Entry information : PtRboh06 (POPTR_0012s11340 / Potri.012G111600)
Entry ID 6071
Creation 2008-01-25 (Christophe Dunand)
Last sequence changes 2010-07-15 (Christophe Dunand)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2012-03-08 (Qiang Li)
Peroxidase information: PtRboh06 (POPTR_0012s11340 / Potri.012G111600)
Name (synonym) PtRboh06 (POPTR_0012s11340 / Potri.012G111600)
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh001]
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtRboh06
start..stop
S start..stop
PtRboh07 1742 0 1..909 1..909
CclRboh05 1488 0 4..909 1..929
NtRboh04_BelW3 1471 0 11..909 16..938
NbRboh02 1470 0 11..909 16..939
Gene structure Fichier Exons


exon

Literature and cross-references PtRboh06 (POPTR_0012s11340 / Potri.012G111600)
Literature REFERENCE 1 JGI, The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313 (5793), 1596-1604 (2006).
REFERENCE 2 Ralph,S., et al., Genomics of hybrid poplar (Populus trichocarpax deltoides) interacting with forest tent caterpillars (Malacosoma disstria): normalized and full-length cDNA libraries, expressed sequence tags, and a cDNA microarray for the study of insect-induced defences. Mol. Ecol. 15 (5), 1275-1297 (2006).

DNA ref. Phytozome 12:   Chr12 (13327744..13322589)
Cluster/Prediction ref. UniGene:   Pth.15866  Pth.13516 [3' end]
Omic ref. ePlant:   Potri.012G111600
Protein sequence: PtRboh06 (POPTR_0012s11340 / Potri.012G111600)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   909 (283)
PWM (Da):   %s   102784.51 (31616.9) Transmb domain:   %s   o345-364i487-509o529-551i710-727o
PI (pH):   %s   9.4 (7.66) Peptide Signal:   %s   cut: 30 range:30-312
Sequence
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MQDMGREDHHSDSEMSGSERLAYSGPLSGPLNKRPGRKSARFSIP
GTTTSKDEQYVEITLDVRNDSVAVHSVKAANGVEEDPEMALLAKGLEKRSASNVLRTASARIRQVSHEIKRLASF
SKRPPPGRLDRSKSAAAHALKGLKFISKTDGGAGWAAVEKR
FDEITASTDGLLPRARFCECI
GMKESKDFAGELFNALARKRNMHCDSISKAELREFWDQISNQSFDSRLQTFFDMVDKD
ADGRITEEEVR
IITLSASANKLSNIQKQAEEYAALIMEELDPENHGYILIENLEMLLLQGSNQSVRGESRNLSHMLSQKLKPTLDSNPLNRWCRSTKYFLLDNWQRVWVMALWIVFMASL
FAYKYIQYRRREAYEVMGHCVCMAKGAAETLKLNMALILLPVCRNTLTWLRNKTKLGVVVPFDDNLNFHK
VIAVGIAVGVGIHGISHLACDFPRLLQASEEKWELMQQFFGDQPSSYWHF
VKSKEGVTGIVMVVLMAIAFTLATPWFRRNKLNLPTWLKKLTGFNAFWYSHHLFVIVYTLLVVHGYYLYLTHKWYKKT
TWMYLAVPVILYGSERLIRALRSSIKAVTIQKVAIYPGNVLA
LHMSKPQGFRYKSGQYMFVNCAAVSPFE
WHPFSITSAPGDDYLSVHIRTLGDWTRQLRTVFSVCQPPPDGKSGLLRSDCFQGHNSNLPRVLIDGPYGAPAQDYKKYEVVLLVGLGIGATP
MISIVKDIVSNIRTMEEEENAVENGAGGIGNSPSTKIPSPYTQKRKENFKTRRAYFYWVTREQGSFDWFKGVMNEVAEIDHNHVIELHNYCTSVYEEGDARSALIAMLQSINHAKNGVDI
VSGTRVKSHFAKPNWRNVYKRTALNHPDSR
GVFYCGAPALTKELRQLALDFSHKTSTKFDFHKENF

Retrieve as FASTA  
Remarks Complete sequence from genomic (Chromo 2, 11 introns) and 3 ESTs.
DNA
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CDS
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