View Redoxidase 5343

Entry information : PnoLDS01

Entry ID	5343
Creation	2007-05-14 (Marcel Zamocky)
Last sequence changes	2007-05-14 (Marcel Zamocky)
Sequence status	complete
Reviewer	Christophe Dunand
Last annotation changes	2013-09-04 (Catherine Mathe (Scipio))

Peroxidase information: PnoLDS01

Name

PnoLDS01

Class

Linoleate diol synthase (PGHS like) [Orthogroup: LDS001]

Taxonomy

Eukaryota Fungi Ascomycota Dothideomycetes Phaeosphaeriaceae Phaeosphaeria

Organism

Phaeosphaeria nodorum (Stagonospora nodorum) [TaxId: 13684 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	PnoLDS01 start..stop	S start..stop
AfumLDS01	1124	0	35..1107	11..1071
AorLDS01	1114	0	28..1107	4..1071
NfLDS01	1113	0	35..1107	11..1071
AclLDS01	1108	0	35..1107	11..1071

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '5343' 'join(250745..254045,254101..254126)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	250745..254045	3299	N° 2	254101..254126	24
join(250745..254045,254101..254126)

Literature and cross-references PnoLDS01

Literature	The Broad Institute Genome Sequencing Platform; Birren B., et al., "Annotation of the Phaeosphaeria nodorum SN15 genome."; Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
Protein ref.	GenPept: EAT84859 UniProtKB: Q0ULH1
DNA ref.	JGI genome: scaffold_11 (250745..254126)

Protein sequence: PnoLDS01

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	1108
PWM (Da):	124078.25
PI (pH):	6.38

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MASDAKAAWDSHVDTRTGITPPKPDEPSELAKLRASVGSKFGAFAALMGAAAAPVPQTGDGSKLAEEDPTVLKKIEGIMRDMSHLRIENMQTLLEAQKHKMTGELMDDKTYFMEGLIRTA
AALPDGSKTRDTVTHSFLEQLWNDLEHPPQSYLGAKYQYRSADGSNNSLKHPQLGAAGTPYARTVKPSMMQTPARPDPGVVFDSIMTRKHAELHPNRISSMLFYLASIIIHDCFRTSHED
YSVSMTSSYLDLSPLYGSNQAEQDQMRTMIDGKIKPDCFSESRLLFFPPGVGALLIMFNRFHNYVVENLALVNEQNRFPKPAAEAPKSTGDEEKDEAAKAKYEKSKVKYDNDLFQTGRLI
TCGLYVNIILIDYVRTILDLNRTDSNWQLNPRAEMENVELGVGNQVSAEFNLVYRWHSTVSDRDEKWTQEMWDGLFGEGRDPKTVGKWEFLQRLNDVYKTTDPDPSKRKFAGLARNQDGT
LPDQELVDMLVSSIEDCANSFGPNRVPSVFRAIEVLGIEQARSWNLGSLNEFRKHFDLEPHKTFEDITSDKYVQEQLKHLYDHPDKVEIYPGIVVEDAKKPMAPGSGLCPGYTTSRAVLS
DAVALVRGDRFYTKDYNPSTLTNWGYRCVDSDTDIDNGCVFYKLFLRAFPNHFKQNSVYAHYPLTIPSAMQEALKDLKKDKLYDFSKPTPASTLHVVKEYKLATQILLDQSTFKVAWGKA
MEFIMGPFGKEFSLAGDTPTNTASREMMSKALYVKDWEKDVRAFYTSKTKELLQEKSAHIADFNQVDIIRDVGNLAHVHFCAELFMLPLKTDERPHGIFTESELYLILSSVFALIFFDVD
PAGSFPLHVKARKATQVLGSVIEKNVEAIAHGGLLHAVTKAIWPEQGGLQNYGIHMIQRLLQTGMPAPQLVWGHIFGTAGAMVANQGQLFAQTLEYYILGEGKAHWASIQALAHDESESA
FAKLMHYAMEGGRLNGETAVMRDVAQDSTTTTIRAGDRVFVDLRAASHDPNVFPNPDSVDITRPLDAYIHLGFGPHQCLGLPMVRVIMTAMLKEVAKLKNLRPAPGPQGKIHKVEKGVGE
EYPYHAYLTEMQDMYFPFPCSLKLVWDD

