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Entry information : PpaRboh03-2
Entry ID 6088
Creation 2008-01-30 (Christophe Dunand)
Last sequence changes 2008-01-30 (Christophe Dunand)
Sequence status complete
Reviewer Catherine Mathe
Last annotation changes 2012-04-19 (Catherine Mathe)
Peroxidase information: PpaRboh03-2
Name PpaRboh03-2
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh005]
Taxonomy Eukaryota Viridiplantae Streptophyta Funariaceae Physcomitrella
Organism Physcomitrella patens    [TaxId: 3218 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PpaRboh03-2
start..stop		 S start..stop
PpaRboh03-4 1297 0 14..827 3..800
PpaRboh03-3 1226 0 1..827 75..886
PpaRboh03-1 1180 0 45..827 1..775
MpalRboh02 1022 0 2..827 165..1023
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '6088' 'join(133215..133518,133645..133804,134008..134170,134290..134704,134821..135197,135313..135408,135516..135808,135935..136138,136229..136511,136638..136716,136837..136946)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 133215..133518 302 N° 2 133645..133804 158 N° 3 134008..134170 161 N° 4 134290..134704 413
N° 5 134821..135197 375 N° 6 135313..135408 94 N° 7 135516..135808 291 N° 8 135935..136138 202
N° 9 136229..136511 281 N° 10 136638..136716 77 N° 11 136837..136946 108  
join(133215..133518,133645..133804,134008..134170,134290..134704,134821..135197, 135313..135408,135516..135808,135935..136138,136229..136511,136638..136716,13683 7..136946)


exon

Literature and cross-references PpaRboh03-2
DNA ref. Phytozome 12:   scaffold_10 (133215..136946)
Protein sequence: PpaRboh03-2
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   827
PWM (Da):   %s   94809.78 Transmb domain:   %s   i264-283o395-417i436-458o473-487i625-642o
PI (pH):   %s   9.61
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MVKQLSNEFHRYPRSASRVQDLDNSVDERGVLDSELGNCGSTRKMQKSTSRAEYAIKAVRCISKATATADQKKSWQKVEERFHKLRDADSMLPRFYFPECIGMKESKEFALELFDALVRR
KGEKVNSISKDGLYQFWLEITDKSFDARMQMFFDLCDKDLDGRISGEEVKQVIMLSASANKLSKLKEQAAEYAALIMEELDVNRNGYILSHLETLLRESVLPGHGKEATMNNHQLLIKRS
KRSRIRSFAEKTRNCFQDNWKRLWILALWMMAMTGLFIWKFFQYREHAAFPIMGNCLCVAKGAAETLKLNMALVLLPVCRNTLTRLRSTRLGKIIPFDDNLDFHKETGGIAAGVFIHGVC
HITCDIPKFVESGDDKFFKYLGDEFEKHPTYANIAVMPVAITGILMVVFMIIAFLLATHWFRRSMVKLPWPLQRLTGFNAFWYSHHLFVIVYALLMVHSIKLLLAGPWYKRTWMYIAIPL
