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Entry information : GbGPx06 (gba_locus_4384_iso_6_len_976_ver_2)
Entry ID 5752
Creation 2007-08-20 (Christophe Dunand)
Last sequence changes 2015-02-18 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2015-02-18 (Christophe Dunand)
Peroxidase information: GbGPx06 (gba_locus_4384_iso_6_len_976_ver_2)
Name (synonym) GbGPx06 (gba_locus_4384_iso_6_len_976_ver_2)
Class Plant glutathione peroxidase    [Orthogroup: Gpx2001]
Taxonomy Eukaryota Viridiplantae Streptophyta Ginkgoopsida Ginkgoaceae Ginkgo
Organism Ginkgo biloba    [TaxId: 3311 ]
Cellular localisation N/D
Tissue type Meristems
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GbGPx06
start..stop		 S start..stop
AtrGPx01 296 7.34e-105 1..170 1..170
PabGPx99 295 2.71e-104 1..170 1..170
PpGPx06-2 294 6.73e-104 1..170 1..170
PtaGPx06-2 290 2.08e-102 1..170 1..170
Literature and cross-references GbGPx06 (gba_locus_4384_iso_6_len_976_ver_2)
Literature Brenner,E.D., Twigg,R.W., Runko,S.J., Katari,M.S., Dedhia,N.N., O'Shaughnessy,A.L., Balija,V., Martienssen,R.A., McCombie,R.W., Benfey,P., Coruzzi,G. and Stevenson,D.Expressed tag sequences from Ginkgo megasporophyll (NYBG).
EST ref. GenBank:   EX938406.1
Protein sequence: GbGPx06 (gba_locus_4384_iso_6_len_976_ver_2)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   170 (250)
PWM (Da):   %s   18736.61 (27695.2)  
PI (pH):   %s   6.52 (10.24) Peptide Signal:   %s   cut: 24 range:24-273
Sequence
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Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MGGNSSLAQN TVHDFSVKDI RGNDVDLSIY KGKVLLIVNV ASECGLTTTN YKELNELYPK YKDQGFEILA FPCNQFAGQE PGTNEQIAEV ACTRFKAEFP IFDKVEVNGD NAAPIYKFLK 
SSKGGIFGES IKWNFSKFLV DKDGHVVDRY APTTSPLKIE KDIKKLLGVA 

Retrieve as FASTA  
Remarks Complete sequence from 30 ESTs and RNA seq (mismatches for the 5'part which can be due to misassembly) .
CDS►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGGTGGAA ACTCATCGCT TGCCCAAAAT ACTGTTCATG ACTTCTCAGT CAAGGATATT AGGGGCAATG ATGTGGATCT GAGCATTTAC AAGGGCAAAG TTTTATTGAT AGTCAATGCT  GCGTCTGAAT GTGGGTTGAC TACTACTAAT TATAAGGAGT TGAACGAATT GTATCCAAAG TACAAAGATC AAGGATTCGA AATACTGGCC TTCCCATGCA ATCAGTTTGC TGGACAGGAG  CCAGGTACTA ACGAGCAGAT TGCAGAAGTG GCATGTACTC GTTTTAAAGC AGAGTTCCCT ATATTTGATA AGGTTGAAGT TAATGGTGAT AATGCAGCCC CTATCTATAA GTTTTTGAAA  TCAAGCAAAG GGGGCATTTT TGGCGAGAGT ATAAAATGGA ACTTCTCTAA ATTTTTGGTT GACAAAGATG GACATGTAGT GGACAGATAT GCACCTACTA CGTCTCCATT GAAGATTGAG 
AAAGACATCA AGAAGCTGTT AGGAGTTGCT TAA 

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CACGTTCCTC CTACGTTACC CCATTAAACC CTCCTATAAC CCTCACAACC TCCACATTCT AACACGGTCT AGGACTGAAT CATCTGCTGG CTGCTCTTTC TTGAACAATC GAAGACTGCC  CAATACAAGA TTTGATCGTT TTCGTAGTGG GTTTTCCGTT TATTATACCC CTGCCATTTT TTCAGACATA TCTTCAAAGT TTTCGACCAT GGGTGGAAAC TCATCGCTTG CCCAAAATAC  TGTTCATGAC TTCTCAGTCA AGGATATTAG GGGCAATGAT GTGGATCTGA GCATTTACAA GGGCAAAGTT TTATTGATAG TCAATGTTGC GTCTGAATGT GGGTTGACTA CTACTAATTA  TAAGGAGTTG AACGAATTGT ATCCAAAGTA CAAAGATCAA GGATTCGAAA TACTGGCCTT CCCATGCAAT CAGTTTGCTG GACAGGAGCC AGGTACTAAC GAGCAGATTG CAGAAGTGGC  ATGTACTCGT TTTAAAGCAG AGTTCCCTAT ATTTGATAAG GTTGAAGTTA ATGGTGATAA TGCAGCCCCT ATCTATAAGT TTTTGAAATC AAGCAAAGGG GGCATTTTTG GCGAGAGTAT  AAAATGGAAC TTCTCTAAAT TTTTGGTTGA CAAAGATGGA CATGTAGTGG ACAGATATGC ACCTACTACG TCTCCATTGA AGATTGAGAA AGACATCAAG AAGCTGTTAG GAGTTGCTTA  ATGCTTGAGA GAAGCAAATA TGGACTTTAT GTGCATATGA TAGCAAGAAA GAATAAGCAG CAATAATTTA TTAAATGTGG TTAGTTTTGG TTATTGCACA GTTGCATACT ATTGTTAGCA  TTTTGGCAGA TGTTTAGTGT TGGAAGTGCA CATTGTTGAT GTATACAGAG TGCCAATGTC TTACCTTTCT TGTGGTTCAA GTTTTTTATA AATAATAAAA GTCTTTATTC CCCCTAAAAA 
AAAAAAAAAA AAAAAC 

Retrieve as FASTA