View Redoxidase 5130

Entry information : VvPrxII05 (VvPrxIIE)

Entry ID	5130
Creation	2007-04-06 (Christophe Dunand)
Last sequence changes	2011-11-25 (Qiang LI)
Sequence status	complete
Reviewer	Marcel Zamocky
Last annotation changes	2011-11-25 (Qiang LI)

Peroxidase information: VvPrxII05 (VvPrxIIE)

Name (synonym)

VvPrxII05 (VvPrxIIE)

Class

Atypical 2-Cysteine peroxiredoxin (type II) [Orthogroup: PrxII001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Vitaceae Vitis

Organism

Vitis vinifera (Grape) [TaxId: 29760 ]

Cellular localisation

N/D

Tissue types

Berries
Buds
Inflorescences
Leaves
Roots
Seeds
Stems

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	VvPrxII05 start..stop	S start..stop
HaPrxII01	314	1.34e-110	1..210	1..204
PtPrxII05	311	3.96e-109	1..212	1..218
PtrtrPrxII05	308	6.75e-108	1..212	1..218
PtremPrxII05	308	7.21e-108	1..212	1..218

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '5130' 'join(17991901..17992539)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	17991901..17992539	637
join(17991901..17992539)

Literature and cross-references VvPrxII05 (VvPrxIIE)

Literature	REFERENCE 1 Velasco,R., et al., The first genome sequence of an elite grapevine cultivar (Pinot noir Vitis vinifera L.): coping with a highly heterozygous genome. REFERENCE 2 Reid,K.E., Liao,N., Peng,F., Schlosser,J., Kirkpatrick,R., Shukin ,R., Barber,S., Holt,R., Siddiqui,A., Jones,S., Marra,M., Bowen,P., Bohlmann,J., Martinez Zapater,J.M. and Lund,S.T. Expressed sequence tags from grapevine (Vitis vinifera cv. Cabernet Sauvignon)
DNA ref.	Phytozome 12: chr8 (17991901..17992539)
Cluster/Prediction ref.	UniGene: Vvi.11050

Protein sequence: VvPrxII05 (VvPrxIIE)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	212
PWM (Da):	22383.73
PI (pH):	8.05

Sequence
Send to BLAST
Send to Peroxiscan

*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

MATTLTMARL LSSAKSLSFS SSASALFPPA SLSLKLRHPK PLRFSTAISA TIAVGDKLPE STFSYFDSAG ELQTTTVSDL TKGKKAILFA VPGAFTPTCS QKHLPGFVEK SGELKSKGVE
TIACISVNDA FVMKAWKADL KIEDQVLLLS DGNGDFTKAI GCELDLSDKP VGLGVRSRRY AMLVDDGVVK VLNLEEGGAF TFSGAEDILK LL

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 8, intronless) and 52 ESTs. Cultivar="Pinot Noir", "Cabernet Sauvignon", "PN40024" and "Muscat Hamburg".

DNA ►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

ATGGCAACCA CCCTAACAAT GGCCAGGCTT CTCTCTTCCG CCAAATCCCT TTCTTTCTCT TCTTCCGCAT CTGCCCTTTT CCCACCCGCT TCCCTCTCCC TCAAACTCCG CCACCCTAAG CCCCTCAGAT TCTCCACCGC CATCTCCGCT ACCATCGCCG TCGGTGACAA GCTCCCAGAA TCCACCTTCT CCTACTTCGA CTCCGCCGGC GAGCTCCAGA CCACCACCGT CTCCGACCTC ACCAAGGGCA AGAAAGCCAT CCTCTTTGCC GTCCCCGGCG CCTTCACCCC CACTTGCTCC CAGAAACACC TCCCCGGCTT CGTTGAAAAG TCCGGCGAGC TCAAGTCAAA AGGGGTCGAA ACCATCGCCT GCATCTCCGT CAACGACGCC TTCGTCATGA AGGCTTGGAA GGCCGACTTG AAGATCGAGG ACCAAGTGCT CCTGTTGTCG GATGGAAATG GGGACTTCAC CAAAGCTATT GGGTGCGAGC TCGATCTCAG CGACAAGCCT GTGGGTCTGG GAGTGAGGTC GAGGCGTTAC GCCATGTTGG TGGACGATGG AGTTGTCAAG GTCTTGAATT TGGAGGAGGG CGGTGCGTTT
ACGTTCAGTG GCGCCGAGGA TATCCTCAAA CTTCTCTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

Retrieve as FASTA