LLYAGERMLRLYRTNSSKVEIVKAAIYTGNVLAIHITKPQGFKYKSGMYLFLQCPQISSFEWHPFSITSAPGDPFLSVHIRTLGDWTAEMKKIFSEACGGRTCLQTINNYGLSGELTLAARFPKLFVDGPYGAPAQDYLKYDVLLLVGLGIGATPFISILKDMLHHTRYDLSDPVMKPCDRESCRLRAPLTPSLRPTESPKKKKKSKRKPKAYFYWVTREQGSFDWFRGIMREVEEIDNK
ESIEMHNYLTSVYEEGDARSTLVTMLQSLYHAKNGVDLVSGTARTHFARPNWKDVFANLTFTHPEKRIGVFYCGPAALVNELETLSRTYTKESSTKFSFHKENF

Retrieve as FASTA  
Remarks Complete sequence from genomic (10 introns). No EST. Incorrect prediction from Phytozome (5' is missing and splicing error)
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGTGAAACAGTTGAGCAATGAGTTCCATCGATATCCACGAAGTGCTTCCAGGGTTCAAGATTTGGACAACTCCGTGGACGAGCGGGGAGTTCTGGATTCCGAGCTCGGAAACTGTGGC
TCAACCAGGAAAATGCAAAAAAGTACTTCGCGCGCGGAATATGCAATCAAAGCTGTGCGGTGTATCAGCAAGGCCACTGCTACCGCAGACCAAAAGAAGTCGTGGCAGAAAGTAGAAGAA
CGGTTTCACAAGCTTCGTGACGCTGATTCTATGTTGCCTCGTTTCTATTTTCCCGAATGCATCGCGGTGCGTTGAATGATCCGTTGCATTTCTCTCTTGTTACGAAGGACTTCAATTCAA
CCAGGAACAACGGTAATGGAATGCTTTGTGTGGACATAATAAACAAGGATTGTTGCTTTGTTGTGTTCGTAGGAATGAAGGAATCCAAGGAATTTGCTCTGGAGCTCTTTGATGCGTTGG
TGCGTCGTAAAGGCGAGAAGGTGAATAGCATCAGCAAAGATGGCTTATACCAGTTTTGGTTGGAAATCACAGATAAAAGCTTCGACGCCAGGATGCAGATGTTCTTTGACCTCTGTAAAC
TGCCCCGACCGTTTCATGAATCTTCCCCCTAGAAAGTTCATCTAAGTCCACCCTCTTTCCGTATTTCCTGTTTCCAGAGTTGAGTGTTAGGATTGATTTGAGGATGAAGAGGTGCTTTGG
CTCAGCGTGTTCCTATTGATCATATTAGAATCTGATTTGAGTAAGCTGAATGGAAGAATTCTCGGATCCTTCGACAGGTGTGACAAGGATTTGGACGGTCGAATTTCAGGCGAGGAAGTG
AAGCAAGTGATCATGTTGAGTGCAAGTGCGAACAAGTTGTCAAAACTGAAGGAGCAGGCGGCAGAGTATGCAGCCCTTATTATGGAAGAACTTGATGTGAATCGTAATGGTTACATAGAG
AGGTAACACTTGAAGTCTTCCGCAATCACCCCCATCTGTACTCGAATTTTTAGATTCTCAACAGTAGATGTATTACATCTTTTGTAAAAGTTACAGATTAAATTGACTTTGATGTACGCA
GTTGAGTCATTTAGAGACATTGTTGCGCGAATCGGTGTTGCCGGGGCATGGAAAAGAGGCAACAATGAACAACCACCAATTGTTGATAAAGAGGAGCAAGCGATCCAGGATTCGCAGCTT
CGCTGAGAAGACGAGGAACTGCTTTCAGGATAATTGGAAACGGTTGTGGATATTGGCTCTGTGGATGATGGCCATGACAGGACTTTTCATTTGGAAGTTTTTTCAGTATCGGGAGCACGC
TGCGTTTCCAATCATGGGCAACTGTCTTTGCGTCGCCAAGGGCGCAGCTGAGACTTTGAAGCTGAACATGGCGCTCGTTCTCCTGCCCGTTTGCCGCAACACGCTCACACGGTTGAGGTC
CACGCGATTAGGAAAGATCATTCCTTTCGACGACAATCTCGACTTTCACAAGGAAAAAGTCTCTCCTGAATCAGAGTGATTAAGCTGGAATCGATCGCTAGGTGGTGAAGCCGTGAGAGA
AATTTGTTGAGGCATCTGACAGGGATTGCAAAAGTGGTTTTACGCAGATCATAGCCGGAGGTATAGCAGCCGGGGTGTTCATTCATGGTGTTTGTCACATAACCTGCGACATTCCCAAAT
