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Entry information : PtRboh07 (POPTR_0015s12130 / Potri.015G109800)
Entry ID 6072
Creation 2008-01-25 (Christophe Dunand)
Last sequence changes 2010-07-15 (Christophe Dunand)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2012-03-08 (Qiang Li)
Peroxidase information: PtRboh07 (POPTR_0015s12130 / Potri.015G109800)
Name (synonym) PtRboh07 (POPTR_0015s12130 / Potri.015G109800)
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh001]
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtRboh07
start..stop		 S start..stop
PtRboh06 1770 0 1..909 1..909
NtRboh04_BelW3 1472 0 11..909 16..938
CclRboh05 1470 0 2..909 4..929
NbRboh02 1468 0 11..909 16..939
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '6072' 'complement(join(12523744..12523853,12524399..12524955,12525892..12525962,12526086..12526188,12526265..12526380,12526471..12526566,12526654..12527037,12527129..12527551,12527697..12527810,12527959..12528007,12528121..12528280,12528407..12528953))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 12528407..12528953 545 N° 2 12528121..12528280 158 N° 3 12527959..12528007 47 N° 4 12527697..12527810 112
N° 5 12527129..12527551 421 N° 6 12526654..12527037 382 N° 7 12526471..12526566 94 N° 8 12526265..12526380 114
N° 9 12526086..12526188 101 N° 10 12525892..12525962 69 N° 11 12524399..12524955 555 N° 12 12523744..12523853 108
complement(join(12523744..12523853,12524399..12524955,12525892..12525962,1252608 6..12526188,12526265..12526380,12526471..12526566,12526654..12527037,12527129..1 2527551,12527697..12527810,12527959..12528007,12528121..12528280,12528407..12528 953))


exon

Literature and cross-references PtRboh07 (POPTR_0015s12130 / Potri.015G109800)
Literature REFERENCE 1 JGI, The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313 (5793), 1596-1604 (2006).
DNA ref. Phytozome 12:   scaffold_15 (12528953..12523744)
Omic ref. ePlant:   Potri.015G109800
Protein sequence: PtRboh07 (POPTR_0015s12130 / Potri.015G109800)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   909 (298)
PWM (Da):   %s   102631.5 (31914.1) Transmb domain:   %s   o345-367i487-509o529-551i710-727o
PI (pH):   %s   9.51 (9.64) Peptide Signal:   %s   cut: 28 range:28-325
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MQDTGREDHHSDTELSGSERVAYSGPLSGPLNKRPGKKSARFNIP
