Entry information : GmPrx[P]43
Entry ID 534
Creation 2011-11-10 (Qiang Li (Scipio))
Last sequence changes 2011-12-14 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2011-11-28 (Qiang Li)
Peroxidase information: GmPrx[P]43
Name GmPrx[P]43
Class Class III peroxidase     [Orthogroup: Prx041]*
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Glycine
Organism Glycine max (soybean)    [TaxId: 3847 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GmPrx[P]43
start..stop
S start..stop
GmPrx[P]219 389 3.37e-139 1..228 1..245
GmPrx105 380 1.07e-134 1..228 77..331
MtPrx90 336 3.44e-117 1..228 77..331
GmPrx[P]313 330 2.39e-116 9..228 1..239
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '534' 'join(8072695..8072907,8073082..8073130,8073458..8073879)' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 8072695..8072907 211 N° 2 8073082..8073130 47 N° 3 8073458..8073879 420  
join(8072695..8072907,8073082..8073130,8073458..8073879)


exon

Literature and cross-references GmPrx[P]43
DNA ref. Phytozome 12:   Gm09 (8072695..8073879)
Protein sequence: GmPrx[P]43
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   227
PWM (Da):   %s   25528.03  
PI (pH):   %s   6.03
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
LILDNVEGLTSEKLTGPNLNSLRGFEVIDKIKYLLEEECPITVSCADILAMAARHVVELVNTALSQGLSECNFKQQGLDIEDLVTLSGSHTIGRPRCLSFRHMVFDAKEEYDYGYDDYK*
YTSLKRILRSICPVEGRDNKSAPLDFQTPKRFGNHYFINILEGKDLLGSDNVLISHDLLGKITEQVWDYASNEKILFASFAKSMIRMGNINVLTGNKGEIRRNCRFV

Retrieve as FASTA  
Remarks Pseudogene from genomic. Incorrect prediction from phytozome (first exon and a sequence in the frame are missing, stop in frame).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CTGATTTTGGACAACGTGGAGGGCTTGACAAGTGAAAAGCTGACTGGACCAAATCTGAACTCTTTACGTGGATTTGAGGTCATAGACAAGATTAAGTATTTGCTTGAAGAAGAATGTCCT
ATTACTGTTTCATGTGCTGACATCCTTGCGATGGCTGCACGTCATGTTGTTGAATTGGTAAACACTGCTTTGTCACAGGGGTTAAGTGAATGT
GTANNNNNNNNNNNNNNNNNNNNNNGC
TTTACATCAATTTCTATCATTTGTTTTTGAAGAGAGGAGGACAAAGATGGGAAGTCTTGGTTGAAAGGATGGATGCTCTGGAGTGAAGTTTCAGTGGAGCTAACATATTAATTCCTGCTC
CAAATTCATCTTTCGAGGTTCTCATACATAATTTTAAGCAACAAGGCCTCGACATAGAAGACTTGGTAACTCTATCAGAGGTATATTTATTATTTTGACAACATATATATACAACTTTCT
AAATTGTTGTTAGTACAACTTTCTAATCAAAATTAGTGTCCCACATCTTCATAAAAAAATAATTAGTGACCCACCTTAATGAATTATTGAAATGAAACTAATTTTTAATTGAAAAATAAC
ACAAACAAAATCTCGATTATAATTGATGAATAACATAAACAATACCTATAAAAACTCTAATTTTGTCCTTATAATTTGTTCAAAGTTCAATCAAATGTTAATATTTTGGGGCTCTGACAA
AGGAAGAAGAGATTAAGCACGTACAGTTGTTGCTTGACAAAATACAGGTAGCCATACTATAGGAAGACCAAGATGTCTAAGCTTTAGGCACATGGTATTTGATGCAAAAGAGGAATATGA
CTATGGTTATGATGACTACAAATGATACACAAGTCTCAAGAGAATCCTGCGGTCCATATGCCCTGTTGAGGGAAGGGACAATAAATCTGCACCCTTGGATTTTCAAACCCCAAAAAGATT
TGGCAATCACTACTTCATAAACATTCTTGAAGGGAAAGACTTGTTAGGTTCTGACAATGTTCTTATTAGCCATGACTTACTTGGAAAGATTACAGAGCAGGTGTGGGATTATGCCTCTAA
TGAAAAAATTTTGTTTGCTTCATTTGCTAAATCTATGATTAGGATGGGAAACATCAATGTTCTTACTGGAAATAAGGGGGAAATTAGGAGGAATTGTAGGTTTGTCAAT

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CTGATTTTGGACAACGTGGAGGGCTTGACAAGTGAAAAGCTGACTGGACCAAATCTGAACTCTTTACGTGGATTTGAGGTCATAGACAAGATTAAGTATTTGCTTGAAGAAGAATGTCCT
ATTACTGTTTCATGTGCTGACATCCTTGCGATGGCTGCACGTCATGTTGTTGAATTGGTAAACACTGCTTTGTCACAGGGGTTAAGTGAATGT
AATTTTAAGCAACAAGGCCTCGACATA
GAAGACTTGGTAACTCTATCAG
GTAGCCATACTATAGGAAGACCAAGATGTCTAAGCTTTAGGCACATGGTATTTGATGCAAAAGAGGAATATGACTATGGTTATGATGACTACAAATGA
TACACAAGTCTCAAGAGAATCCTGCGGTCCATATGCCCTGTTGAGGGAAGGGACAATAAATCTGCACCCTTGGATTTTCAAACCCCAAAAAGATTTGGCAATCACTACTTCATAAACATT
CTTGAAGGGAAAGACTTGTTAGGTTCTGACAATGTTCTTATTAGCCATGACTTACTTGGAAAGATTACAGAGCAGGTGTGGGATTATGCCTCTAATGAAAAAATTTTGTTTGCTTCATTT
GCTAAATCTATGATTAGGATGGGAAACATCAATGTTCTTACTGGAAATAAGGGGGAAATTAGGAGGAATTGTAGGTTTGTCAAT

Retrieve as FASTA