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Entry information : GmAPx-R (Glyma06g07180)
Entry ID 5182
Creation 2007-08-22 (Christophe Dunand)
Last sequence changes 2010-08-13 (Christophe Dunand)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2011-12-13 (Qiang Li)
Peroxidase information: GmAPx-R (Glyma06g07180)
Name (synonym) GmAPx-R (Glyma06g07180)
Class Ascorbate peroxidase related    [Orthogroup: APx-R001]
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Glycine
Organism Glycine max (soybean)    [TaxId: 3847 ]
Cellular localisation N/D
Tissue types Leaves
Seedlings
Stems
Whole plant
Inducer Salicylic acid treatment
Repressor N/D
Best BLASTp hits
Perox score E-value GmAPx-R
start..stop		 S start..stop
LjAPx-R 495 1.5e-178 9..319 8..317
MtAPx-R 477 1.74e-171 9..319 11..320
VvAPx-R 417 1.68e-147 4..319 5..330
CsAPx-R 416 3.03e-147 24..319 30..335
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 5211573..5211708 134 N° 2 5211791..5211899 107 N° 3 5211993..5212120 126 N° 4 5212901..5212971 69
N° 5 5213140..5213182 41 N° 6 5213265..5213361 95 N° 7 5213673..5213756 82 N° 8 5214449..5214570 120
N° 9 5214878..5214944 65 N° 10 5215741..5215843 101  
join(5211573..5211708,5211791..5211899,5211993..5212120,5212901..5212971,5213140 ..5213182,5213265..5213361,5213673..5213756,5214449..5214570,5214878..5214944,52 15741..5215843)


exon

Literature and cross-references GmAPx-R (Glyma06g07180)
Literature Shoemaker,R., et al.,. Public Soybean EST Project
DNA ref. Phytozome 12:   Gm06 (5211573..5215843)
Cluster/Prediction ref. UniGene:   Gma.16394
Protein sequence: GmAPx-R (Glyma06g07180)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   319 (765)
PWM (Da):   %s   34092.45 (82995.6)  
PI (pH):   %s   7.78 (7.08) Peptide Signal:   %s   cut: 16 range:16-780
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MRLGVSVSVRCSIGTASGNTQTDYPAKFQRSSFSTANFLPDNASSDLAVSISSSSSRRGLIRIATLPCLLPLIGCLPANAMQPGSKEYLLIKEEVRKVLSKGKAAGVLRLVFHDAGTFDIDDSGGMNGSIVYELERPENAGLKKSVVLQKAKTQIDAIQPVSWAD
MIAVAGAEAVEVCGGPPIQVSLGRLDTLVPDPEGRLPEESLNASGLKKCFQSKGFSTQELVALSGAHTIGSKGFGSPISFDNSYYKVLLEKPWTSGGMPSMIGLPSDHALVEDDECLRWI
KKYADSENLFFEDFKNAYVKLVNSGVRRNSL

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 6, 9 introns) and 8 ESTs (Unigene and two TGI: TC232761, TC220505) + EV275649. Cultivar="Williams", "Kefeng 1" and "Harosoy".
