Entry information : PtRboh07 (POPTR_0015s12130 / Potri.015G109800)
Entry ID 6072
Creation 2008-01-25 (Christophe Dunand)
Last sequence changes 2010-07-15 (Christophe Dunand)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2012-03-08 (Qiang Li)
Peroxidase information: PtRboh07 (POPTR_0015s12130 / Potri.015G109800)
Name (synonym) PtRboh07 (POPTR_0015s12130 / Potri.015G109800)
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh001]
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtRboh07
start..stop
S start..stop
PtRboh06 1770 0 1..909 1..909
NtRboh04_BelW3 1472 0 11..909 16..938
CclRboh05 1470 0 2..909 4..929
NbRboh02 1468 0 11..909 16..939
Gene structure Fichier Exons


exon

Literature and cross-references PtRboh07 (POPTR_0015s12130 / Potri.015G109800)
Literature REFERENCE 1 JGI, The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313 (5793), 1596-1604 (2006).
DNA ref. Phytozome 12:   scaffold_15 (12528953..12523744)
Omic ref. ePlant:   Potri.015G109800
Protein sequence: PtRboh07 (POPTR_0015s12130 / Potri.015G109800)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   909 (298)
PWM (Da):   %s   102631.5 (31914.1) Transmb domain:   %s   o345-367i487-509o529-551i710-727o
PI (pH):   %s   9.51 (9.64) Peptide Signal:   %s   cut: 28 range:28-325
Sequence
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MQDTGREDHHSDTELSGSERVAYSGPLSGPLNKRPGKKSARFNIP
ETTTSKDEQYVEITLDVRNDFVAVHSVKPSHGVKEDPEMTLLAKGPDKRSVSNVVRTASARIRQVSHEIKRLASF
SKRPPPGRLDRSKSAAAHALKGLKFISKTDGGAGWAAVEKR
FDEITASTEGLLPRARFCECI
GMKESKEFAGELFSSLARKRNIQCDSINKAELREFWEQISNQSFDSRLQTFFDMVDKD
ADGRITEEEVR
IITLSASANKLSNIQKQAEEYAALIMEELDPENHGYIMIENLEMLLLQGPSQSAGGESRNLSRMLSQKLKPTLDSNPLNRWGRGTRYFLLDNWQRVWVMALWIAVMASL
FAYKYVQYRRRAAYVVMGHCVCMAKGAAETLKLNMALILLPVCRNTLTWLRNKTKLGVAVPFDDNLNFHK
VIAVGVAVGVGIHGISHLACDFPRLLRASEEKWELMQQFFGDQPSSYWHF
VKSKEGVTGILMVVLMAIAFTLATPWFRRNKLNLPTWLKKLTGFNAFWYSHHLFVIVYTLLIVHGYYLYLTHEWYKKT
TWMYLTVPVMLYGGERFIRALRSSIKAVTIQKVAIYPGNVLA
LHMSKPQGFRYKSGQYMFVNCSAVSPFE
WHPFSITSAPGDDYLSVHIRTLGDWTLQLRTVFSACQPPPNGKSGLLRADCFQGHSPNFPRVLIDGPYGAPAQDYKKYEVLLLVGLGIGATP
MISIVKDIASNIRAMEEEEKALENGTDGAGNSPLTRTPSPNAHKRKESFKTRRAYFYWVTREQGSFDWFKGVMNEVAELDHNHVIELHNYCTSVYEEGDARSALIAMLQSINHAKNGVDI
VSGTRVKSHFAKPDWRNVYKRTALNHPDSR
GVFYCGAPALTKELRQLALDFSHKTSTKFDFHKENF

Retrieve as FASTA  
Remarks Complete sequence from genomic (Chromo 15, 11 introns). No EST, only from other populus species. Incorrect prediction from Phytozome.
DNA
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CDS
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