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Entry information : PpaGPx02
Entry ID 5756
Creation 2007-08-20 (Christophe Dunand)
Last sequence changes 2007-08-20 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: PpaGPx02
Name PpaGPx02
Class Plant glutathione peroxidase    [Orthogroup: Gpx2001]
Taxonomy Eukaryota Viridiplantae Streptophyta Funariaceae Physcomitrella
Organism Physcomitrella patens    [TaxId: 3218 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PpaGPx02
start..stop		 S start..stop
PpaGPx01 282 2.76e-99 7..172 2..168
WnoGPx01 259 3.65e-89 3..172 73..241
OruGPx04 259 4.43e-89 3..172 64..232
AcvGPx06-2 256 5.23e-89 14..172 7..165
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 583514..583579 64 N° 2 584151..584227 75 N° 3 584404..584465 60 N° 4 584781..584899 117
N° 5 585011..585181 169 N° 6 585325..585354 28  
join(583514..583579,584151..584227,584404..584465,584781..584899,585011..585181, 585325..585354)


exon

Literature and cross-references PpaGPx02
Literature Fujita,T., Nishiyama,T., Shin-i,T., Kohara,Y. and Hasebe,M. Physcomitrella patens EST at a stage of the first asymmetric cell division of protoplasts.
DNA ref. Phytozome 12:   scaffold_115 (583514..585354)
EST ref. GenBank:   FC413638.1
Cluster/Prediction ref. UniGene:   Ppa.4093
Protein sequence: PpaGPx02
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   174 (497)
PWM (Da):   %s   19236.82 (54900.3)  
PI (pH):   %s   7.99 (5.44) Peptide Signal:   %s   cut: 33 range:20-516
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MEPVNAAAQVQSGSSIYDFVVKDIDGNDVELSKYKGKVLLIVNVASACGLTTTNYTELAGIYSKYKNDFEILAFPCNQFGGQEPGSNAQIKQFACTRFKAEFPIFDVDVNGPQEAPVYKFLKSQKRGSILGDTIKWNFAKFL
VDKNGNVVDRYAPTTPPSKIENDIQKYLRS*

Retrieve as FASTA  
Remarks Complete sequence from genomic (3 introns) aand 24 ESTs. Incorrect prediction fron Phytozome (first exon in missing) confirmed with ESTs.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAGCCCGTGAATGCTGCTGCCCAGGTGCAAAGTGGCAGCTCTATCTACGACTTCGTTGTAAAGAGGTATGGGTGTCGTTTTTCTTCTCCTTGTTAATTGAATGAGTGAGTCTCTCTT
GGCTGAATCGAATTTTAGCTTCATGTGGATCAATTACGTTCTTTCGCACTCCGAGCTTTGCATTTTTTGTTGGCGTTGGATGAAGAAGATGCTGCGTGTTGATTTCGGTTTTTAGTCTAT
CTTTTTCCTTGTTTGATTGTTCTGTCAGCTGAAGTTGTACAACACTGGTAGAATATGCACTAGTTGTGTGAGGACGGTTTAGAACGTCGACTTTTCACGTTGTTAAGCGAATTTTTGGAG
CATAAATGCGTAATGTAGACTGAGTTACGATTTTACAAAGTTCTCGAGTGGTTCAATTCTTTTTCTTTTTTTCTTTTCTTCCCTTTTAATTGGCTTCTATTCATTGAGGAAATTTTGTTT
CAGCTCGTCATCTCGAACCGATGTTCTCGTTTTCAAGTAGGGCACAGCACTGCGCCAGAGAATAACCGCATTTTATTGTAATCCTTGATAATACTGTGGCATTAACAACAACTGTAACAA
TTACAGTAACAATAACAATGCCCTCGTGAATGTGTGTAGGATATTGATGGGAACGATGTTGAGTTGAGCAAGTATAAAGGGAAGGTTTTGCTCATTGTCAACGTTGCTTCAGCATGTGGT
AAGCATGTGCTCAGCTAATATCAACTTTGGGATCATTCATGTGTAAGATTTCAAAATTTTGTGCGAAATGTAGTGCAATGATTTTATTAATGAGAAAGCTTGGTATTTGTCTACTATTGT
AATTCACAAGAGTAACAAATCTCAATTATTGCCATGATATGGATGGGTATGCAGTGGATTGACGACCACGAACTATACGGAGCTTGCGGGCATTTACTCCAAGTACAAGAATCAAGAGGT
GAGCGGATGTTCACCACTCTGGACTCAAAACCTTAAATGTCGACAGGGCATCCACTTTATTTGCTGGAAATTAGTAATTGCTACTCGCTTTTGATCTCTTCTGGCCTATTATCCCTCCCA
AAAAGAGTCTCTTAGTGACATGTCACTCCTCATGAAGATTACTTTTAGTCTGAATTGCTAGATATCTCATTTTCAAGGTAATGGTACGATTTGCGTTTTGAGCGTGTTCTTCGCACTCAT
GACGACCGTAAGGGTTGGCTGTTAAAATTTGTCTGCTGAGTTGCTGCCCACACTGTGTTTTTGAGACGTGCAGATTTTGAGATTTTGGCTTTCCCCTGCAATCAATTTGGAGGTCAGGAG
CCCGGTTCAAATGCACAGATCAAGCAATTCGCTTGCACAAGGTTCAAAGCCGAGTTCCCCATTTTTGACAAGAGGTAACACCCCCACTTTTCTGATCCGCAGACGCCTAGTTTTACAGAT
GCCTGTACTCTCCTGCTTTGTATCCTTGGTGTATGAGACTGACTGGCATATTGTTGTCCTTGCAGGTGGACGTTAATGGTCCTCAGGAGGCGCCCGTTTACAAGTTCCTGAAGTCTCAGA
AGAGAGGCAGCATTCTGGGAGACACCATCAAGTGGAATTTTGCAAAATTCCTTGTTGACAAGAACGGGAATGTCGTCGATCGCTATGCACCCACCACTCCACCATCAAAGATAGAGAGGT
AGTCTTCCTCTCCCAGAGTTATTATCATCTGTATGTTTTAAATAATGAAATTTTATGAAGGCGTCGCAACTGTCGTTGACTTCATGAATCATTGCCGTATGCTGAAACGATGGTGCTGTG
GCGTCTTTTCGAGTTGTCCAGAACGACATCCAGAAATACCTGAGAAGTTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAGCCCGTGAATGCTGCTGCCCAGGTGCAAAGTGGCAGCTCTATCTACGACTTCGTTGTAAAGGATATTGATGGGAACGATGTTGAGTTGAGCAAGTATAAAGGGAAGGTTTTGCTC
ATTGTCAACGTTGCTTCAGCATGTGGATTGACGACCACGAACTATACGGAGCTTGCGGGCATTTACTCCAAGTACAAGAATCAAGATTTTGAGATTTTGGCTTTCCCCTGCAATCAATTT
GGAGGTCAGGAGCCCGGTTCAAATGCACAGATCAAGCAATTCGCTTGCACAAGGTTCAAAGCCGAGTTCCCCATTTTTGACAAGGTGGACGTTAATGGTCCTCAGGAGGCGCCCGTTTAC
AAGTTCCTGAAGTCTCAGAAGAGAGGCAGCATTCTGGGAGACACCATCAAGTGGAATTTTGCAAAATTCCTTGTTGACAAGAACGGGAATGTCGTCGATCGCTATGCACCCACCACTCCA
CCATCAAAGATAGAGAACGACATCCAGAAATACCTGAGAAGTTAG

