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Entry information : PtDiOx02 (POPTR_0012s04690 / Potri.012G052800)
Entry ID 5159
Creation 2007-04-08 (Christophe Dunand)
Last sequence changes 2010-08-12 (Christophe Dunand)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2012-03-08 (Qiang Li)
Peroxidase information: PtDiOx02 (POPTR_0012s04690 / Potri.012G052800)
Name (synonym) PtDiOx02 (POPTR_0012s04690 / Potri.012G052800)
Class Alpha-dioxygenase    [Orthogroup: DiOx001]
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtDiOx02
start..stop		 S start..stop
CclDiOx01 1127 0 1..632 1..633
CsDiOx01 1125 0 1..632 1..633
EcamDiOx01 1098 0 1..632 1..632
EguDiOx01 1090 0 1..632 1..632
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '5159' 'complement(join(4025355..4025580,4025665..4025908,4026021..4026223,4026540..4026767,4027005..4027150,4027570..4027783,4027917..4028050,4028182..4028331,4028765..4029025,4029146..4029238))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 4029146..4029238 91 N° 2 4028765..4029025 259 N° 3 4028182..4028331 148 N° 4 4027917..4028050 132
N° 5 4027570..4027783 212 N° 6 4027005..4027150 144 N° 7 4026540..4026767 226 N° 8 4026021..4026223 201
N° 9 4025665..4025908 242 N° 10 4025355..4025580 224  
complement(join(4025355..4025580,4025665..4025908,4026021..4026223,4026540..4026 767,4027005..4027150,4027570..4027783,4027917..4028050,4028182..4028331,4028765. .4029025,4029146..4029238))


exon

Literature and cross-references PtDiOx02 (POPTR_0012s04690 / Potri.012G052800)
Literature JGI.
DNA ref. Phytozome 12:   scaffold_12 (4029238..4025355)
Omic ref. ePlant:   Potri.012G052800
Protein sequence: PtDiOx02 (POPTR_0012s04690 / Potri.012G052800)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   632 (304)
PWM (Da):   %s   72735.81 (32725.7)  
PI (pH):   %s   7.39 (8.76) Peptide Signal:   %s   cut: 22 range:22-325
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAFSLSSSSFIHPQLRHIVYKMNLFDTLLFFVIHFVDKLGLWHRLPVLLGLAYMAIRRHLHQRYNLLHVGGINGQKYETEEFSYRTADGKCNHPGDDIIGSQGTFFGRNMRPANSRYGLLDPHPTVVANKLLARNKFIDNGKQFNMIACSW
IQFMIHDWIDHMEDTQQVELKAPDKIADGCPLKSFKFYKTKKVSTGSPYMKTGSLNTRTPWWDGSVIYGNNEDGMRKVREFKDGRLRIAGDGLLEHDEKGIPISGDVRNCWAGFSLLQAL
