Entry information : PtritVCPo
Entry ID 5918
Creation 2007-10-23 (Christophe Dunand)
Last sequence changes 2007-10-23 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2013-09-04 (Catherine Mathe (Scipio))
Peroxidase information: PtritVCPo
Name PtritVCPo
Class No haem, Vanadium chloroperoxidase    [Orthogroup: VCPo001]
Taxonomy Eukaryota Fungi Ascomycota Dothideomycetes Pleosporaceae Pyrenophora
Organism Pyrenophora tritici-repentis    [TaxId: 45151 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtritVCPo
start..stop
S start..stop
EdVCPo 876 0 3..621 4..613
CinaVCPo 833 0 1..621 1..609
PnoVCPo 701 0 13..590 16..592
MgrVCPo 484 2e-165 9..587 7..572
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 403162..405027 1866  
join(403162..405027)


exon

Literature and cross-references PtritVCPo
Literature Birren,B., Lander,E., Galagan,J., Nusbaum,C., Devon,K., Ma,L.-J., Jaffe,D., Butler,J., Alvarez,P., Gnerre,S., Grabherr,M., Kleber,M., Mauceli,E., Brockman,W., MacCallum,I.A., Young,S., LaButti,K., DeCaprio,D., Crawford,M., Koehrsen,M., Engels,R., Montgomery,P., Pearson,M., Howarth,C., Larson,L., White,J., Yandava,C., Kodira,C., Zeng,Q., O'Leary,S., Alvarado,L., Ciuffetti,L. and Pandelova,I. The Broad Institute Genome Sequencing Platform.
DNA ref. JGI genome:   supercontig_1.3 (403162..405027)
Protein sequence: PtritVCPo
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   621
PWM (Da):   %s   69072.48  
PI (pH):   %s   5.66
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MANFTPVRLP KVEEDEVYNK NYILYWNNVG LDLNRVTHTL GGPQTGPPIS ARALGMLQLA IHDAYFTIKP SADFTTFLTP NAEIDAYRLP DPTHSDDARQ AVAGAAVTML SMLYMRPAEM  PRPSPISNDT YAQLEYIIES SMTNAPGGCN TVSYSFNFGK AVATKFFDLL FHEEGANQRG YTPTFAPFKF NDEPTHPVDL VPEDANEPGG NIVPRRQYHA PFYGTRAKRF ATQTDHIIAD  PPGIRSGAGE VTEYDDAIRE VYAMGGAASL NTTKRTPHQT VQGMFWAYDG AKLIGTPPRL YNQIIRKIAV AYKQEDNLAE SEINNADFAR LLALVNVAMA DAGIFSWKEK WQFEFWRPLS  GVRADSLRDP KLVDRGDPFW LTLGAPATNS DSLPFKPPFP AYPSGHATFG GAAFQMVRKY YNGRPGLGSW ADDEPDNIAV EFVSEELNGI SRDLRQPHDP KRDITDQPGT VRTRLPRHFS  SCWEMMFENA VSRIFLGVHW RFDAAAAKDI LVPTTKKDVY AVDDKGASLF KNVEDIRYRT KSTREGFEGK YPIGGVPLGI EIANEIFDNG LVPTPPELQP VVQGMPQPTP QPPQHQGPPR 
KMEKLPKPKD EDQVPMMDVE P 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no intron). No EST. Strain="Pt-1C-BFP".