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAGATTAGGTGTGAGTGTGAGTGTGCGGTGCTCAATCGGCACCGCTTCAGGCAACACCCAAACCGATTATCCCGCCAAATTCCAACGGTCATCTTTCTCAACTGCCAACTTCCTCCCC
GACAACGCTTCTTCAGAGGTAAGGGAGGCAACCTTCAACCTCGGATGGAGCTGCTGTTATTGTGCTTATACTTTAACTACACGGTAACCGTTTTTCGTAGATTTAGCAGTTTCAATTTCG
AGTAGTAGCAGCAGGAGAGGGCTAATACGCATAGCCACGTTGCCATGTCTTCTTCCCCTCATAGGTTGCCTCCCAGCCAACGCCATGCACAGTAAGTATGTATATAATTAAAATTTAATT
TTGGACCATACATATTACATATTCATTCATGTCTTGAATAGTGAATACATGGTGGTGATTGAAGGCCAGGTTCAAAGGAATATCTTCTCATTAAAGAAGAGGTGAGGAAGGTCTTGTCCA
AGGGAAAGGCTGCTGGCGTGCTTCGATTGGTATTCCATGATGCCGGAACCTTTGACATCGATGACAGTACAGAGGTAGTATTCTTATCTCATCTGAGGGACTCAAGGTTGCTGTTATTTT
TCATACAGTCCTTCTACTCTCTTTTATGACCAGAGTAAAACATTTGTCTGAAAAATGAATAGCCATGTTTTCTCAGTGTCAAACAAACAGAAATAATCCTCGTTATGACTTTAAAAGTAG
TTATTATACATAGCAGTTTGTAATTGGATTGGATGACAGTATAATAACCTTTACACGATCAGTGCATATATTATGTTTTTCCCGTTAAATATGTAGCTAGTCCACATTTGGGGTGCCAAT
GCCATTTGTTTTGACTTTTTTACCTGATATAATTAAGCTTGCATCCTCTACTTGATATGCTTCCTTAATCATCCAATTTGGCATCAAGAGCCTAACTCTAAAACTAAGTAGAATTCCAAG
CTGAATTCGATTTTGAGTCTTACAGGAAAAAATGCCAATCATTGCTATCATGGAGACAAACCATGCTAGTAACGTAGTGATGGCTTTTTCAGATATGTCTCATTGCTGGTCCTTTTCAAA
CAAAATTATCCTGTGACTTTTCTCCTATGTAATGAATAATCAAATGGAAAATTTCCCATCTTTCTCTTTTCTATAACTCCATTTTAGTAGTAGTTCTAGCCTTTGCTCATCGATTGAATT
TGTTTAGGTAATTTTTCACAAGGCGTGAGCCAATTATAGAGGAAGCTGTGCGGTATCTTATTATGTTTTCTTGGTAATAGTGTCATCATCAAATTCAAAATGTACATATATTTTTTGCAC
TTTTCATGTTGCAGGTGGTATGAATGGTTCTATAGTCTATGAACTTGAAAGACCTGAAAATGCTGGCCTGAAAAAATCAGTAAAGAGGCATGCTCTGTCTCACTTTTTTCTCATTCCCCT
TCTACCACTTCTATTTCTATTACTATTTGGAGAATTCCACATGATAGTGAGGTAGTGATGGCTTTAAGACAAATATCTTTTCTTACATTTTAACTGCCACCTAATATCTCAGTGGACGTA
TCACATATTTTTTAGGTTCTGCAAAAAGCAAAGACTCAGATAGATGCTATCCAACCAGAGGTCCTTCTTCTATCTGGTAACTGCTGCTAATAGTAAGTGATAATTTGGTCTGGATCAACA
AATTTTCGTTTATCTTTATTAGTATCTTGGGCGGACATGATTGCTGTGGCTGGAGCTGAAGCAGTTGAAGTATGTGGAGGTCCACCTATTCAAGTTTCACTGGGCAGATTAGATACACTC
TGTAAGATGCTTGGTTTCTAGTTGACTTGTTTTCAAGTTAGTACTTATGAAGTATGATGTGACAAGCAACTGGTCTTTTCTTAACAGGATGACAAACAAACAGTTATATGTTAGTTTTGG
TGCATTAGGTGCTCTGAAAATGTTTTTTAACCAATTATTGAATTATGTTCAATCTGTTTGTTTAATGAATGATCAACCATTTTGCTGGGAATAAAAATTTCCTCCATGGGAATTTAACTC
ATTGGTTTTCATATAACAATGAAGTCTGGTTAGTCTTCAGTCAAATAATATTTTCATTCATTTTAATGATAGGGTGCCTGATCCAGAAGGGAGACTTCCTGAGGAATCTCTCAATGCTTC