ETTTSKDEQYVEITLDVRNDFVAVHSVKPSHGVKEDPEMTLLAKGPDKRSVSNVVRTASARIRQVSHEIKRLASF
SKRPPPGRLDRSKSAAAHALKGLKFISKTDGGAGWAAVEKR
FDEITASTEGLLPRARFCECIGMKESKEFAGELFSSLARKRNIQCDSINKAELREFWEQISNQSFDSRLQTFFDMVDKD
ADGRITEEEVRIITLSASANKLSNIQKQAEEYAALIMEELDPENHGYIMIENLEMLLLQGPSQSAGGESRNLSRMLSQKLKPTLDSNPLNRWGRGTRYFLLDNWQRVWVMALWIAVMASL
FAYKYVQYRRRAAYVVMGHCVCMAKGAAETLKLNMALILLPVCRNTLTWLRNKTKLGVAVPFDDNLNFHKVIAVGVAVGVGIHGISHLACDFPRLLRASEEKWELMQQFFGDQPSSYWHF
VKSKEGVTGILMVVLMAIAFTLATPWFRRNKLNLPTWLKKLTGFNAFWYSHHLFVIVYTLLIVHGYYLYLTHEWYKKTTWMYLTVPVMLYGGERFIRALRSSIKAVTIQKVAIYPGNVLA
LHMSKPQGFRYKSGQYMFVNCSAVSPFEWHPFSITSAPGDDYLSVHIRTLGDWTLQLRTVFSACQPPPNGKSGLLRADCFQGHSPNFPRVLIDGPYGAPAQDYKKYEVLLLVGLGIGATP
MISIVKDIASNIRAMEEEEKALENGTDGAGNSPLTRTPSPNAHKRKESFKTRRAYFYWVTREQGSFDWFKGVMNEVAELDHNHVIELHNYCTSVYEEGDARSALIAMLQSINHAKNGVDI
VSGTRVKSHFAKPDWRNVYKRTALNHPDSRGVFYCGAPALTKELRQLALDFSHKTSTKFDFHKENF

Retrieve as FASTA  
Remarks Complete sequence from genomic (Chromo 15, 11 introns). No EST, only from other populus species. Incorrect prediction from Phytozome.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCAAGATACGGGTAGAGAAGATCATCACTCTGACACAGAGCTATCGGGGAGCGAAAGGGTAGCTTACAGTGGTCCATTGAGCGGACCTCTGAATAAAAGACCTGGAAAAAAGAGTGCG
AGGTTTAATATACCAGAAACAACCACATCCAAGGATGAACAATACGTGGAGATCACTCTTGATGTCCGAAATGATTTTGTGGCTGTACACAGCGTTAAACCTTCTCATGGCGTCAAAGAA
GATCCTGAGATGACATTACTTGCTAAAGGTCCAGATAAAAGATCTGTTTCCAATGTTGTGAGAACTGCTTCAGCAAGAATTAGACAGGTTTCTCATGAAATAAAACGGTTGGCTTCGTTC
TCAAAGAGGCCTCCTCCTGGTCGCCTTGACAGGTCTAAATCTGCAGCTGCTCATGCTTTAAAAGGACTAAAGTTTATCAGCAAGACTGATGGTGGTGCAGGATGGGCTGCTGTGGAAAAG
CGTTTCGATGAAATTACTGCTTCTACTGAGGGCTTGCTTCCTCGTGCGCGATTCTGTGAATGTATAGGTAATTCAATGCAAATTTCCTTCCTTCTAACTTGTAGATATGTGAATGTGTTT
GGTTTGGACTGAATGTTATTTGCTTTAGTTAGTTTGAGTTTTGAAGGGCCTGTGTAAATTCATGTAATGGCAGGAGAATGAAGGAGTCAAAGGAGTTTGCAGGAGAGCTGTTCAGTTCAC
TTGCAAGGAAGCGGAATATACAATGTGATTCGATCAACAAAGCTGAGCTGAGGGAATTCTGGGAACAGATTTCCAACCAAAGTTTCGACTCCAGGCTCCAAACTTTCTTTGACATGTAAA
TGAATCTCTCTCTTTCACTCAAAGATTATGTCTTTCATTTTAATTAAAAAGTCCTCCACCTTATATTGATTTCAAGCTGGAACTTATACCAAGTGATGTAAAATGCAGGGGGTGGATAAA
GATGCTGATGGCAGAATCACAGAAGAGGAAGTCAGAGAGGTGCTACCGTCTTTTGAATGCCTTACTGAACATTTCTTTTTAGCTTTACCCTTTTTGTCTTGAATGAAACACTTGACTTGA
ATCAAAGCTTGTGCCTTGTGTCAGAAAAGGATTTGGCCTAAGAAAATTTGGCAATTTTTATATGCAGATATCATTACCCTTAGCGCTTCTGCAAATAAACTGTCAAATATCCAGAAACAA