TCGTCGAAAGTGGCGATGATAAATTCTTCAAGTACCTCGGCGACGAATTCGAAAAGCACCCAACCTACGCTAACATTGCAGTGATGCCAGTGGCGATCACGGGTATTCTCATGGTGGTTT
TCATGATAATTGCCTTCTTACTAGCCACTCACTGGTTCCGTCGCAGCATGGTGAAGCTTCCGTGGCCATTGCAGCGTCTGACGGGATTCAATGCATTCTGGTATTCACATCACCTGTTCG
TGATTGTATACGCACTCCTCATGGTCCACTCCATCAAGCTACTTCTTGCTGGTCCATGGTACAAGCGAACGCGGTATGGGTTCTTCTTACGCCAATCCAAACCGATGTCGCTCAAATTGC
ATATGGAGTTCAAAACTTGCGAATGTGTCAACGTTCGTGTCTGAGCTTCGAGGTGTGTGTGGGTGCAGACATGGATGTACATCGCTATCCCCTTACTTTTATACGCAGGCGAACGGATGC
TGCGATTGTACCGCACCAACTCCAGCAAAGTGGAGATCGTGAAGAGGTGGGGATTCATCTTCCACTGTGTTCTGTGCAAGTGGATCTAATGACTTGGCAATTTCTGATACTTCCATTCAG
AAGTAGAATTGACATCGCTCCTGGTCGAAGCAGGCTGCAATTTACACCGGTAACGTCCTTGCTATCCACATCACAAAACCCCAGGGCTTCAAGTACAAGAGCGGCATGTACCTCTTCTTG
CAGTGCCCCCAAATCTCCTCTTTTGAATGGCACCCATTCTCCATAACGTCTGCCCCCGGTGACCCTTTCCTCAGTGTTCACATCCGCACACTGGGTGACTGGACTGCGGAGATGAAGAAA
ATCTTCTCTGAGGCTTGCGGTGGACGAACGTGCCTTCAAACTATCAACAATTATGGCCTCAGTGGTGAGCTGACTCTAGCTGCAAGAGGTACTAAATGATCACCACGGTATTGGACTTCA
CCAAAAAGACCTTAGAATGCTTTGGTATGACTCAATAATAGAGCGTAGTATACTTTCAAGCGCTTGTCTCACCAATTGTTGTGTGTGTCTGCAGATTCCCAAAGTTGTTCGTCGATGGTC
CGTATGGAGCTCCCGCTCAAGACTACCTGAAATATGATGTGCTGCTCCTGGTTGGACTCGGAATTGGAGCAACGCCATTTATTAGTATCCTCAAGGACATGCTTCATCACACCAGATATG
ACCTTTCTGATCCGGTAATGAAACCATGTGATCGTGAATCATGTCGTTTGAGAGCTCCCCGTTTGCTTCCCCTAGCATTTTGCTTCGAGTAATGGTTCCTTATAACACTGCTTTATTTAT
ATTCAAATCATTCATTTTCTGTTTGCAGAGCTTAACACCAAGTTTACGCCCAACCGAAAGTCCAAAGAAAAAGAAGAAAAGCAAGAGGAAACCGAAAGCTTACTTCTACTGGGTCACACG
AGAGCAAGGCTCCTTCGACTGGTTCAGAGGAATCATGCGAGAAGTCGAAGAGATCGATAACAAGGAGTCCATTGAGATGCACAATTATTTGACTAGTGTGTATGAGGAAGGTGATGCTCG
CTCGACGTTGGTCACGATGTTACAGTCGTTGTATCACGCCAAGAACGGAGTCGACCTCGTTTCCGGGACTCGAGAGTATGTGTCATTCAACACCAGCTTCCATCTTTCTCCGAAAGTTTC
TGTTCAGTTCCATGATGTACCCATCTCTTTCCGCAACGTCAACTCACTGAACTAACATGTTTTCTTCCTTAATCCTCGCAGGCACGGACACATTTTGCTAGGCCCAACTGGAAGGATGTC
TTTGCAAATCTAACTTTCACTCACCCTGAAAAGCGAATCGCGGTAAGAAATGATCTGAAGCAAACTTGAATTTTCTGAATCAACGTTTTGGTTAGTTTATGGGTCGGAGTCATTCATTTA
AGGGTTGCTAAGCTAAAAATTTCCATCGTGCAAGTTTCGCAGGGGTTTTCTACTGTGGCCCTGCAGCACTAGTAAACGAGCTTGAGACTCTATCTCGAACCTACACAAAGGAGTCGTCCA
CAAAATTTTCCTTCCACAAAGAGAATTTCTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGTGAAACAGTTGAGCAATGAGTTCCATCGATATCCACGAAGTGCTTCCAGGGTTCAAGATTTGGACAACTCCGTGGACGAGCGGGGAGTTCTGGATTCCGAGCTCGGAAACTGTGGC
TCAACCAGGAAAATGCAAAAAAGTACTTCGCGCGCGGAATATGCAATCAAAGCTGTGCGGTGTATCAGCAAGGCCACTGCTACCGCAGACCAAAAGAAGTCGTGGCAGAAAGTAGAAGAA