Retrieve as FASTA

Remarks

Complete sequence from genomic (no intron). No EST. Strain="SN15". Contig position: 88242-91541. Regions: 159-622 heme peroxidase domain; 685-1068 "CypX" cytochrome P450 domain.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCGTCCGACGCAAAAGCTGCATGGGATAGCCATGTCGACACAAGGACTGGAATTACACCACCAAAGCCAGATGAGCCGTCTGAGCTTGCGAAATTGAGAGCCTCTGTGGGAAGCAAG
TTCGGAGCATTTGCGGCTCTCATGGGAGCTGCAGCAGCGCCGGTACCACAGACTGGAGATGGCTCCAAGCTTGCAGAAGAGGACCCAACTGTGCTCAAAAAGATAGAAGGTATCATGCGC
GACATGTCCCACCTCCGAATTGAGAACATGCAGACTCTCCTGGAAGCCCAGAAGCACAAAATGACCGGAGAGCTGATGGACGACAAGACTTACTTCATGGAAGGACTAATCCGAACTGCT
GCTGCGTTACCGGATGGCTCAAAAACTAGAGACACTGTTACCCATAGTTTCCTGGAGCAATTGTGGAATGATCTAGAGCATCCACCTCAATCTTACCTTGGAGCGAAGTACCAGTATAGG
TCGGCTGATGGCTCGAACAACAGCTTGAAACATCCCCAGCTCGGTGCGGCAGGAACACCATATGCGCGCACCGTCAAGCCCTCGATGATGCAGACTCCTGCGCGACCAGATCCTGGCGTT
GTGTTCGATAGCATCATGACGAGAAAGCATGCCGAGCTGCACCCAAACAGAATCTCAAGTATGCTTTTCTATCTGGCCTCCATCATCATACACGACTGCTTCAGGACCAGCCATGAAGAC
TACTCCGTCTCGATGACATCGTCATATCTGGATCTTTCGCCTCTGTATGGCAGCAATCAAGCAGAGCAGGACCAGATGAGAACGATGATAGACGGAAAGATCAAGCCAGATTGTTTCTCC
GAATCTCGTCTGCTGTTCTTCCCACCTGGAGTCGGCGCGCTGCTGATCATGTTCAACCGTTTCCACAACTATGTAGTGGAGAACCTCGCACTTGTCAATGAGCAGAACCGCTTCCCGAAG
CCTGCTGCAGAGGCGCCAAAGTCTACTGGTGATGAGGAAAAGGATGAGGCAGCCAAGGCCAAGTACGAAAAGTCCAAGGTAAAGTACGACAACGATTTGTTCCAGACTGGACGTCTCATC
ACGTGCGGTCTCTACGTCAACATCATCCTCATCGACTACGTCCGCACTATTCTGGACCTCAACCGCACAGACAGCAACTGGCAGCTCAATCCTCGTGCTGAGATGGAGAACGTCGAGCTC
GGTGTCGGTAACCAGGTTTCTGCAGAGTTCAACCTCGTCTACAGGTGGCACTCGACAGTATCTGACCGTGACGAAAAGTGGACTCAGGAGATGTGGGACGGCCTCTTTGGTGAAGGCCGA
GATCCAAAGACTGTCGGAAAGTGGGAGTTTCTCCAGCGTTTGAACGATGTGTACAAGACAACCGATCCAGACCCGTCGAAACGAAAGTTTGCCGGGCTGGCACGCAATCAGGATGGCACT
TTGCCAGATCAAGAACTCGTCGACATGCTCGTATCTAGTATTGAAGACTGTGCCAACTCTTTTGGACCGAACAGGGTGCCGTCAGTGTTCCGCGCCATCGAGGTCCTTGGTATCGAACAA