GCTGAGGAATATGCAGCATTAATCATGGAAGAGTTAGATCCAGAAAATCATGGATACATCATGGTAATAAACCACAAGTTTAAAGCATTATTAATGTCTTGAGGGTCTGCTTGTTTGGAG
TTTTTTTTTTATGCAGATTGCTGATACTCTTATTAATGATGCATGGTTCCCTGTTTTTTTTTTTTTAAAAAAAAAAAAAAAACAACAGATATAGAGAACCTGGAAATGCTTCTATTGCAA
GGACCAAGCCAGTCGGCAGGAGGAGAAAGCCGAAATCTGAGCCGTATGCTAAGCCAGAAGCTTAAGCCTACATTGGATAGCAACCCATTAAACAGATGGGGCAGAGGCACCAGGTATTTC
TTATTAGACAACTGGCAGAGAGTTTGGGTAATGGCTCTATGGATTGCTGTTATGGCTAGCCTATTTGCATACAAGTATGTGCAGTATCGACGCAGAGCGGCGTATGTGGTGATGGGTCAT
TGTGTATGCATGGCCAAGGGTGCAGCTGAGACACTCAAACTGAATATGGCTCTAATTCTACTACCTGTCTGCCGAAACACTCTCACCTGGCTCAGGAACAAAACCAAATTAGGTGTCGCG
GTTCCTTTTGACGACAACCTCAATTTCCACAAGGTTCTATCTAGCATCTACGTACCCTCTAGTATCTACGCTTAATGTCTTCTAAACTGGAAGCACGGAAACTAATGGTGGTGTCCTTGT
TCAGGTGTTATAGCAGTTGGAGTTGCAGTTGGAGTTGGTATCCATGGGATTTCTCATCTAGCGTGTGACTTCCCTCGCCTTCTTCGTGCAAGTGAAGAAAAGTGGGAGCTCATGCAGCAA
TTTTTCGGGGATCAACCTTCAAGTTACTGGCATTTTGTCAAGTCCAAGGAAGGAGTAACTGGGATCCTCATGGTAGTGTTGATGGCTATAGCCTTCACACTAGCCACCCCTTGGTTCAGA
CGTAATAAGCTCAATTTGCCGACATGGCTCAAGAAGCTCACCGGTTTCAATGCATTTTGGTATTCTCACCATCTCTTCGTCATCGTCTACACCCTGCTCATCGTGCACGGTTATTACCTC
TACCTGACTCATGAATGGTACAAGAAGACGGTAAGTGCCTCTCAGTTATCATATATTCTTTTATTTCACTGCATTGATTGAAATCTCAGTCCATCCTTGAACCTCCACCATTGGCAGACA
CCTGGATGTACTTGACAGTTCCTGTTATGCTTTACGGGGGTGAAAGATTCATTAGGGCACTGAGATCAAGCATCAAGGCTGTTACCATACAAAAAGTAACTATTTTTAACCATTTTTACA
TCGACTTAATTACTTTTCAGAAATGATTTTAGAAGTTGTGCTAATTTCTTCTGGTTGTTTTGAAGGTGTGGCAATTTATCCTGGAAATGTCCTGGCACTTCACATGTCAAAGCCTCAAGG
ATTTAGATACAAGAGTGGGCAATACATGTTTGTCAATTGTTCTGCTGTCTCTCCATTCGAATGGTAGTTAAACTTCAAAATATTCCTACCCCTTGTGATATCCATTTGTAAATACTCATG
GTAAATCACATGTCAACAGGCGCACCCATTTTCTATTACTTCAGCCCCTGGAGATGACTACCTTAGTGTTCATATCAGAACTCTTGGTGATTGGACACTGCAGCTTCGAACAGTGTTCTC
AGAGGTGTGTTTTCTTACAAGTGCATTTGTTATTCTTCTAGAAGAAAAAAAGAAGTCTTACTATATTATGTCCTGTTCATTTCCAAGATTGTATATGTGCAACAAAGTAAGTGTTTTTTT
TTCTCAGGCGCATGCCAACCACCTCCTAATGGGAAGAGTGGACTTCTCAGAGCTGACTGCTTCCAAGGACACAGCCCAAAGTGAGCATTAATTTTTATGATATTTTCTATTCACGTATAA
TTACTAGCTAAAATAAAATAAAAATCCCTTCTGATGAATGATAATATCATAACCATTTCAAAAAGAAAGGAAAGCATATAGAGGGTTTGTGGATCATGGTATGCATAAACGTGACAAGCA
TTACATGAGGTCAAACATCTCAGTCCAGAGCGAATCTCAAGTGGTTGGATACCACAACCTTATTGCCGATGTACCTACCCTAGGCGAGCAGGTGCTTTCTTCACTTTGTGTGTATCTTAG
CTATTTGCTGTTAGGGTCTTTCCTCTCATACAAGTAATCTATCAAGGGCTACTAGATAAGATCTACCTTATTTTCGTAAACATAAGAGCTATGGAGTACAGCCATGTGTATTAGTCCACT