CGGTTTCACAAGCTTCGTGACGCTGATTCTATGTTGCCTCGTTTCTATTTTCCCGAATGCATCGGAATGAAGGAATCCAAGGAATTTGCTCTGGAGCTCTTTGATGCGTTGGTGCGTCGT
AAAGGCGAGAAGGTGAATAGCATCAGCAAAGATGGCTTATACCAGTTTTGGTTGGAAATCACAGATAAAAGCTTCGACGCCAGGATGCAGATGTTCTTTGACCTGTGTGACAAGGATTTG
GACGGTCGAATTTCAGGCGAGGAAGTGAAGCAAGTGATCATGTTGAGTGCAAGTGCGAACAAGTTGTCAAAACTGAAGGAGCAGGCGGCAGAGTATGCAGCCCTTATTATGGAAGAACTT
GATGTGAATCGTAATGGTTACATAGAGTTGAGTCATTTAGAGACATTGTTGCGCGAATCGGTGTTGCCGGGGCATGGAAAAGAGGCAACAATGAACAACCACCAATTGTTGATAAAGAGG
AGCAAGCGATCCAGGATTCGCAGCTTCGCTGAGAAGACGAGGAACTGCTTTCAGGATAATTGGAAACGGTTGTGGATATTGGCTCTGTGGATGATGGCCATGACAGGACTTTTCATTTGG
AAGTTTTTTCAGTATCGGGAGCACGCTGCGTTTCCAATCATGGGCAACTGTCTTTGCGTCGCCAAGGGCGCAGCTGAGACTTTGAAGCTGAACATGGCGCTCGTTCTCCTGCCCGTTTGC
CGCAACACGCTCACACGGTTGAGGTCCACGCGATTAGGAAAGATCATTCCTTTCGACGACAATCTCGACTTTCACAAGGAAACCGGAGGTATAGCAGCCGGGGTGTTCATTCATGGTGTT
TGTCACATAACCTGCGACATTCCCAAATTCGTCGAAAGTGGCGATGATAAATTCTTCAAGTACCTCGGCGACGAATTCGAAAAGCACCCAACCTACGCTAACATTGCAGTGATGCCAGTG
GCGATCACGGGTATTCTCATGGTGGTTTTCATGATAATTGCCTTCTTACTAGCCACTCACTGGTTCCGTCGCAGCATGGTGAAGCTTCCGTGGCCATTGCAGCGTCTGACGGGATTCAAT
GCATTCTGGTATTCACATCACCTGTTCGTGATTGTATACGCACTCCTCATGGTCCACTCCATCAAGCTACTTCTTGCTGGTCCATGGTACAAGCGAACGACATGGATGTACATCGCTATC
CCCTTACTTTTATACGCAGGCGAACGGATGCTGCGATTGTACCGCACCAACTCCAGCAAAGTGGAGATCGTGAAGGCTGCAATTTACACCGGTAACGTCCTTGCTATCCACATCACAAAA
CCCCAGGGCTTCAAGTACAAGAGCGGCATGTACCTCTTCTTGCAGTGCCCCCAAATCTCCTCTTTTGAATGGCACCCATTCTCCATAACGTCTGCCCCCGGTGACCCTTTCCTCAGTGTT
CACATCCGCACACTGGGTGACTGGACTGCGGAGATGAAGAAAATCTTCTCTGAGGCTTGCGGTGGACGAACGTGCCTTCAAACTATCAACAATTATGGCCTCAGTGGTGAGCTGACTCTA
GCTGCAAGATTCCCAAAGTTGTTCGTCGATGGTCCGTATGGAGCTCCCGCTCAAGACTACCTGAAATATGATGTGCTGCTCCTGGTTGGACTCGGAATTGGAGCAACGCCATTTATTAGT
ATCCTCAAGGACATGCTTCATCACACCAGATATGACCTTTCTGATCCGGTAATGAAACCATGTGATCGTGAATCATGTCGTTTGAGAGCTCCCTTAACACCAAGTTTACGCCCAACCGAA
AGTCCAAAGAAAAAGAAGAAAAGCAAGAGGAAACCGAAAGCTTACTTCTACTGGGTCACACGAGAGCAAGGCTCCTTCGACTGGTTCAGAGGAATCATGCGAGAAGTCGAAGAGATCGAT
AACAAGGAGTCCATTGAGATGCACAATTATTTGACTAGTGTGTATGAGGAAGGTGATGCTCGCTCGACGTTGGTCACGATGTTACAGTCGTTGTATCACGCCAAGAACGGAGTCGACCTC
GTTTCCGGGACTCGAGCACGGACACATTTTGCTAGGCCCAACTGGAAGGATGTCTTTGCAAATCTAACTTTCACTCACCCTGAAAAGCGAATCGGGGTTTTCTACTGTGGCCCTGCAGCA
CTAGTAAACGAGCTTGAGACTCTATCTCGAACCTACACAAAGGAGTCGTCCACAAAATTTTCCTTCCACAAAGAGAATTTCTGA

Retrieve as FASTA