GCGCGAAGCTGGAATCTGGGCTCTTTGAATGAGTTCCGAAAACACTTCGATCTTGAGCCTCACAAGACTTTCGAAGACATTACCAGTGATAAGTATGTTCAAGAACAGCTCAAGCACCTC
TACGACCATCCGGACAAGGTCGAAATCTACCCCGGTATCGTAGTGGAAGATGCGAAGAAGCCCATGGCACCTGGCTCTGGTCTTTGCCCTGGATACACGACATCGCGCGCTGTACTGTCA
GATGCCGTTGCTCTTGTCCGTGGCGATCGCTTTTACACCAAGGACTACAACCCCAGCACACTCACGAACTGGGGCTATCGTTGTGTGGATAGCGATACTGACATCGACAATGGCTGCGTC
TTCTACAAGCTCTTCCTCCGAGCTTTCCCCAACCATTTCAAACAGAACAGCGTATATGCCCACTATCCGCTCACCATTCCATCCGCCATGCAAGAAGCTCTCAAGGATTTGAAGAAGGAC
AAGCTATACGACTTCTCGAAGCCGACGCCAGCAAGTACTCTGCATGTCGTCAAAGAATACAAACTCGCCACACAGATCTTGCTAGACCAATCCACCTTCAAGGTAGCCTGGGGCAAAGCA
ATGGAATTCATAATGGGCCCATTCGGCAAAGAGTTCTCGCTCGCCGGCGACACCCCAACCAACACTGCGTCGCGCGAGATGATGTCCAAAGCTCTATACGTAAAAGACTGGGAGAAAGAC
GTGCGAGCATTCTACACCTCCAAGACCAAAGAACTCCTGCAAGAAAAATCCGCACACATTGCAGACTTCAACCAAGTCGACATCATCCGCGATGTCGGCAATCTCGCCCACGTCCACTTC
TGCGCGGAGCTCTTCATGCTCCCGCTCAAAACCGACGAGCGCCCGCACGGCATCTTCACCGAGTCGGAGCTCTACCTGATCCTGTCCAGCGTGTTTGCGCTCATCTTCTTCGACGTCGAC
CCCGCGGGCTCGTTTCCGCTGCACGTCAAGGCGCGCAAGGCCACGCAAGTCCTCGGGTCGGTCATCGAGAAGAACGTCGAGGCCATCGCGCACGGCGGCCTGCTGCACGCCGTCACAAAG
GCCATCTGGCCCGAGCAAGGCGGGCTGCAGAACTACGGCATCCACATGATCCAGCGGCTCCTGCAGACGGGCATGCCCGCGCCGCAGCTCGTCTGGGGCCATATCTTCGGCACCGCGGGC
GCCATGGTCGCGAACCAGGGGCAGTTGTTTGCGCAGACGCTCGAGTACTACATCCTAGGCGAAGGCAAGGCGCACTGGGCTAGTATCCAGGCGCTCGCGCACGACGAGAGCGAGAGCGCG
TTTGCAAAACTGATGCATTACGCCATGGAGGGCGGGCGCTTGAATGGCGAAACGGCCGTCATGCGAGACGTCGCGCAAGACTCGACGACGACGACGATTAGGGCTGGCGACAGGGTTTTT
GTAGACCTCCGTGCTGCGTCGCATGATCCGAATGTCTTCCCCAACCCGGACTCCGTCGACATCACACGCCCGCTCGACGCGTACATTCATCTGGGCTTCGGCCCGCACCAGTGCCTTGGG
CTGCCGATGGTGCGCGTCATAATGACTGCGATGCTCAAGGAGGTCGCGAAGTTGAAGAATCTCCGGCCCGCGCCGGGGCCGCAGGGGAAGATACATAAAGTAGAGAAGGGCGTGGGCGAA
GAATATCCGTATCATGCATACTTGACGGAGATGCAGGATATGTACTTTCCGTTCCCTTGTTTTGTAAGTTCTGAAATCCGCAGTGAGTTAGGGAGATATGCTAACTTGATTGTTGTAGCG
CTGAAGCTTGTTTGGGACGACTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA