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Entry information : SbGPx02 (Sobic.001G365800.2 [2.1] / Sb01g034870 [1.4])
Entry ID 5745
Creation 2007-08-17 (Christophe Dunand)
Last sequence changes 2011-03-03 (Nizar Fawal)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-06 (Messaoudi)
Peroxidase information: SbGPx02 (Sobic.001G365800.2 [2.1] / Sb01g034870 [1.4])
Name (synonym) SbGPx02 (Sobic.001G365800.2 [2.1] / Sb01g034870 [1.4])
Class Plant glutathione peroxidase    [Orthogroup: Gpx2002]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue types Leaves
Ovaries
Roots
Inducers Acid treatment
Alkaline treatment
Pathogen interaction
Repressor N/D
Best BLASTp hits
Perox score E-value SbGPx02
start..stop		 S start..stop
ZmGPx02 339 9.51e-122 1..170 1..170
OsGPx02 318 1.15e-113 1..170 1..169
HvGPx02 312 4.62e-111 1..167 1..166
ThasGPx04 274 3.56e-96 1..170 1..169
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 58302312..58302365 52 N° 2 58302118..58302194 75 N° 3 58301958..58302019 60 N° 4 58300946..58301064 117
N° 5 58300312..58300482 169 N° 6 58300188..58300220 31  
complement(join(58300188..58300220,58300312..58300482,58300946..58301064,5830195 8..58302019,58302118..58302194,58302312..58302365))


exon

Literature and cross-references SbGPx02 (Sobic.001G365800.2 [2.1] / Sb01g034870 [1.4])
DNA ref. Phytozome 12:   chromosome_1 (58302365..58300188)
Cluster/Prediction ref. UniGene:   Sbi.15748
Protein sequence: SbGPx02 (Sobic.001G365800.2 [2.1] / Sb01g034870 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   171
PWM (Da):   %s   19241.86  
PI (pH):   %s   9.34
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MGAAESVPETSIHEFTVKDCNGKEVSLETYKGKVLLVVNVASKCGFTEVNYTQLTELYRKYRDDFEILAFPCNQFLRQEPGSNQQIKDFACTRFKAEYPVFQVRVNGPDAAPVYKFLKAS
KPGLFGSARVKWNFTKFLVDKNGKVVERYGTSTAPMSIEKDIQKALDEE*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 1, 6 introns) and 13 ESTs
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGGGCGGCCGAGTCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGGTGCGGCGATCCCCATCCCGAGATCACGCTCCTTATGCGTGGTGGTCCTGTTTGTTTTACTGTTTT
TCTCTCTCTCTCGCAAAACATAATTTTTTTGGGGATTTCTTCGCGGAGCAGGAGATTGCAACGGCAAGGAAGTGAGCCTGGAGACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCG
CCTCCAAATGGTACGCTATCTTTCCCTGACTGTCGATAGGATTTGTTCTTTGTACTCTCCTGGTTCGTGAGATGATGAGACGGTGTTTGATGTTCTCGGTGCCGTCAGTGTGGGTTCACC
GAGGTTAATTACACGCAGCTGACGGAGCTTTATCGGAAGTACAGGGACAAAGGTCAGTTCTTTTGCTTGCTCCTGTTCTTGATCTGTTGTTTGTGCTTGTTAATGGTATGAAATGTGAAT
CTCTCTGGGGTTGGCGTGCACAAGTGGGTTCAACAAGTGTTCTAGTTAGAATTGGGGTAGTGCACGTTGATGCTCGTCGGAATAGTGGTTATTGTCTTCTGTTTGAATTGAAATTTCTGT
TTGAAGTGGAATGGCAAAAACACACACATAAATTTTCACCTGAAAAAAGTGTGGGATTAGTCTTGCCCAACGGAGATTTTACATTGTTTGCCACACAGCACTCATACCAAAAGCTTTGTT
TACCTGTAGATCATTTCTGCCACTGTTTTTCGACATGTATGGGTTTTATGCAGCTTACATTAGATAGGCAGCTGGTACAACATGCATACAATTTCATTGCATTCCCTTATCAAATCGGAG
CGATCTTCCGTTTTCTGGAGTGCTTCTAACTTGCAGATACGTTTTGAGGATCAGCGAAGGGTTCTGAAAGGAGGCTGTGAGAACCCTGTTTTCCAAAGAAGATGTTTGTTTCCATGAGGA
TTGTTTCCCCAAATTTCTTGGACAACTAAAATTAGCTTCAACTTAACATTTTCCTGACTGAGCCAATATGGGCACTGTTGAGTGAAATTAAATCAAAACTGCATGGAGTTTAAATGACGC
TAGAATGATCACCATTTGTTGTTGCTTAAACATCAAGTATTGTACCCACTTACACTTGCAGCAAATTTGCTTTGTTTTAAGTTCAGTATATATGGCTATCAAGCAAGCCCATGTCTCTTG
TGACTATGCCTCTGTACTTTGATTCAGTCTGTTCATGCTATTCCATTGAACTGATTTTTATTCTTTAGATCTAACAGAAACTGATTTTACTTCCAAACTTGTCAGACACTTTGAGATATT
GGCATTCCCCTGCAATCAGTTCTTGCGACAAGAGCCAGGTTCTAATCAGCAGATAAAAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGGTGAGAACTGTTTG
TCAGACATGCTAGCTTGCTAAGAAACTTTTGATCCTTTTTCTGAGATAATGTCTTCTGAATACTCGTTTCATGTACCTAGTAGTTAGAATAATACTGGATATTCTTTATGCAAATTTCTA
GATGATACCGAAGACCACATGGCAGAATACATCAATTTGGAAACTAACGTCATGTGGTAGAAATAAACTCAGAACTTGACGATACATTGTTATATTGTTTTTTGTTATGCATAATCAGAC
AAGTTTTAGTTGATTTGCACAAGCGTATTTACAGACGCAATCTACATCTGCATCTCACCATCTAAAAATACAAGTAATCAGCCATGGTGTGAAATTTGTTGGCATGCATATTGGTATTTG
GATAGACCTGACAGGCTGACATCAACGTGCAAACCGTGTTCTTATGTTGCTATAAGAAAGCTGATTGCATTTTGAACTTGGGTTTGCAGGTGTGCGTGTAAATGGCCCGGACGCCGCGCC
GGTTTACAAGTTTCTGAAAGCTAGCAAGCCTGGTTTGTTTGGATCAGCAAGAGTCAAATGGAATTTTACCAAGTTTCTCGTGGATAAAAATGGGAAGGTCGTTGAGAGATACGGAACATC
GACGGCTCCAATGTCAATTGAGGTCCCTCCCTCCTTCCCTCTCTCTGTCTCTGTCTCTCCCTTTTCAGACGTCTGCTTATTTTTGATGGATTGGTGTTTCTTCGACTTTGCAGAAAAGGA
CATCCAGAAGGCCCTTGATGAGGAATAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGGGCGGCCGAGTCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGGATTGCAACGGCAAGGAAGTGAGCCTGGAGACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTC
GCCTCCAAATGTGGGTTCACCGAGGTTAATTACACGCAGCTGACGGAGCTTTATCGGAAGTACAGGGACAAAGACTTTGAGATATTGGCATTCCCCTGCAATCAGTTCTTGCGACAAGAG
CCAGGTTCTAATCAGCAGATAAAAGACTTTGCTTGCACCAGATTTAAAGCTGAATACCCAGTTTTTCAGAAGGTGCGTGTAAATGGCCCGGACGCCGCGCCGGTTTACAAGTTTCTGAAA
GCTAGCAAGCCTGGTTTGTTTGGATCAGCAAGAGTCAAATGGAATTTTACCAAGTTTCTCGTGGATAAAAATGGGAAGGTCGTTGAGAGATACGGAACATCGACGGCTCCAATGTCAATT
GAGAAGGACATCCAGAAGGCCCTTGATGAGGAATAA

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GCACGAGGTC CCCATTATTG CTGGAAAAAA AAGAACACGA GAAAAATCTA ATCCAAGAGA CGGGGATTCC AGAGCGCCCC CGCTCGGCTA GGGAAGGGAA GGAGAGGCGA AGCGGAGCGG  AGGCGAGATG GGGGCGGCCG AGTCCGTGCC GGAGACCTCC ATACACGAAT TCACCGTCAA GGATTGCAAC GGCAAGGAAG TGAGCCTGGA GACCTACAAG GGGAAGGTCC TCCTTGTTGT  TAACGTCGCC TCCAAATGTG GGTTCACCGA GGTTAATTAC ACGCAGCTGA CGGAGCTTTA TCGGAAGTAC AGGGACAAAG ACTTTGAGAT ATTGGCATTC CCCTGCAATC AGTTCTTGCG  ACAAGAGCCA GGTTCTAATC AGCAGATAAA AGACTTTGCT TGCACCAGAT TTAAAGCTGA ATACCCAGTT TTTCAGAAGG TGCGTGTAAA TGGCCCGGAC GCCGCGCCGG TTTACAAGTT  TCTGAAAGCT AGCAAGCCTG GTTTGTTTGG ATCAGCAAGA GTCAAATGGA ATTTTACCAA GTTTCTCGTG GATAAAAATG GGAAGGTCGT TGAGAGATAC GGAACATCGA CGGCTCCAAT  GTCAATTGAG AAGGACATCC AGAAGGCCCT TGATGAGGAA TAAAGATCCC ATGTCCTCTT GTCTCGTCTC ATCCATCACC CACACTGGCA GAAATAGGCA CTCGCAGAAG TATTCCGTCG  TAGCAACATT TGCTTGTTTG TAGTAAATCT GTATAATGCC CTCCTTTTCG CCTTCATGCT CATTGCGCTC GTGTAAGTAT TGGTTGTATT AACTAGCCAT TAATCTTCTC CGTCTTTTTT 
TTTCTTTTTG CCCTTTTTGG ACTGAAGAGT TAAGTCATGC TATATCGATG CAAAACTATG TAACATTGGT GAAGTATTAT ACTCCTACTA GTTTATAAGG TTTGTGTTTA CGCTC 

Retrieve as FASTA