The peroxidases and oxidases database
Entry information : PtRboh08 (POPTR_0016s11970 / Potri.016G112200)
Entry ID 6076
Creation 2008-01-28 (Christophe Dunand)
Last sequence changes 2008-01-28 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2016-02-11 (Christophe Dunand)
Peroxidase information: PtRboh08 (POPTR_0016s11970 / Potri.016G112200)
Name (synonym) PtRboh08 (POPTR_0016s11970 / Potri.016G112200)
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh003]
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtRboh08
start..stop		 S start..stop
PtRboh05 1519 0 1..852 1..846
EgrRboh06 1190 0 6..852 3..857
EglRboh06 1187 0 6..852 3..857
EguRboh06 1185 0 6..852 3..857
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 11496342..11496735 394 N° 2 11496832..11496994 163 N° 3 11497065..11497113 49 N° 4 11497226..11497339 114
N° 5 11497421..11498230 810 N° 6 11498400..11498495 96 N° 7 11498573..11498688 116 N° 8 11498770..11498872 103
N° 9 11498959..11499059 101 N° 10 11499144..11499309 166 N° 11 11499406..11499534 129 N° 12 11499641..11499769 129
N° 13 11499863..11499941 79 N° 14 11500060..11500169 110  
join(11496342..11496735,11496832..11496994,11497065..11497113,11497226..11497339 ,11497421..11498230,11498400..11498495,11498573..11498688,11498770..11498872,114 98959..11499059,11499144..11499309,11499406..11499534,11499641..11499769,1149986 3..11499941,11500060..11500169)


exon

Literature and cross-references PtRboh08 (POPTR_0016s11970 / Potri.016G112200)
DNA ref. Phytozome 12:   Chr16 (11496342..11500169)
Cluster/Prediction ref. Genebank:   7487456
Omic ref. ePlant:   Potri.016G112200
Protein sequence: PtRboh08 (POPTR_0016s11970 / Potri.016G112200)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   852 (690)
PWM (Da):   %s   97529.64 (78127.8) Transmb domain:   %s   o299-317i384-406o430-452i480-502o512-529i671-688o
PI (pH):   %s   9.84 (8.83) Peptide Signal:   %s   cut: 23 range:23-712
Sequence 1250
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MGSKTESKRWMLESIEIDRMRGVPVNDEPKATLPPKEPADAFIKRSASNLGASLRRTTSSALRKSGVLSSKPPLPKIERTASSASRGLKSLRFLDRTMTGKEMDAWRSIERRFDQFAVHERLPKDKFGICIGLGDSKEFAGEIFHAIARRKNICPANGITKDELKLFWEDMTKQDLDSRLGIFFDMCDKNGDGRLSELEVRVIELSASANKLTNLKQHAAVYAALIMEELDPDHLGYIGLWELETLLRGMVNNEDQTTKLDEKTHNLTNAMIPRRYRTPVTKFLTVSVEYIHENWRRIWVIALWLAVNFVLIFWKFKEFEKSPLFKISSYCVCLAKASAESLKFNMALILLPVCRRTLTKLRSSFLGTFIPFDDNISFHKTIALAIVIGTLAHTLAHVLCNIPLLSSCPEGKFMLFAGPLFHYQQPTYWFFMRSIVGVTGILMILIMGFSFTLATHHFRKNVVKLPGVFHRLAGFNAFWYAHHLLALAYLLCILHGYFLIFEKPWYAKTTWMYLIGPVLFYATERVFTKNQERFHRVDVIKAIIYTGNVLALYMGKPPGFKYESGMYLFIKCPDLSKFEWHPFSITSAPGDNNLSVHIRTVGDWTTELKNLFAVCEPPRDTKQNQGRLKRMETKALSNSNFDQIQATFPKILIKGPFGAPAQNYKKFDILLLIGLGIGATPFISILKDLLNQIKSNAAESRDQRMGSTDKKGPERAYFYWVTREQSSFDWFKGVMDDIADYDDNNIIEMHNYLTSVYEEGDARSALIAMVQKLQHAKNGLDVVSQSRIRTHFSRPNWRKVFTQMAETHKFSRIGVFYCGSALLVKPLRELCQEFTLNSSTRFQFHKENF

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 16, 13 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGAAGCAAAACGGAATCAAAAAGGTGGATGCTTGAGAGCATTGAAATTGATAGGATGCGGGGTGTTCCTGTTAATGATGAACCTAAAGCCACCTTACCGCCCAAAGAACCTGCTGAT
GCATTCATCAAGAGGAGTGCAAGTAATCTTGGGGCATCCCTCAGAAGGACTACAAGTAGTGCCTTGAGGAAGAGTGGGGTTCTCTCTTCGAAACCTCCTCTCCCCAAGATAGAAAGAACA
GCATCATCAGCTTCTAGAGGACTTAAAAGCCTAAGGTTTCTTGATAGAACAATGACAGGAAAGGAAATGGATGCATGGAGATCCATCGAAAGGCGTTTTGATCAATTTGCAGTTCATGAA
AGGCTCCCTAAGGACAAATTTGGAATCTGCATTGGTATGCTTTCGAAATCTTTCGTTGTTGACAGCATGCTTTTTCTCCTATCTTTTCAATATAAAAAACACAAATTGAACTTCATTCCC
TTTTTTGCAGGACTAGGAGATTCAAAAGAGTTTGCAGGAGAAATATTTCATGCAATTGCCAGGCGTAAGAATATATGCCCCGCAAATGGGATAACAAAAGATGAGTTGAAATTGTTTTGG
GAAGACATGACTAAACAAGATCTTGATTCTCGTCTTGGAATATTTTTTGATATGTAAGAAATCCCCCTTGTGAAGTCTAAACTGTTAAAGGGTTAACTTTAAGCTGACATAATGATTTAA
TAGGTGCGACAAGAATGGGGATGGGAGGCTTTCGGAGTTGGAAGTGAGGGAGGTGTGGCTATATTGCCCTTCTGCATAATTGTTATTTTCCTTTTCTTTTGTTTTTTTTTTCTTCCTCTT
CACATCACGATATTTCAATTTTCTGATTTTATGTTTTGCCAAAGGTTATAGAGTTGAGTGCCTCTGCAAACAAGCTCACAAATCTTAAACAGCATGCGGCAGTCTATGCAGCTCTAATCA
TGGAAGAACTTGATCCTGATCATCTTGGATATATAGGGGTTGGTATTTATGCAAAAACTCTGGTTTCAAATTTTGTGACTGTGTGGCAATTAGAAACCCTACTTTTTCTAGTTTTGCAGC
TATGGGAGCTTGAAACTCTGCTAAGAGGGATGGTGAATAATGAAGATCAAACGACGAAGCTCGATGAAAAAACGCATAATCTCACAAATGCCATGATCCCAAGAAGATATAGGACTCCTG
TTACCAAATTCTTGACTGTGTCAGTAGAATATATTCATGAGAACTGGAGGAGAATATGGGTTATCGCGTTGTGGTTAGCTGTAAACTTCGTACTCATTTTTTGGAAGTTTAAGGAGTTCG
AGAAATCACCGCTATTCAAAATCTCAAGTTATTGTGTCTGTCTTGCCAAGGCTTCTGCCGAGAGTCTCAAGTTTAATATGGCCCTCATTCTTCTTCCTGTCTGCAGAAGAACACTTACTA
AGCTTAGATCATCATTTCTCGGCACCTTTATCCCTTTCGATGACAACATAAGCTTTCACAAGACGATTGCTTTGGCCATAGTAATTGGGACTCTAGCTCATACTCTAGCACATGTGCTTT
GTAATATTCCGTTGTTGAGTTCATGCCCAGAAGGCAAATTCATGCTATTTGCTGGACCATTGTTCCATTACCAACAGCCAACTTATTGGTTCTTCATGCGAAGCATTGTAGGCGTAACCG
GAATTCTGATGATCCTTATAATGGGGTTCTCATTTACTTTGGCGACACACCATTTCCGAAAGAACGTCGTTAAGTTACCAGGGGTATTTCACAGATTGGCAGGGTTTAATGCCTTTTGGT