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCAAATT TCACTCCTGT TCGGCTTCCT AAGGTCGAGG AAGATGAGGT GTACAATAAG AACTACATCC TCTACTGGAA TAATGTCGGC TTAGACCTCA ACCGTGTTAC ACACACCTTG  GGAGGCCCTC AGACCGGTCC ACCCATCTCC GCCAGAGCTC TAGGCATGCT TCAATTGGCT ATCCACGATG CCTACTTTAC TATCAAGCCC TCTGCCGACT TCACAACCTT CTTGACACCC  AACGCCGAAA TCGACGCATA CCGTCTGCCC GATCCGACTC ATTCGGACGA TGCCCGCCAG GCGGTAGCGG GAGCAGCAGT CACGATGCTG TCGATGCTTT ACATGAGGCC TGCGGAAATG  CCCAGACCCT CCCCCATATC CAATGACACC TATGCCCAGC TCGAGTATAT TATAGAATCC TCGATGACCA ACGCACCCGG CGGCTGCAAT ACGGTATCCT ACAGTTTCAA CTTCGGCAAG  GCAGTAGCCA CTAAATTCTT CGACCTGCTT TTCCACGAGG AAGGTGCCAA TCAACGTGGC TACACCCCCA CATTCGCTCC TTTCAAGTTC AACGATGAAC CCACTCATCC TGTTGACCTT  GTCCCCGAGG ACGCCAACGA GCCCGGTGGT AACATAGTTC CTAGACGCCA GTATCATGCC CCCTTCTATG GTACGAGAGC CAAGCGCTTT GCGACACAGA CTGATCACAT TATTGCCGAT  CCACCAGGCA TTCGTTCCGG CGCTGGTGAG GTCACCGAAT ATGACGACGC TATCCGTGAA GTTTACGCCA TGGGTGGAGC AGCCAGTCTC AACACTACCA AGCGCACTCC CCACCAGACA  GTCCAAGGCA TGTTCTGGGC TTACGATGGC GCAAAGTTGA TCGGTACACC ACCGCGACTA TACAACCAGA TCATACGCAA AATCGCAGTG GCGTACAAGC AAGAAGATAA CCTGGCCGAA  AGCGAGATCA ACAACGCCGA CTTTGCTCGT CTCCTCGCTC TGGTGAACGT GGCTATGGCT GATGCAGGCA TCTTCTCCTG GAAGGAAAAG TGGCAGTTTG AGTTCTGGCG CCCGCTTTCC  GGTGTCCGCG CCGATAGTCT TCGTGACCCT AAACTTGTAG ACCGTGGCGA CCCATTCTGG CTTACGCTCG GGGCTCCAGC TACAAACTCA GATTCACTTC CCTTCAAGCC GCCCTTCCCC  GCCTACCCCT CTGGTCACGC CACGTTCGGT GGTGCAGCCT TCCAGATGGT ACGCAAGTAC TACAACGGGC GTCCTGGACT TGGTTCCTGG GCAGACGACG AGCCAGACAA CATCGCCGTC  GAATTTGTCT CTGAGGAACT GAATGGAATA AGCAGAGATC TCCGCCAACC CCACGACCCC AAACGCGACA TTACCGACCA ACCCGGTACC GTGCGTACCC GTCTCCCCCG CCACTTCTCT  TCGTGCTGGG AGATGATGTT CGAAAACGCC GTCTCACGCA TCTTCCTAGG TGTGCACTGG CGCTTCGACG CTGCGGCCGC CAAGGACATC TTGGTTCCCA CGACGAAGAA GGATGTCTAC  GCTGTAGACG ACAAGGGCGC TTCTCTGTTC AAGAATGTTG AGGATATTCG TTATAGGACG AAGAGTACAA GGGAGGGATT TGAGGGTAAA TACCCCATTG GTGGTGTACC CCTGGGTATT  GAGATCGCGA ATGAGATTTT CGACAACGGA CTCGTGCCTA CGCCGCCGGA ATTGCAGCCT GTGGTGCAGG GTATGCCGCA GCCTACACCG CAGCCTCCGC AGCATCAGGG GCCACCAAGG 