GTTATGAACAAATGAGAAGCACCAAACCAATCAGTGTTTACTTCACTGGGAATATGAATTATAGAATGCTGTCTTTTTCAGAGTGGTATCTTTGCATCATTTGTCGTTACCGCACTATAA
TAAAGGAAGGCGGGATTAGCAATATCATTGATAGGAAGAGAAAAAGTTTGCTAGGTTACTTGACAAACTTCAAGTTTAGAAAACATTTGTGCATGCGCTTAATTAGTATAGTTAAATAAT
GCCAACTGTGTTTTAAAATATTTTGCACATCCAATAATCCAAGTTTTAGACATTATTAGACACGGAAAGGATAGAGATTAATTTGTCATCATGGACAGCCTGCCCCATCGTTGAAAACGA
CATGTAACAAACATGTAAACAATGCCACCCACGAGATGTAGATGCGCATCAATGAGCTGCAAGTAGTCCTTTTTCACATGGATATTCCCTAGCATAGAAAGATGTCTGCCTAGAAAAAAA
GTGTTTCCTGTTTAGGTTGTGCATAATGATGTGATGATTTTTTATCCTATGAGCAGTTTTTCCCAAGAGTCTTGATTGACGGTCCATATGGAGCACCAGCACAAGACTACAAGAAATATG
AGGTGTTATTGCTCGTTGGCCTAGGAATTGGAGCAACCCCAATGATCAGCATTGTCAAGGACATAGCGAGTAACATCAGGGCCATGGAGGAAGAAGAGAAAGCATTAGAAAATGGTACTG
ATGGGGCAGGCAATAGCCCGTTAACTAGAACTCCAAGCCCTAATGCACACAAAAGAAAAGAAAGCTTCAAGACAAGGAGAGCATACTTCTATTGGGTGACAAGAGAACAAGGTTCCTTTG
ACTGGTTTAAAGGGGTTATGAATGAAGTGGCTGAATTAGACCATAACCATGTCATAGAGCTTCACAACTACTGTACTAGTGTTTATGAAGAGGGTGATGCAAGGTCTGCTCTAATTGCCA
TGCTTCAATCCATTAATCATGCCAAGAATGGTGTGGACATTGTCTCTGGCACACGAGTCAAGTCTCACTTCGCCAAGCCTGATTGGCGTAATGTCTACAAGCGCACTGCGCTTAACCACC
CTGATTCTCGGGTTGGTAAGTGAACTTCTCCAATCCTATAGTTTATTACGTGTTATATGCACTAGAATCTGATACTGCAAGCTTCCATATTCTTTTGAACTGGTTCATTCCTTTTGCATA
ATTAAGCCCTCAGCTCTTAAAAAGAAACTCTTCTTTATGCTTAAAAAGATGTCTTTGTTTACTATGTTTGTCACTTTCTCAAAAAGAAAATATATTGAAGTGAGTGCTAGTGCTTTTGCA
AAGGATGAAGATAATTACATTACTAGTGCTTTTGTAAAGGATGATGATAGTTACATTAAGTGTTTATCTCCTATTAAATCAACATTAGCATGATCCATTAAAGTTCCTTATGACCCTTGC
TCTCTAGCAGAGTAAAAAGATATTTTACCGGGTCCATGTAAGAAAGTTGAAAGATACTGATACCAGAAAGGAAGGATTGGGTATTTTACTATATTTGCTGAGGATAACAAATCAAATCTT
TCGTACAGTGTTTATGCCATGCATTATTTATCACTTTTAGAAATGAAAGTTGAGATACCTGTAACTATTCACAATTGCAGGAGAGTGTTTTATTGTGGGGCACCAGCATTGACAAAAGAG
CTGCGCCAGCTAGCCTTGGATTTCTCTCACAAGACCAGCACTAAGTTTGATTTTCACAAAGAAAACTTCTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCAAGATACGGGTAGAGAAGATCATCACTCTGACACAGAGCTATCGGGGAGCGAAAGGGTAGCTTACAGTGGTCCATTGAGCGGACCTCTGAATAAAAGACCTGGAAAAAAGAGTGCG
AGGTTTAATATACCAGAAACAACCACATCCAAGGATGAACAATACGTGGAGATCACTCTTGATGTCCGAAATGATTTTGTGGCTGTACACAGCGTTAAACCTTCTCATGGCGTCAAAGAA
GATCCTGAGATGACATTACTTGCTAAAGGTCCAGATAAAAGATCTGTTTCCAATGTTGTGAGAACTGCTTCAGCAAGAATTAGACAGGTTTCTCATGAAATAAAACGGTTGGCTTCGTTC
TCAAAGAGGCCTCCTCCTGGTCGCCTTGACAGGTCTAAATCTGCAGCTGCTCATGCTTTAAAAGGACTAAAGTTTATCAGCAAGACTGATGGTGGTGCAGGATGGGCTGCTGTGGAAAAG