ATGCGCATCATCTGCTCGCCCTAGCATATCTACTGTGCATTTTGCATGGCTACTTCTTAATATTTGAAAAGCCTTGGTATGCCAAAACGGTATGCACAGCCCTCAGCTAGCTACTTCTTC
ATTAAGCATAACCTTTTTCTTCCATTTGTGCTTCAACAATTCTGAATGCAATATTTTCATGACAAAAAAATTTCTCTTCTGAACATATATAGGTTAAAGCGGTTGCTGAAACTAATTGTG
TTATCTAACTTTCCACAGACATGGATGTATCTCATTGGCCCAGTATTGTTCTATGCCACTGAGAGAGTCTTCACAAAAAATCAGGAACGCTTTCACCGTGTTGATGTCATTAAGGTCTGT
GTTATTGATGTTTATTGTCCTCATCCATGATATTAATTCATAAAACTCATCGTGTACTTTGGACATTACAGGCAATTATATATACAGGGAATGTTCTTGCTCTATACATGGGCAAGCCTC
CAGGATTTAAGTACGAAAGTGGAATGTACCTCTTTATCAAATGCCCGGATTTGTCCAAGTTTGAATGGTAATCAATTGATCTCCGATAGTGTTTTCTGTTCCATAATACATCTCTTTAGT
AAAAAAATTCAGTTCTTATTTCATATAGGCATCCCTTCTCCATCACTTCTGCACCAGGAGATAACAATTTGAGTGTCCACATAAGAACTGTGGGTGATTGGACTACAGAACTCAAAAACT
TATTTGCGAAGGTTATGGCTTGATTGGTGTCTCTCTATATCCATGCAACTGAGGCAGATTTAGTGACATGTTATTTGCAAATGTTATATTTTCGCAGGTCTGTGAGCCCCCCCGGGATAC
TAAACAAAACCAAGGAAGGCTAAAGAGAATGGAAACTAAAGCATTGTCAAACTCAAACTTCGATCAGATACAAGCAACGTCAGTAAATTAATTCTTAAATAATCTATACTTGAGATTTTG
TGAAAACTAAAACTAAAATAGCCCCCTTTTCACCTGAGGCAGATTTCCAAAGATCCTGATCAAAGGACCATTTGGAGCCCCCGCTCAGAATTACAAAAAGTTTGACATATTACTGCTCAT
AGGTCTAGGAATTGGAGCAACTCCATTTATCAGCATTTTGAAGGATCTGCTCAATCAGATCAAATCAAATGCAGCGGAGTCGAGGAGGGTACGTTACGTATAGTGCAAAGCACACATCAC
TGCCATAAGATTGCTTAGACAAATAAGTTGAAAATCAATTCAGCTAACATATGATTGCACGCAGGACCAACGAATGGGTTCAACTGATAAAAAGGGTCCAGAAAGAGCATACTTTTACTG
GGTCACAAGAGAACAAAGTTCTTTTGATTGGTTCAAGGGTGTCATGGACGATATTGCAGACTATGATGATAATGTGGGTTTTGATAGCTGAAAAATGTCCTCATTTTACAAATTCTCAGC
CCGTCAAGGGTTTCTAATCTAACCAGTAATTATTCCTTTGGAACTTTTCAATGTCTCAGAATATAATTGAAATGCACAACTACTTGACTAGTGTGTATGAAGAAGGAGATGCAAGGTCTG
CACTTATTGCCATGGTACAAAAACTGCAGCATGCAAAGAATGGACTTGATGTTGTCTCCCAAAGTCGGGTATTGATCAGCTTGACTGACCACTGCATCATTAACGATATACTATGTTTTT
TTCTTTTAAATTCCTTGCTAATATGTAATAGAATGTGACAGATAAGAACGCATTTTTCAAGACCCAACTGGAGAAAGGTATTTACTCAAATGGCAGAAACACATAAATTTTCTCGGATAG
GTAAGTGTGGAACTGTAAAGAACCTTTTTTGGTACCATGGCGCACCATATCTTTTTCAGCTATATCATTAGTTTTATGCTTAGGTCCTTTGTTTACTTCTTGATGTCTTGGTTTGCAGGC
GTCTTCTACTGTGGAAGTGCTCTCCTTGTCAAACCACTGAGGGAGCTTTGCCAAGAATTTACTCTAAATTCATCAACTCGTTTCCAATTTCATAAGGAGAACTTCTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGAAGCAAAACGGAATCAAAAAGGTGGATGCTTGAGAGCATTGAAATTGATAGGATGCGGGGTGTTCCTGTTAATGATGAACCTAAAGCCACCTTACCGCCCAAAGAACCTGCTGAT
GCATTCATCAAGAGGAGTGCAAGTAATCTTGGGGCATCCCTCAGAAGGACTACAAGTAGTGCCTTGAGGAAGAGTGGGGTTCTCTCTTCGAAACCTCCTCTCCCCAAGATAGAAAGAACA