FVKEHNAVCDMLENYPDFDDEKLYRHARLVTSAVLAKIHTIDWTVELLRTDTLLAGMRINWYGFLGKKIKDLFGHFGGPVLSGLVGLRRPRDHGVPYSLTEEFVSVYRMHSLLPEKLILR
DIHSTASEYECPPVVEEVPMREMAGKDGERRLSELGMEQMLVSMGHQACGAVKLWNYPSWMRNLVAHDINGEDRPDQVDMAAMIYRDRERGVARYNEFRRNLLMIPISNWEDLTDDEEVI
EALRDVYGNDVEKLDLLIGLHAEKKIKGFAISETAFFIFLLIASRRLEADRFFTTNFNSRTYTEKGLEWVNKTETLKDVIDRHFPGMTKKWMKCTSAFSVWDSEPNQTTYIPLYLRPAP

Retrieve as FASTA  
Remarks Complete sequence from genomic (9 introns). No EST. Incorrect prediction of intron 8 from Phytozome.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCATTCTCTCTATCCTCTTCCTCCTTCATTCATCCTCAGCTAAGGCATATTGTTTACAAGATGAATCTTTTTGACACTCTGTTGTTCTTTGTTAGTATCCCATTATCTGTTCATCAC
CTTCATTTTCTCTGCTTAATTAATCATATGCCTTGATTACATGTATGTTCTTCCCACTGTTGATGTGTTTGTTTGCATGTCTGAATTTACCAGGTGTTATTCATTTCGTGGACAAGCTGG
GGTTATGGCACAGATTACCAGTACTTTTGGGACTTGCTTATATGGCAATTAGAAGGCATCTGCACCAACGTTACAATCTCTTGCATGTTGGAGGAATCAATGGTCAGAAATATGAGACTG
AAGAGTTTTCTTATCGAACGGCAGATGGGAAATGCAATCACCCTGGTGATGATATTATTGGAAGCCAAGGAACTTTTTTTGGTCGCAACATGCGCCCAGCAAATTCAAGATATGGGGTTC
GTGTAGTGATCCAACTGATTATATACTTGGAATTCATTGTTAATTAAGAAAAGAAATCCTTAATCACCCTATAAGCATTCCATTAATACAATTTGTTTTTCAAACTCACCCTTGTATTTC
TCTACGTTCATTTCCAACATATAAAAACTCTAGTTGTTTCAGTGAGTTGAAAGCGAGGCTGGTAAAGATCTACTAAAATCATAGAAAAAATTGCTAAACGATGAATCATTTCAGTTTACC
TTATGATATATATTTCCCCATTAAAGAGTCTAAAATTAATGTAAACAAAATGAAACCAATGATTATTATATTAATTGCTTTTGGCAATGAAAGTTTTGTAGATTTTGGATACACATATTT
TACAAGTGATGAAACAGATTTAAGATGATATGGTGCTCTAGCATACATTTAAGATGTTTGTCTTTGCAGTTTTGCTGGATCCTCATCCAACAGTTGTGGCCAATAAGCTTTTGGCAAGGA
ATAAGTTCATAGACAATGGGAAGCAATTCAACATGATAGCCTGCTCATGGATACAATTCATGATTCATGACTGGATTGATCATATGGAGGACACCCAACAGGTCCACACTGTCAAGATTA
TTGCACCAACTTTTTTTGTTCTTACCAGAATTAAGAAAATATACAAGGATCCTAGATTGGACTCCCCTCATAGAACTTCAACTAGGAAGACTGATGTTTAATATGTTAGCAGGTGTTGAA
CTTAAAGCACCTGATAAGATAGCAGATGGGTGTCCATTGAAGTCATTCAAATTCTACAAGACAAAGAAAGTTTCAACAGGTTCACCATACATGAAGACTGGATCTCTAAACACAAGGACT
CCTTGGTGGTAAGTCCTTCTCACATTAAATTTGCGTTTATTGGCATGAAGACGAGGAAGTTCAGGATTCTATGAATTGAACATATAGTACTGTCTTTATTTTTCCCTTTTCAAATTTGCC
TGCTTCTTCTAATTTAAGCAGGGGGATGGAAGTGTAATTTATGGGAATAATGAGGATGGGATGAGAAAAGTTAGGGAATTCAAAGATGGGAGATTAAGGATTGCAGGAGATGGACTTCTT