TGGTTTGAAGAAATGTTTCCAGAGCAAAGGCTTTTCTCGTGAGTATGAGGAAAAACTCCTAATTTACCTTGTATTTGTGTTCTATAAAGTATCATTTATTTGTATCTATTTTAGACTAGT
GCAGCTATACATCATCTAAAAACTGTCTGATTGTCCATAACATGAGAATCTTAAGATTACAAAGGCAGACTGAATCTTATACTACCTCCGATCCTATATATAAGAAACAATTACCTAATT
CATAAACACCAATAAAAGTAGTTAGATTAGTTAATTTGTCATAAAATTTTATTTTATTTCAAGACTACCCATAATATTAGATGATTTAAGAGGTGAATATTTTTTAAAAAATAATTTTTC
AACTAATGAGTGTCTCTTATTTTGATGATACCTCAATAAATGCACCCACTTTGATGGAAAAATGATTATAATCATTAATAGACCTCACAATAATTAGGGGTCAAAAGCAAATTTAGCAAT
AAAGTAATCTTATGTTTCTTATAATTAAGACCAAGAAAATGTTACATTTTGTTTCATATATAGAGGATTAGAGGTAGTATCTTATAAAGTCCTAATTCTAAACCAGACTAACAAGGCAAG
AAAATAGTGATTTTCTGTCCCAAAAATTACTTATCATATGTTTATTAGTCATTGTATAAATTTTATAAAATATTTTACTTGAATTAGTTTTGCTTATGCATCCTTATCATTTGGAGCTTT
TCTTTCATAGAACACAAGAACTTGTGGCTTTGTCTGGAGCCCACACTATTGGAAGTAAAGGTTTTGGAAGCCCAATTTCTTTTGACAATTCATATTATAAGGTTCTTTTGGAGAAGCCGT
GGACGTCTTCAGAGGTAATTTAACAGCTTATCTCATTTAAACATTGTTTTTATATTTTTTTTGTATACTTGCTACAAGTCGTTGTTTTCTGAAGACAATAAGGAAATGCAAGAGTTGAAT
GGATGTTACTATGTTAGGCTTAGCCATTGGATTATCACATAATTTTTGTCCAGTCTTCTCTGGATATGTTCCAATCAACAGCTCTACTTTGCGGTTGCATGCTCATTTTTCTGGATAGAC
CCAACATATTTATTGGTTTGTTTTTGTAAAAAAAAAAAAATTATTTGTATAATTCTCATCTGCTGGTTGTCTTTTATGCAGGTGGTATGCCGAGTATGATTGGGCTTCCTTCAGATCACG
CTCTTGTTGAGGATGATGAATGCTTAAGAGGTTCTTTATCTTTGACAACCTCTTATGCTACTCTTAATATGAATTTGTCCCCCACTTTTTTTCTTTTCTGGCTAAGCACTAAAATTTTAG
TGCTGAAGTGGTAAATCCTTTAAAGAATGTTAGGTTATCTAAACAGGTAAAACAATTAAAATGAGAAGCATATCCTTTTCTTGTTTTTCAGGATTCTATAAAATAACAGGTAACGCAAAT
AATCCATCAATTGGAAGCAAATAATCTCTATCAATTGGTAGTGAATAAGTTATGTTAGTTATATTTGTCTGACAGTCTGACACCATAATTCGTGATTCATCGTGTCTTGCCCTAGTACAC
CATATCCTTGTCTCTGGAGTACTAGTTTACACACAAAACTAAACATTGAATTTTCCTTTTCTAGACCTCTAGTTGAAATCTGAAACATCAATTTTCAAACAGTTAGGTGATGATCCCGAG
CCTAACGCATGTTCTTGTTCAAATTCTTGTATTATAGTTGTTTGTTGGCCTCAGGACTCATTTCTGATTCTTTTTTGTCCATGTAAGCAAACAATGACGTGCTGAAAAGAAAATTGTCTT
TTTAAGTAAGCTAGAGTCGGTATTGTCTATCAAAAACTCCCATCAATCATGTATTTAGGAGGGGGAAATTTTAACTAAAATTTTTAGCTGGACCATTTTATTATATCTTAATGATGACTA
GACATTCACTTGCATGTTACATATCCCGGTGCACCGCATGTGTATGTTTCTGCTGATTATATGTTCCTTAGTGTGCATAACTAAGAGAGCTCCATTGATTGAACAGATGGATTAAAAAAT
ACGCAGACAGTGAGAATCTATTCTTTGAAGATTTCAAAAATGCGTATGTCAAGCTGGTGAATTCTGGTGTGAGGCGGAATAGCTTATAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAGATTAGGTGTGAGTGTGAGTGTGCGGTGCTCAATCGGCACCGCTTCAGGCAACACCCAAACCGATTATCCCGCCAAATTCCAACGGTCATCTTTCTCAACTGCCAACTTCCTCCCC
