View Redoxidase 5918

Entry information : PtritVCPo

Entry ID	5918
Creation	2007-10-23 (Christophe Dunand)
Last sequence changes	2007-10-23 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2013-09-04 (Catherine Mathe (Scipio))

Peroxidase information: PtritVCPo

Name

PtritVCPo

Class

No haem, Vanadium chloroperoxidase [Orthogroup: VCPo001]

Taxonomy

Eukaryota Fungi Ascomycota Dothideomycetes Pleosporaceae Pyrenophora

Organism

Pyrenophora tritici-repentis [TaxId: 45151 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	PtritVCPo start..stop	S start..stop
EdVCPo	876	0	3..621	4..613
CinaVCPo	833	0	1..621	1..609
PnoVCPo	701	0	13..590	16..592
MgrVCPo	484	2.45e-165	9..587	7..572

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '5918' 'join(403162..405027)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	403162..405027	1864
join(403162..405027)

Literature and cross-references PtritVCPo

Literature	Birren,B., Lander,E., Galagan,J., Nusbaum,C., Devon,K., Ma,L.-J., Jaffe,D., Butler,J., Alvarez,P., Gnerre,S., Grabherr,M., Kleber,M., Mauceli,E., Brockman,W., MacCallum,I.A., Young,S., LaButti,K., DeCaprio,D., Crawford,M., Koehrsen,M., Engels,R., Montgomery,P., Pearson,M., Howarth,C., Larson,L., White,J., Yandava,C., Kodira,C., Zeng,Q., O'Leary,S., Alvarado,L., Ciuffetti,L. and Pandelova,I. The Broad Institute Genome Sequencing Platform.
DNA ref.	JGI genome: supercontig_1.3 (403162..405027)

Literature

Birren,B., Lander,E., Galagan,J., Nusbaum,C., Devon,K., Ma,L.-J., Jaffe,D., Butler,J., Alvarez,P., Gnerre,S., Grabherr,M., Kleber,M., Mauceli,E., Brockman,W., MacCallum,I.A., Young,S., LaButti,K., DeCaprio,D., Crawford,M., Koehrsen,M., Engels,R., Montgomery,P., Pearson,M., Howarth,C., Larson,L., White,J., Yandava,C., Kodira,C., Zeng,Q., O'Leary,S., Alvarado,L., Ciuffetti,L. and Pandelova,I. The Broad Institute Genome Sequencing Platform.

DNA ref.

JGI genome: supercontig_1.3 (403162..405027)

Protein sequence: PtritVCPo

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	621
PWM (Da):	69072.48
PI (pH):	5.66

Sequence
Send to BLAST
Send to Peroxiscan

*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

MANFTPVRLP KVEEDEVYNK NYILYWNNVG LDLNRVTHTL GGPQTGPPIS ARALGMLQLA IHDAYFTIKP SADFTTFLTP NAEIDAYRLP DPTHSDDARQ AVAGAAVTML SMLYMRPAEM PRPSPISNDT YAQLEYIIES SMTNAPGGCN TVSYSFNFGK AVATKFFDLL FHEEGANQRG YTPTFAPFKF NDEPTHPVDL VPEDANEPGG NIVPRRQYHA PFYGTRAKRF ATQTDHIIAD PPGIRSGAGE VTEYDDAIRE VYAMGGAASL NTTKRTPHQT VQGMFWAYDG AKLIGTPPRL YNQIIRKIAV AYKQEDNLAE SEINNADFAR LLALVNVAMA DAGIFSWKEK WQFEFWRPLS GVRADSLRDP KLVDRGDPFW LTLGAPATNS DSLPFKPPFP AYPSGHATFG GAAFQMVRKY YNGRPGLGSW ADDEPDNIAV EFVSEELNGI SRDLRQPHDP KRDITDQPGT VRTRLPRHFS SCWEMMFENA VSRIFLGVHW RFDAAAAKDI LVPTTKKDVY AVDDKGASLF KNVEDIRYRT KSTREGFEGK YPIGGVPLGI EIANEIFDNG LVPTPPELQP VVQGMPQPTP QPPQHQGPPR
KMEKLPKPKD EDQVPMMDVE P

Retrieve as FASTA

Remarks

Complete sequence from genomic (no intron). No EST. Strain="Pt-1C-BFP".

DNA ►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

ATGGCAAATT TCACTCCTGT TCGGCTTCCT AAGGTCGAGG AAGATGAGGT GTACAATAAG AACTACATCC TCTACTGGAA TAATGTCGGC TTAGACCTCA ACCGTGTTAC ACACACCTTG GGAGGCCCTC AGACCGGTCC ACCCATCTCC GCCAGAGCTC TAGGCATGCT TCAATTGGCT ATCCACGATG CCTACTTTAC TATCAAGCCC TCTGCCGACT TCACAACCTT CTTGACACCC AACGCCGAAA TCGACGCATA CCGTCTGCCC GATCCGACTC ATTCGGACGA TGCCCGCCAG GCGGTAGCGG GAGCAGCAGT CACGATGCTG TCGATGCTTT ACATGAGGCC TGCGGAAATG CCCAGACCCT CCCCCATATC CAATGACACC TATGCCCAGC TCGAGTATAT TATAGAATCC TCGATGACCA ACGCACCCGG CGGCTGCAAT ACGGTATCCT ACAGTTTCAA CTTCGGCAAG GCAGTAGCCA CTAAATTCTT CGACCTGCTT TTCCACGAGG AAGGTGCCAA TCAACGTGGC TACACCCCCA CATTCGCTCC TTTCAAGTTC AACGATGAAC CCACTCATCC TGTTGACCTT GTCCCCGAGG ACGCCAACGA GCCCGGTGGT AACATAGTTC CTAGACGCCA GTATCATGCC CCCTTCTATG GTACGAGAGC CAAGCGCTTT GCGACACAGA CTGATCACAT TATTGCCGAT CCACCAGGCA TTCGTTCCGG CGCTGGTGAG GTCACCGAAT ATGACGACGC TATCCGTGAA GTTTACGCCA TGGGTGGAGC AGCCAGTCTC AACACTACCA AGCGCACTCC CCACCAGACA GTCCAAGGCA TGTTCTGGGC TTACGATGGC GCAAAGTTGA TCGGTACACC ACCGCGACTA TACAACCAGA TCATACGCAA AATCGCAGTG GCGTACAAGC AAGAAGATAA CCTGGCCGAA AGCGAGATCA ACAACGCCGA CTTTGCTCGT CTCCTCGCTC TGGTGAACGT GGCTATGGCT GATGCAGGCA TCTTCTCCTG GAAGGAAAAG TGGCAGTTTG AGTTCTGGCG CCCGCTTTCC GGTGTCCGCG CCGATAGTCT TCGTGACCCT AAACTTGTAG ACCGTGGCGA CCCATTCTGG CTTACGCTCG GGGCTCCAGC TACAAACTCA GATTCACTTC CCTTCAAGCC GCCCTTCCCC GCCTACCCCT CTGGTCACGC CACGTTCGGT GGTGCAGCCT TCCAGATGGT ACGCAAGTAC TACAACGGGC GTCCTGGACT TGGTTCCTGG GCAGACGACG AGCCAGACAA CATCGCCGTC GAATTTGTCT CTGAGGAACT GAATGGAATA AGCAGAGATC TCCGCCAACC CCACGACCCC AAACGCGACA TTACCGACCA ACCCGGTACC GTGCGTACCC GTCTCCCCCG CCACTTCTCT TCGTGCTGGG AGATGATGTT CGAAAACGCC GTCTCACGCA TCTTCCTAGG TGTGCACTGG CGCTTCGACG CTGCGGCCGC CAAGGACATC TTGGTTCCCA CGACGAAGAA GGATGTCTAC GCTGTAGACG ACAAGGGCGC TTCTCTGTTC AAGAATGTTG AGGATATTCG TTATAGGACG AAGAGTACAA GGGAGGGATT TGAGGGTAAA TACCCCATTG GTGGTGTACC CCTGGGTATT GAGATCGCGA ATGAGATTTT CGACAACGGA CTCGTGCCTA CGCCGCCGGA ATTGCAGCCT GTGGTGCAGG GTATGCCGCA GCCTACACCG CAGCCTCCGC AGCATCAGGG GCCACCAAGG
AAGATGGAGA AGTTGCCAAA GCCGAAGGAT GAGGATCAGG TTCCTATGAT GGATGTGGAG CCCTAG

Retrieve as FASTA

CDS►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

Retrieve as FASTA