AAGATGGAGA AGTTGCCAAA GCCGAAGGAT GAGGATCAGG TTCCTATGAT GGATGTGGAG CCCTAG 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCAAATT TCACTCCTGT TCGGCTTCCT AAGGTCGAGG AAGATGAGGT GTACAATAAG AACTACATCC TCTACTGGAA TAATGTCGGC TTAGACCTCA ACCGTGTTAC ACACACCTTG  GGAGGCCCTC AGACCGGTCC ACCCATCTCC GCCAGAGCTC TAGGCATGCT TCAATTGGCT ATCCACGATG CCTACTTTAC TATCAAGCCC TCTGCCGACT TCACAACCTT CTTGACACCC  AACGCCGAAA TCGACGCATA CCGTCTGCCC GATCCGACTC ATTCGGACGA TGCCCGCCAG GCGGTAGCGG GAGCAGCAGT CACGATGCTG TCGATGCTTT ACATGAGGCC TGCGGAAATG  CCCAGACCCT CCCCCATATC CAATGACACC TATGCCCAGC TCGAGTATAT TATAGAATCC TCGATGACCA ACGCACCCGG CGGCTGCAAT ACGGTATCCT ACAGTTTCAA CTTCGGCAAG  GCAGTAGCCA CTAAATTCTT CGACCTGCTT TTCCACGAGG AAGGTGCCAA TCAACGTGGC TACACCCCCA CATTCGCTCC TTTCAAGTTC AACGATGAAC CCACTCATCC TGTTGACCTT  GTCCCCGAGG ACGCCAACGA GCCCGGTGGT AACATAGTTC CTAGACGCCA GTATCATGCC CCCTTCTATG GTACGAGAGC CAAGCGCTTT GCGACACAGA CTGATCACAT TATTGCCGAT  CCACCAGGCA TTCGTTCCGG CGCTGGTGAG GTCACCGAAT ATGACGACGC TATCCGTGAA GTTTACGCCA TGGGTGGAGC AGCCAGTCTC AACACTACCA AGCGCACTCC CCACCAGACA  GTCCAAGGCA TGTTCTGGGC TTACGATGGC GCAAAGTTGA TCGGTACACC ACCGCGACTA TACAACCAGA TCATACGCAA AATCGCAGTG GCGTACAAGC AAGAAGATAA CCTGGCCGAA  AGCGAGATCA ACAACGCCGA CTTTGCTCGT CTCCTCGCTC TGGTGAACGT GGCTATGGCT GATGCAGGCA TCTTCTCCTG GAAGGAAAAG TGGCAGTTTG AGTTCTGGCG CCCGCTTTCC  GGTGTCCGCG CCGATAGTCT TCGTGACCCT AAACTTGTAG ACCGTGGCGA CCCATTCTGG CTTACGCTCG GGGCTCCAGC TACAAACTCA GATTCACTTC CCTTCAAGCC GCCCTTCCCC  GCCTACCCCT CTGGTCACGC CACGTTCGGT GGTGCAGCCT TCCAGATGGT ACGCAAGTAC TACAACGGGC GTCCTGGACT TGGTTCCTGG GCAGACGACG AGCCAGACAA CATCGCCGTC  GAATTTGTCT CTGAGGAACT GAATGGAATA AGCAGAGATC TCCGCCAACC CCACGACCCC AAACGCGACA TTACCGACCA ACCCGGTACC GTGCGTACCC GTCTCCCCCG CCACTTCTCT  TCGTGCTGGG AGATGATGTT CGAAAACGCC GTCTCACGCA TCTTCCTAGG TGTGCACTGG CGCTTCGACG CTGCGGCCGC CAAGGACATC TTGGTTCCCA CGACGAAGAA GGATGTCTAC  GCTGTAGACG ACAAGGGCGC TTCTCTGTTC AAGAATGTTG AGGATATTCG TTATAGGACG AAGAGTACAA GGGAGGGATT TGAGGGTAAA TACCCCATTG GTGGTGTACC CCTGGGTATT  GAGATCGCGA ATGAGATTTT CGACAACGGA CTCGTGCCTA CGCCGCCGGA ATTGCAGCCT GTGGTGCAGG GTATGCCGCA GCCTACACCG CAGCCTCCGC AGCATCAGGG GCCACCAAGG 
AAGATGGAGA AGTTGCCAAA GCCGAAGGAT GAGGATCAGG TTCCTATGAT GGATGTGGAG CCCTAG 

Retrieve as FASTA