Entry information : BoPrx49-1Ca_other
Entry ID 6066
Creation 2010-05-17 (Christophe Dunand)
Last sequence changes 2010-05-17 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-05-10 (Christophe Dunand)
Peroxidase information: BoPrx49-1Ca_other
Name BoPrx49-1Ca_other
Class Class III peroxidase    [Orthogroup: Prx001]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica
Organism Brassica oleracea (Cauliflower)    [TaxId: 3712 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BoPrx49-1Ca_other
start..stop
S start..stop
BrPrx49-1Ab_other 645 0 1..331 1..331
BrPrx49-2Aa_other 630 0 1..331 1..331
AalpPrx09 625 0 1..331 1..331
BoPrx49-1Cb_other 615 0 15..331 15..330
Literature and cross-references BoPrx49-1Ca_other
Literature Delehaunty,K., Fewell,G., Fulton,L., McCombie,W.R., Miner,T., Nash ,W., Rabinowicz,P.D. and Wilson,R.K. Whole genome shotgun reads from Brassica oleracea Unpublished (2002)
DNA ref. GenBank:   FI693323.1 [5' end]   BH493258.1 [3' end]   BZ477245.1 [Fragment]
Protein sequence: BoPrx49-1Ca_other
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   331 (309)
PWM (Da):   %s   36133.24 (33682.9)  
PI (pH):   %s   9.52 (9.79) Peptide Signal:   %s   cut: 23 range:23-331
Sequence 0
Send to BLAST
Send to Peroxiscan
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MARLSTFLLV ISLLCFLPLC LCHKSYGGKL SPGFYAHSCP QAGEIVRSVV AKAVARETRM AASLIRLHFH DCFVKGCDGS LLLDSSGRIT SEKNSNPNRK SARGFDVVDQ IKAQLEKECP  GTVSCADALT LAARDSSVLT GGPSWMVPLG RRDSRSASLS GSNNNIPAPN NTFQTILTKF KRQGLDVTDL VALSGSHTIG FSRCTSFRQR LYNQSGNGRP DMTLEQSFAA NLRQRCPRSG 
GDQILSVLDK VSPAKFDNSY FKNLMENMGL LNSDQVLFSS NDKSRELVKK YAEDQGEFFK QFAESMIKMG NISPLTGSSG EIRKDCRKIN S 

Retrieve as FASTA  
Remarks Complete sequence from GSS (3 introns).
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
AATAAACCAA AAAAAAAAGA GGCTAATTAG TCAAACTAAG CATGTAATGT TGGGTACCAA ACCTTAACTT TTGTCTCTTT TAATCTTCTT GTAAATCTTG AGATGTAGCT AATAACAACT  CCACTTCTTA CTTCTTCTTC AAAGCCTTTT ACTATAAATA CCTCATTTCT CTCCCCTTGC TTCATATCCC TCCTCCTCAT CACAAACTCT TCTCCTTTCT TCATCTTCTT GTTTAAAGTA  ATGGCAAGAC TCAGTACCTT TCTCCTTGTT ATTTCTCTCC TTTGCTTTCT CCCTCTCTGT CTCTGTCACA AGAGCTATGG AGGCAAACTC TCCCCAGGTT TTTATGCACA TTCATGCCCT  CAAGCTGGGG AGATAGTGAG ATCAGTTGTA GCTAAAGCTG TTGCTAGAGA GACTCGTATG GCTGCTTCCT TGATAAGACT TCATTTCCAC GACTGTTTCG TTAAGGTTTG GTTAAAAATT  TCTAACATTT TATCAGTTTT TTTTTTTGTT TATTACGTAC TGAGCAAGGT AACTGTGAAA TGTAGGGTTG TGATGGCTCT TTGCTTCTAG ACAGCAGTGG GAGGATAACG AGTGAGAAAA  ACTCAAACCC TAACCGCAAA TCAGCTCGTG GATTTGATGT TGTCGACCAG ATCAAAGCTC AACTTGAGAA AGAATGCCCT GGAACTGTCT CTTGCGCTGA TGCTCTCACC CTAGCCGCTA  GAGACTCTTC TGTTCTTGTA AGTCTCCTCC ACAACCTCTC TTGTCTGAAA AAATTAGCTG ATTCGGTTTG GTTCTTTGGT TTTAGACTGG TGGACCAAGC TGGATGGTTC CATTGGGAAG  AAGAGATTCA AGAAGTGCAA GCTTGAGTGG TTCCAACAAC AACATCCCTG CACCAAACAA CACTTTCCAG ACAATTCTCA CAAAGTTCAA ACGTCAAGGA CTTGATGTCA CTGACCTTGT  TGCTCTCTCC GGTAAGCTTC CCTTCACTTT GTGAGAGTTG CTTCACATGC ACGGAACTCC ATTAAAAAAT CTAATACGTT TTACTCTTTT CAGGGAGTCA CACCATTGGA TTCTCGAGAT  GCACGAGTTT CAGACAGAGG CTATACAACC AGTCTGGAAA CGGTCGTCCA GACATGACAC TGGAACAATC CTTCGCTGCT AACTTGCGCC AGAGGTGTCC AAGATCCGGA GGGGACCAGA  TTCTCTCGGT GCTGGACAAG GTCAGCCCGG CGAAGTTCGA CAACAGCTAC TTCAAGAACT TGATGGAGAA CATGGGTTTG TTGAACTCGG ACCAGGTTCT GTTCAGCAGC AACGATAAGT  CTAGAGAGCT TGTAAAGAAG TACGCAGAGG ATCAAGGAGA GTTTTTCAAG CAGTTTGCGG AGTCCATGAT CAAGATGGGA AACATCTCTC CGTTGACGGG TTCGAGTGGG GAAATCAGGA 
AGAG 

Retrieve as FASTA