGTTGGCCCCGACAAAAAG
GTACTATATGATATTGTTTG
AAAAGTGTGTATATATATAAATATATATGTTGATGAATGGATCGTGTTGTGTAGATATAAAGTTGAGCTTCCTGTATCCTGCGAGCACGGGAAGGAACATGGACGAGGTGGTGAGGGCGC
TGGACTCCTTGATCAAGGCTTCCCAGCACAAAATAGCCACTCCGGTCAACTGGAAGGAGGGTGAACCAGTTGTCATCGCTCCCAGCGTCTCCAACGATGAGGCCAGGAAAATGTTTCCCA
AGGGCTTTCAGACAGTTGATCTCCCATCCAACAAGGACTATCTTCGTTTTACTAGTGTTTAG

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCCTGGCCTAACCATCGGAGACTCCCTCCCCAACCTCCAAGTTGACACCACTCATGGCAAGATCAATCTGCATGACTATGTTGGCGACTCATTCACCATCATCTTCTCTCACCCTGGT
GACTTCACGCCTGTTTGCACGACCGAGCTGGGGGCGATGGCGGCATACGCTGACAAGTTTGCCCAGAGGGGTGTGAAGCTGTTGGGGTTATCCTGTGATGATGTCCAGTCTCACAAGGAG
TGGATCAAAGATATTGAAGCCTATAAC
AAGGGAAAGAAGGTGACGTACCCGATCGCTGCTGATCCCAACCGGGAGATCATCAAGCAGCTCAACATGGTGGATCCTGATGAGAAAGATGCT
TCTGGACAGAACCTCCCCTCTCGTGCTCTGCACATTGTTGGCCCCGACAAAAAG
ATAAAGTTGAGCTTCCTGTATCCTGCGAGCACGGGAAGGAACATGGACGAGGTGGTGAGGGCGCTG
GACTCCTTGATCAAGGCTTCCCAGCACAAAATAGCCACTCCGGTCAACTGGAAGGAGGGTGAACCAGTTGTCATCGCTCCCAGCGTCTCCAACGATGAGGCCAGGAAAATGTTTCCCAAG
GGCTTTCAGACAGTTGATCTCCCATCCAACAAGGACTATCTTCGTTTTACTAGTGTTTAG

Retrieve as FASTA  
cDNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ACAAATGCCT GGCCTAACCA TCGGAGACTC CCTCCCCAAC CTCCAAGTTG ACACCACTCA TGGCAAGATC AATCTGCATG ACTATGTTGG CGACTCATTC ACCATCATCT TCTCTCACCC  TGGTGACTTC ACGCCTGTTT GCACGACCGA GCTGGGGGCG ATGGCGGCAT ACGCTGACAA GTTTGCCCAG AGGGGTGTGA AGCTGTTGGG GTTATCCTGT GATGATGTCC AGTCTCACAA  GGAGTGGATC AAAGATATTG AAGCCTATAA CAAGGGAAAG AAGGTGACGT ACCCGATCGC TGCTGATCCC AACCGGGAGA TCATCAAGCA GCTCAACATG GTGGATCCTG ATGAGAAAGA  TGCTTCTGGA CAGAACCTCC CCTCTCGTGC TCTGCACATT GTTGGCCCCG ACAAAAAGAT AAAGTTGAGC TTCCTGTATC CTGCGAGCAC GGGAAGGAAC ATGGACGAGG TGGTGAGGGC  GCTGGACTCC TTGATCAAGG CTTCCCAGCA CAAAATAGCC ACTCCGGTCA ACTGGAAGGA GGGTGAACCA GTTGTCATCG CTCCCAGCGT CTCCAACGAT GAGGCCAGGA AAATGTTTCC  CAAGGGCTTT CAGACAGTTG ATCTCCCATC CAACAAGGAC TATCTTCGTT TTACTAGTGT TTAGAACCTA GCTACCTTnC ATATAATAAT AATAATATGA AATAACAAAC TTTCTATGCA 
TGCATACGTT TGACTTTATT ACTTAT 

Retrieve as FASTA