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Entry information : PtroTPO
Entry ID 5822
Creation 2009-01-28 (Christophe Dunand)
Last sequence changes 2010-12-08 (Marie Brette)
Sequence status partial
Reviewer Christophe Dunand
Last annotation changes 2011-08-12 (Christophe Dunand)
Peroxidase information: PtroTPO
Name PtroTPO
Class Thyroid peroxidase     [Orthogroup: TPO001]*
Taxonomy Eukaryota Metazoa Chordata Mammalia Hominidae Pan
Organism Pan troglodytes (chimpanzee)    [TaxId: 9598 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtroTPO
start..stop		 S start..stop
EcabTPO 1121 0 1..764 1..796
HsTPO01 911 0 1..447 1..447
HsTPO01 653 0 431..764 505..839
PpyTPO 897 0 1..447 1..447
PpyTPO 554 0 431..721 505..796
PabeTPO 897 0 1..447 1..447
PabeTPO 551 0 431..720 505..795
Literature and cross-references PtroTPO
Literature Hughes,J.F., Skaletsky,H., Pyntikova,T., Minx,P.J., Graves,T., Rozen,S., Wilson,R.K. and Page,D.C. Conservation of Y-linked genes during human evolution revealed by comparative sequencing in chimpanzee. Nature 437 (7055), 100-103 (2005).
DNA ref. GenBank:   NC_006469.2 (1386440..1476360)
Protein sequence: PtroTPO
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   764 (370)
PWM (Da):   %s   83158.17 (40188.4)  
PI (pH):   %s   6.46 (8.83) Peptide Signal:   %s   cut: 26 range:26-395
Sequence
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*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MRALAVLSVT LVMACTEAFF PFISRGKELL WGKPEESRVS SVLEESKRLV DTAMYATMQR NLKKRGILSP AQLLSFSKLP EPTSGVIARA AEIMETSIQA MKRKVNLKTQ QSQHPTDALS  EDLLSIIANM SGCLPYMLPP KCPNTCLANK YRPITGACNN RDHPRWGASN TALARWLPPV YEDGFSQPRG WNPGFLYNGF PLPPVREVTR HVIQVSNEVV TDDDRYSDLL MAWGQYIDHD  IAFTPQSTSK AAFGGGADCQ MTCENQNPCF PIQLPEEARP AAGTACLPFY RSSAACGTGD KGALFGNLST ANPRQQMNGL TSFLDASTVY GSSPALERQL RNWTSAEGLL RVHARLRDSG  RAYLPFAPPR APAACAPEPG IPGETRGPCF LAGDGRASEV PSLTALHTLW LREHNRLAAA LKALNAHWSA DAVYQEARKV VGALHQVxxx xxxxxxxGGL DPLIRGLLAR PAKLQVQDQL  MNEELTERLF VLSNSSTLDL ASINLQRGRD HGLPGYNEWR EFCGLPRLET PADLSTAITS RSVADKILDL YKHPDNVDVW LGGLAENFLP RARTGPLFAC LIGKQMKALR DGDWFWWENS  HVFTDAQRRE LEKHSLSRVI CDNTGLTRVP VDAFQVGKFP EDFESCDSIP GVNLEAWRET FPQDDKCGFP ESVENGDFVH CEESGRRVLV YSCRHGYELQ GREQLTCTQE GWDFQPPLCK 
DVNECADGAH PPCHASARCR NTKGGFQCLC ADPYELGDDG RTCV 

Retrieve as FASTA  
Remarks Partial sequence from genomic (chromo 2a). Gap included in genomic DNA (about 200 am ac missing).
join(1386440..1386533,1395679..1395763,1405658..1405827,1408470..1408602,1423863..1423992,1426250..1426456,1445822..1446368,1458061..1458231,1464243..1464480,1466628..1466836,1467239..1467409,1476179..1476310)
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