Entry information : GmPrx[P]60
Entry ID 580
Creation 2005-06-21 (Christophe Dunand)
Last sequence changes 2011-10-10 (Christophe Dunand)
Sequence status theoretical translation / pseudogene
Reviewer Qiang Li
Last annotation changes 2011-12-13 (Qiang Li)
Peroxidase information: GmPrx[P]60
Name GmPrx[P]60
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Glycine
Organism Glycine max (soybean)    [TaxId: 3847 ]
Cellular localisation N/D
Tissue type Seedling epicotyls
Inducer Auxin treatment
Repressor N/D
Best BLASTp hits
Perox score E-value GmPrx[P]60
start..stop
S start..stop
GmPrx60 210 5e-69 1..137 196..332
GmPrx163 206 4e-67 1..137 202..338
GmPrx17 197 5e-64 1..137 202..338
EglPrx135 171 2e-53 1..136 197..331
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 38093695..38094153 459  
join(38093695..38094153)


exon

Literature and cross-references GmPrx[P]60
Literature Shoemaker,R et al, Public Soybean EST Project.
DNA ref. Phytozome 12:   Gm07 (38093695..38094153)
Protein sequence: GmPrx[P]60
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   153
PWM (Da):   %s   17134.6  
PI (pH):   %s   9.05
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GAHTIGYARC LTFKRRLFDS QGSGRPDPMI DFSLFLRLQN RRPNNDASNS NLAPLDAATI LTFDSVYYRN LLSETGLLES DQALIRDSRT ASMAYFYSTD QSSLYNDFAA SMVKLSNVGV 
LRGIQGQIRR TCGSLNYYVL DIFNFLAKPQ QYN 

Retrieve as FASTA  
Remarks Partial or Pseudogene sequence from genomic. Incorrect prediction from phytozome (Only the last exon).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GGAGCACATA CAATTGGTTA TGCTCGATGC TTGACCTTCA AAAGGAGACT TTTCGACTCT CAAGGCTCTG GCAGACCTGA TCCCATGATT GATTTTTCAC TTTTCTTAAG ATTGCAAAAT  AGGCGTCCAA ATAATGACGC TTCAAACAGC AATCTAGCTC CTCTGGATGC TGCAACTATT TTGACGTTCG ACAGTGTGTA TTATAGAAAT CTCTTGAGCG AAACAGGGCT TCTAGAATCT  GACCAAGCAC TAATTCGGGA TTCAAGGACT GCTTCTATGG CTTATTTTTA CAGCACCGAC CAATCTTCGT TATATAATGA TTTTGCTGCA TCCATGGTGA AGCTTAGTAA TGTAGGAGTA 
CTTAGAGGAA TACAAGGGCA AATTAGAAGG ACATGTGGCT CTTTAAACTA TTATGTGCTT GATATTTTCA ACTTCTTAGC AAAACCTCAA CAATATAAT 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GGAGCACATA CAATTGGTTA TGCTCGATGC TTGACCTTCA AAAGGAGACT TTTCGACTCT CAAGGCTCTG GCAGACCTGA TCCCATGATT GATTTTTCAC TTTTCTTAAG ATTGCAAAAT  AGGCGTCCAA ATAATGACGC TTCAAACAGC AATCTAGCTC CTCTGGATGC TGCAACTATT TTGACGTTCG ACAGTGTGTA TTATAGAAAT CTCTTGAGCG AAACAGGGCT TCTAGAATCT  GACCAAGCAC TAATTCGGGA TTCAAGGACT GCTTCTATGG CTTATTTTTA CAGCACCGAC CAATCTTCGT TATATAATGA TTTTGCTGCA TCCATGGTGA AGCTTAGTAA TGTAGGAGTA 
CTTAGAGGAA TACAAGGGCA AATTAGAAGG ACATGTGGCT CTTTAAACTA TTATGTGCTT GATATTTTCA ACTTCTTAGC AAAACCTCAA CAATATAAT 

Retrieve as FASTA