Entry information : PtDiOx01 (POPTR_0008s10590 / Potri.008G106400)
| Entry ID | 5158 |
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| Creation | 2007-04-08 (Christophe Dunand) |
| Last sequence changes | 2010-07-08 (Marie Brette (Scipio)) |
| Sequence status | complete |
| Reviewer | Qiang Li |
| Last annotation changes | 2012-03-08 (Qiang Li) |
Peroxidase information: PtDiOx01 (POPTR_0008s10590 / Potri.008G106400)
| Name (synonym) | PtDiOx01 (POPTR_0008s10590 / Potri.008G106400) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Class | Alpha-dioxygenase [Orthogroup: DiOx001] | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Taxonomy | Eukaryota Viridiplantae Streptophyta Salicaceae Populus | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Organism | Populus trichocarpa (Western balsam poplar) [TaxId: 3694 ] | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Cellular localisation | N/D |
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| Tissue types | Buds Leaves |
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| Inducer | N/D |
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| Repressor | N/D |
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| Best BLASTp hits |
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| Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '5158' 'join(6633262..6633381,6633466..6633729,6633980..6634129,6634232..6634365,6634950..6635163,6635282..6635427,6635551..6635778,6636481..6636683,6636997..6637240,6637692..6637917)' |
Exons►
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Literature and cross-references PtDiOx01 (POPTR_0008s10590 / Potri.008G106400)
| Literature | REFERENCE 1; DOE Joint Genome Institute and Stanford Human Genome Center. Direct Submission.
REFERENCE 2; Ralph,S. et al:, Genomics of hybrid poplar (Populus trichocarpax deltoides) interacting with forest tent caterpillars (Malacosoma disstria): normalized and full-length cDNA libraries, expressed sequence tags, and a cDNA microarray for the study of insect-induced defences. Mol. Ecol. 15 (5), 1275-1297 (2006). |
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| Protein ref. | UniProtKB: A9PFX6 [Fragment] |
| DNA ref. | Phytozome 12: scaffold_8 (6633262..6637917) |
| mRNA ref. | GenBank: EF147254 [Fragment] |
| Cluster/Prediction ref. | UniGene: Pth.9070 |
| Omic ref. | ePlant: Potri.008G106400 |
Protein sequence: PtDiOx01 (POPTR_0008s10590 / Potri.008G106400)
| Sequence Properties first value : protein second value (mature protein) |
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| Sequence Send to BLAST Send to Peroxiscan |
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| Remarks | Complete sequence from genomic (9 introns), 1 mRNA and 6 ESTs. | ||||||||||||
| DNA ► Send to BLAST |
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| CDS► Send to BLAST |
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