GACAACGCTTCTTCAGATTTAGCAGTTTCAATTTCGAGTAGTAGCAGCAGGAGAGGGCTAATACGCATAGCCACGTTGCCATGTCTTCTTCCCCTCATAGGTTGCCTCCCAGCCAACGCC
ATGCAGCCAGGTTCAAAGGAATATCTTCTCATTAAAGAAGAGGTGAGGAAGGTCTTGTCCAAGGGAAAGGCTGCTGGCGTGCTTCGATTGGTATTCCATGATGCCGGAACCTTTGACATC
GATGACAGTACAGGTGGTATGAATGGTTCTATAGTCTATGAACTTGAAAGACCTGAAAATGCTGGCCTGAAAAAATCAGTAAAGGTTCTGCAAAAAGCAAAGACTCAGATAGATGCTATC
CAACCAGTATCTTGGGCGGACATGATTGCTGTGGCTGGAGCTGAAGCAGTTGAAGTATGTGGAGGTCCACCTATTCAAGTTTCACTGGGCAGATTAGATACACTGGTGCCTGATCCAGAA
GGGAGACTTCCTGAGGAATCTCTCAATGCTTCTGGTTTGAAGAAATGTTTCCAGAGCAAAGGCTTTTCAACACAAGAACTTGTGGCTTTGTCTGGAGCCCACACTATTGGAAGTAAAGGT
TTTGGAAGCCCAATTTCTTTTGACAATTCATATTATAAGGTTCTTTTGGAGAAGCCGTGGACGTCTTCAGGTGGTATGCCGAGTATGATTGGGCTTCCTTCAGATCACGCTCTTGTTGAG
GATGATGAATGCTTAAGATGGATTAAAAAATACGCAGACAGTGAGAATCTATTCTTTGAAGATTTCAAAAATGCGTATGTCAAGCTGGTGAATTCTGGTGTGAGGCGGAATAGCTTATAA

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GTGTGTGGCG TCAGGTAGAG ATAATGAGAT TAGGTGTGAG TGTGAGTGTG CGGTGCTCAA TCGGCACCGC TTCAGGCAAC ACCCAAACCG ATTATCCCGC CAAATTCCAA CGGTCATCTT  TCTCAACTGC CAACTTCCTC CCCGACAACG CTTCTTCAGA TTTAGCAGTT TCAATTTCGA GTAGTAGCAG CAGGAGAGGG CTAATACGCA TAGCCACGTT GCCATGTCTT CTTCCCCTCA  TAGGTTGCCT CCCAGCCAAC GCCATGCAGC CAGGTTCAAA GGAATATCTT CTCATTAAAG AAGAGGTGAG GAAGGTCTTG TCCAAGGGAA AGGCTGCTGG CGTGCTTCGA TTGGTATTCC  ATGATGCCGG AACCTTTGAC ATCGATGACA GTACAGGTGG TATGAATGGT TCTATAGTCT ATGAACTTGA AAGACCTGAA AATGCTGGCC TGAAAAAATC AGTAAAGGTT CTGCAAAAAG  CAAAGACTCA GATAGATGCT ATCCAACCAG TATCTTGGGC GGACATGATT GCTGTGGCTG GAGCTGAAGC AGTTGAAGTA TGTGGAGGTC CACCTATTCA AGTTTCACTG GGCAGATTAG  ATACACTGGT GCCTGATCCA GAAGGGAGAC TTCCTGAGGA ATCTCTCAAT GCTTCTGGTT TGAAGAAATG TTTCCAGAGC AAAGGCTTTT CAACACAAGA ACTTGTGGCT TTGTCTGGAG  CCCACACTAT TGGAAGTAAA GGTTTTGGAA GCCCAATTTC TTTTGACAAT TCATATTATA AGGTTCTTTT GGAGAAGCCG TGGACGTCTT CAGGTGGTAT GCCGAGTATG ATTGGGCTTC  CTTCAGATCA CGCTCTTGTT GAGGATGATG AATGCTTAAG ATGGATTAAA AAATACGCAG ACAGTGAGAA TCTATTCTTT GAAGATTTCA AAAATGCGTA TGTCAAGCTG GTGAATTCTG  GTGTGAGGCG GAATAGCTTA TAAATTCAGG AGTTGAATGT TCCAACTTCC ACTGAAGGGG CAACTTGCAT TTTTATTGAC TTTCTAACAG TGTTTATGCA CAGTTGCCAT GAAGTTTTGG 
GTGCTTTATT ATTGATTTGA ACATCAAGAT CTACTACCCC CTAAAAATCA ACCAACGAAG TATGTGCATG CAGGGCCAAT AAATnTCATG GAAAAGTCGT TTAAGGGGT 

Retrieve as FASTA