GAGCACGATGAGAAAGGGATTCCCATCTCAGGAGACGTCAGGAATTGCTGGGCAGGCTTTTCTTTATTACAAGCCTTATTTGTCAAAGAACATAATGCTGTCTGTGACATGCTTAAAGCA
AGTGCTCATTCTTTCTCCATTTTTTCGTTTTTAGTTTTTCCTGTCTACTACCTTTTTGTGACTCAAGTAAAACTGAAATATCTGCACTGTGTTTGAATGCTGAAATGTGGTCTTTAAGCA
CATTTGTAAAACCCTTAAGTGCATATTTTGATCCTAGGCAATTATCCTGTCATTTATGCTACAATTGTCTTCTCATACAAAAAATGGAGATGAAAAACAATGTCATCACATAGTTATGGT
CCCACTGAATTAAGATCACAAAGATTGAAACTTTTTCCATTAACTAGAATGCAACTCTTTTACAAGAAAATCAGGAAATAAAAATTTCACATGAGTATGAACTTTCTGAAAGAGAAATGA
GGATGTCAATACATTTGTTTTGCTGATGCTCCGGTTTATTTTCCTTCTGTTTTCAGGAGAAAATTACCCTGATTTTGATGATGAAAAGCTGTATCGACATGCCAGATTGGTTACTTCAGC
TGTCCTTGCCAAAATTCACACCATTGATTGGACTGTAGAACTCCTTAGGACTGATACTCTCCTTGCAGGGATGAGGATCAACTGGTGAGATGACAATTCTATTGAATAACTATATAAATT
TGCTACACTATAGAGATTCCTACACCTTGCAGAAATCGGAGTATATATATATATATATTAAGGCAAGCAGTAGTGAACTGTATGCAGTTGTCATTATTCCAGTTGCTTTCTGGCTCCTCG
TAATTAATTAAAGCTAAAACATCTTTGCAGTTGTTTGCATGTCGCATTTATAGTCAAGTTAATGAGTTGTGTTTGGCACAGGTGTATGGATTTTTGGGGAAGAAAATTAAGGATTTATTT
GGGCACTTTGGTGGTCCAGTACTGAGTGGATTGGTTGGTCTTAGGCGACCAAGAGATCATGGAGTTCCCTATTCACTGACCGAAGAGTTCGTGAGTGTCTACAGAATGCATTCACTACTG
CCTGAAAAACTCATCCTGAGAGACATCCATTCCACAGCTTCAGAATATGAATGCCCTCCAGTAGTTGAAGAGTACTTGTCTTTCCCTCTTCTTTCTTCATATGCTAAATTACATCATTAG
AAGTTTTAGATATTGTTTGGTAGAGAATTTTTGAAAGATCATAGAAGGATACCAAACCAATCTGCTTCTCTACCTTTTGTTTCTCGGTAATATTAACTTTCAGAAAGCATTTAAAAGCTT
GGTGCTTGTTCTGAATTTTGTTGTCAAACATAATTTACAAAAGCAAGCAGTGATAGAAGTAATTATCTTTCAGACACTGGTTCAGTCATGATGTATTAAATTCTTTACGACTAAGACTAA
CTCTATTTAAACTATATGATGAATTAGGGGGTGCCAATGAGGGAGATGGCTGGAAAAGATGGGGAGAGAAGATTGTCAGAATTAGGAATGGAGCAGATGCTGGTATCGATGGGTCATCAG
GCATGTGGAGCTGTCAAATTGTGGAACTATCCATCATGGATGAGAAACCTTGTTGCTCATGATATTAATGGAGAAGACAGGCCAGATCAAGTTGATATGGCTGCTATGGAAAGCAAGTCA
CTTGCACACTCAAAACATCTTCATTTTGTTATTTCCTTTCTTCTTCAAGTATTGGATTGACTCCCTCATAATCCAAGTGTTAACATAAAGTTTTTGTTGATTAGTTTTTATAGAGATAGG
GAGAGAGGAGTTGCTCGTTACAACGAATTCAGAAGGAACTTACTGATGATTCCGATTAGCAACTGGGAAGATTTGACAGATGATGAAGAAGTTATAGAAGCTCTTCGCGATGTGTATGGA
AATGATGTCGAAAAACTAGATTTGCTGATAGGCTTACATGCAGAAAAGAAAATCAAAGGCTTTGCGATAAGCGAGACTGCTTTCTTCATCTTTTTACTTATTGCCTCGAGGTATGCTCTA
CCCCATCTCACATTTCAAGATAGAATGATCTCCACCTTTCAGTTCTTTCTCTAATTGATATAAGATAATATCAGGAGAGGCTAGAAGCTGATCGTTTCTTCACCACCAATTTCAACTCTC