GCATCATCAGCTTCTAGAGGACTTAAAAGCCTAAGGTTTCTTGATAGAACAATGACAGGAAAGGAAATGGATGCATGGAGATCCATCGAAAGGCGTTTTGATCAATTTGCAGTTCATGAA
AGGCTCCCTAAGGACAAATTTGGAATCTGCATTGGACTAGGAGATTCAAAAGAGTTTGCAGGAGAAATATTTCATGCAATTGCCAGGCGTAAGAATATATGCCCCGCAAATGGGATAACA
AAAGATGAGTTGAAATTGTTTTGGGAAGACATGACTAAACAAGATCTTGATTCTCGTCTTGGAATATTTTTTGATATGTGCGACAAGAATGGGGATGGGAGGCTTTCGGAGTTGGAAGTG
AGGGAGGTTATAGAGTTGAGTGCCTCTGCAAACAAGCTCACAAATCTTAAACAGCATGCGGCAGTCTATGCAGCTCTAATCATGGAAGAACTTGATCCTGATCATCTTGGATATATAGGG
CTATGGGAGCTTGAAACTCTGCTAAGAGGGATGGTGAATAATGAAGATCAAACGACGAAGCTCGATGAAAAAACGCATAATCTCACAAATGCCATGATCCCAAGAAGATATAGGACTCCT
GTTACCAAATTCTTGACTGTGTCAGTAGAATATATTCATGAGAACTGGAGGAGAATATGGGTTATCGCGTTGTGGTTAGCTGTAAACTTCGTACTCATTTTTTGGAAGTTTAAGGAGTTC
GAGAAATCACCGCTATTCAAAATCTCAAGTTATTGTGTCTGTCTTGCCAAGGCTTCTGCCGAGAGTCTCAAGTTTAATATGGCCCTCATTCTTCTTCCTGTCTGCAGAAGAACACTTACT
AAGCTTAGATCATCATTTCTCGGCACCTTTATCCCTTTCGATGACAACATAAGCTTTCACAAGACGATTGCTTTGGCCATAGTAATTGGGACTCTAGCTCATACTCTAGCACATGTGCTT
TGTAATATTCCGTTGTTGAGTTCATGCCCAGAAGGCAAATTCATGCTATTTGCTGGACCATTGTTCCATTACCAACAGCCAACTTATTGGTTCTTCATGCGAAGCATTGTAGGCGTAACC
GGAATTCTGATGATCCTTATAATGGGGTTCTCATTTACTTTGGCGACACACCATTTCCGAAAGAACGTCGTTAAGTTACCAGGGGTATTTCACAGATTGGCAGGGTTTAATGCCTTTTGG
TATGCGCATCATCTGCTCGCCCTAGCATATCTACTGTGCATTTTGCATGGCTACTTCTTAATATTTGAAAAGCCTTGGTATGCCAAAACGACATGGATGTATCTCATTGGCCCAGTATTG
TTCTATGCCACTGAGAGAGTCTTCACAAAAAATCAGGAACGCTTTCACCGTGTTGATGTCATTAAGGCAATTATATATACAGGGAATGTTCTTGCTCTATACATGGGCAAGCCTCCAGGA
TTTAAGTACGAAAGTGGAATGTACCTCTTTATCAAATGCCCGGATTTGTCCAAGTTTGAATGGCATCCCTTCTCCATCACTTCTGCACCAGGAGATAACAATTTGAGTGTCCACATAAGA
ACTGTGGGTGATTGGACTACAGAACTCAAAAACTTATTTGCGAAGGTCTGTGAGCCCCCCCGGGATACTAAACAAAACCAAGGAAGGCTAAAGAGAATGGAAACTAAAGCATTGTCAAAC
TCAAACTTCGATCAGATACAAGCAACATTTCCAAAGATCCTGATCAAAGGACCATTTGGAGCCCCCGCTCAGAATTACAAAAAGTTTGACATATTACTGCTCATAGGTCTAGGAATTGGA
GCAACTCCATTTATCAGCATTTTGAAGGATCTGCTCAATCAGATCAAATCAAATGCAGCGGAGTCGAGGAGGGACCAACGAATGGGTTCAACTGATAAAAAGGGTCCAGAAAGAGCATAC
TTTTACTGGGTCACAAGAGAACAAAGTTCTTTTGATTGGTTCAAGGGTGTCATGGACGATATTGCAGACTATGATGATAATAATATAATTGAAATGCACAACTACTTGACTAGTGTGTAT
GAAGAAGGAGATGCAAGGTCTGCACTTATTGCCATGGTACAAAAACTGCAGCATGCAAAGAATGGACTTGATGTTGTCTCCCAAAGTCGGATAAGAACGCATTTTTCAAGACCCAACTGG
AGAAAGGTATTTACTCAAATGGCAGAAACACATAAATTTTCTCGGATAGGCGTCTTCTACTGTGGAAGTGCTCTCCTTGTCAAACCACTGAGGGAGCTTTGCCAAGAATTTACTCTAAAT
TCATCAACTCGTTTCCAATTTCATAAGGAGAACTTCTAA

Retrieve as FASTA