CGTTTCGATGAAATTACTGCTTCTACTGAGGGCTTGCTTCCTCGTGCGCGATTCTGTGAATGTATAGGAATGAAGGAGTCAAAGGAGTTTGCAGGAGAGCTGTTCAGTTCACTTGCAAGG
AAGCGGAATATACAATGTGATTCGATCAACAAAGCTGAGCTGAGGGAATTCTGGGAACAGATTTCCAACCAAAGTTTCGACTCCAGGCTCCAAACTTTCTTTGACATGGTGGATAAAGAT
GCTGATGGCAGAATCACAGAAGAGGAAGTCAGAGAGATCATTACCCTTAGCGCTTCTGCAAATAAACTGTCAAATATCCAGAAACAAGCTGAGGAATATGCAGCATTAATCATGGAAGAG
TTAGATCCAGAAAATCATGGATACATCATGATAGAGAACCTGGAAATGCTTCTATTGCAAGGACCAAGCCAGTCGGCAGGAGGAGAAAGCCGAAATCTGAGCCGTATGCTAAGCCAGAAG
CTTAAGCCTACATTGGATAGCAACCCATTAAACAGATGGGGCAGAGGCACCAGGTATTTCTTATTAGACAACTGGCAGAGAGTTTGGGTAATGGCTCTATGGATTGCTGTTATGGCTAGC
CTATTTGCATACAAGTATGTGCAGTATCGACGCAGAGCGGCGTATGTGGTGATGGGTCATTGTGTATGCATGGCCAAGGGTGCAGCTGAGACACTCAAACTGAATATGGCTCTAATTCTA
CTACCTGTCTGCCGAAACACTCTCACCTGGCTCAGGAACAAAACCAAATTAGGTGTCGCGGTTCCTTTTGACGACAACCTCAATTTCCACAAGGTTATAGCAGTTGGAGTTGCAGTTGGA
GTTGGTATCCATGGGATTTCTCATCTAGCGTGTGACTTCCCTCGCCTTCTTCGTGCAAGTGAAGAAAAGTGGGAGCTCATGCAGCAATTTTTCGGGGATCAACCTTCAAGTTACTGGCAT
TTTGTCAAGTCCAAGGAAGGAGTAACTGGGATCCTCATGGTAGTGTTGATGGCTATAGCCTTCACACTAGCCACCCCTTGGTTCAGACGTAATAAGCTCAATTTGCCGACATGGCTCAAG
AAGCTCACCGGTTTCAATGCATTTTGGTATTCTCACCATCTCTTCGTCATCGTCTACACCCTGCTCATCGTGCACGGTTATTACCTCTACCTGACTCATGAATGGTACAAGAAGACGACC
TGGATGTACTTGACAGTTCCTGTTATGCTTTACGGGGGTGAAAGATTCATTAGGGCACTGAGATCAAGCATCAAGGCTGTTACCATACAAAAAGTGGCAATTTATCCTGGAAATGTCCTG
GCACTTCACATGTCAAAGCCTCAAGGATTTAGATACAAGAGTGGGCAATACATGTTTGTCAATTGTTCTGCTGTCTCTCCATTCGAATGGCACCCATTTTCTATTACTTCAGCCCCTGGA
GATGACTACCTTAGTGTTCATATCAGAACTCTTGGTGATTGGACACTGCAGCTTCGAACAGTGTTCTCAGAGGCATGCCAACCACCTCCTAATGGGAAGAGTGGACTTCTCAGAGCTGAC
TGCTTCCAAGGACACAGCCCAAATTTCCCAAGAGTCTTGATTGACGGTCCATATGGAGCACCAGCACAAGACTACAAGAAATATGAGGTGTTATTGCTCGTTGGCCTAGGAATTGGAGCA
ACCCCAATGATCAGCATTGTCAAGGACATAGCGAGTAACATCAGGGCCATGGAGGAAGAAGAGAAAGCATTAGAAAATGGTACTGATGGGGCAGGCAATAGCCCGTTAACTAGAACTCCA
AGCCCTAATGCACACAAAAGAAAAGAAAGCTTCAAGACAAGGAGAGCATACTTCTATTGGGTGACAAGAGAACAAGGTTCCTTTGACTGGTTTAAAGGGGTTATGAATGAAGTGGCTGAA
TTAGACCATAACCATGTCATAGAGCTTCACAACTACTGTACTAGTGTTTATGAAGAGGGTGATGCAAGGTCTGCTCTAATTGCCATGCTTCAATCCATTAATCATGCCAAGAATGGTGTG
GACATTGTCTCTGGCACACGAGTCAAGTCTCACTTCGCCAAGCCTGATTGGCGTAATGTCTACAAGCGCACTGCGCTTAACCACCCTGATTCTCGGGTTGGAGTGTTTTATTGTGGGGCA
CCAGCATTGACAAAAGAGCTGCGCCAGCTAGCCTTGGATTTCTCTCACAAGACCAGCACTAAGTTTGATTTTCACAAAGAAAACTTCTAA

Retrieve as FASTA