GAACCTACACAGAGAAAGGCCTGGAATGGGTTAACAAGACAGAGACCCTTAAAGATGTGATCGATCGCCATTTCCCTGGTATGACAAAGAAATGGATGAAGTGTACGAGTGCATTCTCAG
TCTGGGATTCAGAACCTAATCAAACAACCTACATTCCCCTGTATCTAAGACCAGCCCCATGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCATTCTCTCTATCCTCTTCCTCCTTCATTCATCCTCAGCTAAGGCATATTGTTTACAAGATGAATCTTTTTGACACTCTGTTGTTCTTTGTTATTCATTTCGTGGACAAGCTGGGG
TTATGGCACAGATTACCAGTACTTTTGGGACTTGCTTATATGGCAATTAGAAGGCATCTGCACCAACGTTACAATCTCTTGCATGTTGGAGGAATCAATGGTCAGAAATATGAGACTGAA
GAGTTTTCTTATCGAACGGCAGATGGGAAATGCAATCACCCTGGTGATGATATTATTGGAAGCCAAGGAACTTTTTTTGGTCGCAACATGCGCCCAGCAAATTCAAGATATGGGTTGCTG
GATCCTCATCCAACAGTTGTGGCCAATAAGCTTTTGGCAAGGAATAAGTTCATAGACAATGGGAAGCAATTCAACATGATAGCCTGCTCATGGATACAATTCATGATTCATGACTGGATT
GATCATATGGAGGACACCCAACAGGTTGAACTTAAAGCACCTGATAAGATAGCAGATGGGTGTCCATTGAAGTCATTCAAATTCTACAAGACAAAGAAAGTTTCAACAGGTTCACCATAC
ATGAAGACTGGATCTCTAAACACAAGGACTCCTTGGTGGGATGGAAGTGTAATTTATGGGAATAATGAGGATGGGATGAGAAAAGTTAGGGAATTCAAAGATGGGAGATTAAGGATTGCA
GGAGATGGACTTCTTGAGCACGATGAGAAAGGGATTCCCATCTCAGGAGACGTCAGGAATTGCTGGGCAGGCTTTTCTTTATTACAAGCCTTATTTGTCAAAGAACATAATGCTGTCTGT
GACATGCTTAAAGAAAATTACCCTGATTTTGATGATGAAAAGCTGTATCGACATGCCAGATTGGTTACTTCAGCTGTCCTTGCCAAAATTCACACCATTGATTGGACTGTAGAACTCCTT
AGGACTGATACTCTCCTTGCAGGGATGAGGATCAACTGGTATGGATTTTTGGGGAAGAAAATTAAGGATTTATTTGGGCACTTTGGTGGTCCAGTACTGAGTGGATTGGTTGGTCTTAGG
CGACCAAGAGATCATGGAGTTCCCTATTCACTGACCGAAGAGTTCGTGAGTGTCTACAGAATGCATTCACTACTGCCTGAAAAACTCATCCTGAGAGACATCCATTCCACAGCTTCAGAA
TATGAATGCCCTCCAGTAGTTGAAGAGGTGCCAATGAGGGAGATGGCTGGAAAAGATGGGGAGAGAAGATTGTCAGAATTAGGAATGGAGCAGATGCTGGTATCGATGGGTCATCAGGCA
TGTGGAGCTGTCAAATTGTGGAACTATCCATCATGGATGAGAAACCTTGTTGCTCATGATATTAATGGAGAAGACAGGCCAGATCAAGTTGATATGGCTGCTATGGAAATTTATAGAGAT
AGGGAGAGAGGAGTTGCTCGTTACAACGAATTCAGAAGGAACTTACTGATGATTCCGATTAGCAACTGGGAAGATTTGACAGATGATGAAGAAGTTATAGAAGCTCTTCGCGATGTGTAT
GGAAATGATGTCGAAAAACTAGATTTGCTGATAGGCTTACATGCAGAAAAGAAAATCAAAGGCTTTGCGATAAGCGAGACTGCTTTCTTCATCTTTTTACTTATTGCCTCGAGGAGGCTA
GAAGCTGATCGTTTCTTCACCACCAATTTCAACTCTCGAACCTACACAGAGAAAGGCCTGGAATGGGTTAACAAGACAGAGACCCTTAAAGATGTGATCGATCGCCATTTCCCTGGTATG
ACAAAGAAATGGATGAAGTGTACGAGTGCATTCTCAGTCTGGGATTCAGAACCTAATCAAACAACCTACATTCCCCTGTATCTAAGACCAGCCCCATGA

Retrieve as FASTA