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CCTTGTCTCG AGGAATGCCC GCGTCGTCTC TTCGTCTCCC CTTCCCCATC CTCTGACATG GCCCTCTTCG TTGCTGCGTC GTCTTCCTCT CTCCCCTCTG CCCTCTCGCG TCTGCACTTT  TGCTCCTCAA ATCTGCCCAA GAACGTCGCG GCTTTTGCGT TCTCTCACCG CGCCACTGCT TCTTTTGCCT CCAGCTCTGT ATTTGGCAGG CGTCTTGTTG GGTCGTTGGT AGGGTTCACT  CTGGGGAACG CTGCCTCCTC CACCTGTGTA CGAGGCATGG AGCCCGTGAA TGCTGCTGCC CAGGTGCAAA GTGGCAGCTC TATCTACGAC TTCGTTGTAA AGGATATTGA TGGGAACGAT  GTTGAGTTGA GCAAGTATAA AGGGAAGGTT TTGCTCATTG TCAACGTTGC TTCAGCATGT GGATTGACGA CCACGAACTA TACGGAGCTT GCGGGCATTT ACTCCAAGTA CAAGAATCAA  GATTTTGAGA TTTTGGCTTT CCCCTGCAAT CAATTTGGAG GTCAGGAGCC CGGTTCAAAT GCACAGATCA AGCAATTCGC TTGCACAAGG TTCAAAGCCG AGTTCCCCAT TTTTGACAAG  GTGGACGTTA ATGGTCCTCA GGAGGCGCCC GTTTACAAGT TCCTGAAGTC TCAGAAGAGA GGCAGCATTC TGGGAGACAC CATCAAGTGG AATTTTGCAA AATTCCTTGT TGACAAGAAC  GGGAATGTCG TCGATCGCTA TGCACCCACC ACTCCACCAT CAAAGATAGA GAACGACATC CAGAAATACC TGAGAAGTTA GGCGTAATTA GTTCGGTTGA AGGGCATGGC GACGGGAGTT  AACGGTATTA CGCCCTGTGA TTTATTTCTA CTTTCCGGAA ACCGTGGAAT ATTTAGTCTT GCTATTGGCT TGTTCTCAAA ATGTTAGATT GTATTACCAA ATCCATTTTT GCCTCTAAAC 
CTTCCAGCTA AATTATTTTT ATCAACTAGT GGAGCAGTTA TCAGCTCAAA GAAGAAACAT ATTTCACCTG TATTTCATTC TATCTTTTAA AAAATGCG 

Retrieve as FASTA