View Redoxidase 6091

Entry information : SmRboh03-1_13 (SmRboh03a_13)

Entry ID	6091
Creation	2008-02-08 (Christophe Dunand)
Last sequence changes	2010-06-01 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2011-01-25 (Toky Ramarohetra (Scipio))

Peroxidase information: SmRboh03-1_13 (SmRboh03a_13)

Name (synonym)

SmRboh03-1_13 (SmRboh03a_13)

Class

Respiratory burst oxidase homolog [Orthogroup: Rboh005]

Taxonomy

Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella

Organism

Selaginella moellendorffii [TaxId: 88036 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SmRboh03-1_13 start..stop	S start..stop
SmRboh03-2_66	1400	0	1..693	87..796
SmRboh04-2_88	971	0	4..693	81..789
SmRboh04-1_39	970	0	4..693	81..788
SmRboh02-2_137	970	0	1..693	184..902

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '6091' 'join(2053722..2053882,2053930..2053978,2054054..2054167,2054216..2054623,2054685..2055071,2055120..2055215,2055265..2055380,2055446..2055548,2055668..2055855,2055941..2056082,2056197..2056325,2056388..2056466,2056525..2056634)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	2053722..2053882	159	N° 2	2053930..2053978	47	N° 3	2054054..2054167	112	N° 4	2054216..2054623	406
N° 5	2054685..2055071	385	N° 6	2055120..2055215	94	N° 7	2055265..2055380	114	N° 8	2055446..2055548	101
N° 9	2055668..2055855	186	N° 10	2055941..2056082	140	N° 11	2056197..2056325	127	N° 12	2056388..2056466	77
N° 13	2056525..2056634	108
join(2053722..2053882,2053930..2053978,2054054..2054167,2054216..2054623,2054685 ..2055071,2055120..2055215,2055265..2055380,2055446..2055548,2055668..2055855,20 55941..2056082,2056197..2056325,2056388..2056466,2056525..2056634)

Literature and cross-references SmRboh03-1_13 (SmRboh03a_13)

DNA ref.	Phytozome 12: scaffold_13 (2053722..2056634)

Protein sequence: SmRboh03-1_13 (SmRboh03a_13)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	693 (305)
PWM (Da):	79440.13 (33254.9)	Transmb domain:	o159-181i208-230o245-264i292-314o343-365i511-528o
PI (pH):	9.53 (8.91)	Peptide Signal:	cut: 27 range:27-331

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MSDSKEFAELLFDALARRKGHDELWTASKEELRDFWLQITDKRFS
SRLQTFFDLCDTDLDGRISENEVKIILLSASANKLSFLQEQAEEYAALIMGELDQNKQGYIEVKQLERLMREPIALAEDPSYGYACAPTLHSRRRNRLHLLQRTIKYFALDNWQRIWVLCVWFLAMTG
LFTWKFIEYKNRAAFKIMGYCVCTAKGAAETLKLNMALVLLPVCRITITSLRSTVFGSILPFNDNINFHKLIAAAILFGVLLHGGTHIACDFPKMANANSRIFLDTIGHGFHGRQPSFLG
ILASIEGITGIIMVVLMSIAFLLATHWSRKNIVRLPWPLHRLTGFNAFWYSHHLFILVYALLIIHSVFLFLTPDWQQKTTWIYLSCPLLLYVGERFLRVLRSRQHRVNIVKAAIHPGNVL
ALDMTKPPGFKYRSGMYMFLQCPAISPFEWHPFSITSAPDDEFLNVHIRTVGDWTKEMRKIFASAAGWLTSPDRFPKLYIDGPYGAPAQDYRKYDVMLLVGLGIGATPFISILKDMLNNI
KSTEQHKPFDSPRRKSRKSRGPTNAYFYWVTREQGSFEWFKGVMNEVAEIDHAVIEMHNYLTSVYEEGDARSALIAMVQALHHTKNGVDIVSGTRARTHFARPNWDKVFARLTATHDNSR
IGVFYCGPSQVAKELDVLSRKYSQESNTKFIFHKENF

Retrieve as FASTA

Remarks

Complete sequence from genomic (12 introns). No EST.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGAGCGATTCCAAGGAATTTGCGGAGTTGCTGTTTGATGCTCTAGCCCGGCGGAAAGGCCATGACGAGCTGTGGACCGCTTCGAAGGAAGAACTCCGGGACTTTTGGCTTCAAATCACG
GACAAGAGATTTAGCTCTCGATTGCAAACATTTTTTGACTTTTGTAAGTTGTCCAGTCTTTTCTTTGATTGTTCTAAATTTTATCCATAGGTGTGACACGGATCTGGACGGTCGCATATC
AGAAAACGAAGTGAAAGAGAGGTACATATGGAGTTGATTTTACTCCCTCTGCTTTTGTTTGAGCGCTAAACTAAAGGAACAAGCCCCGGATTGCAGATAATTCTACTCAGTGCGTCGGCG
AACAAGCTCTCGTTTCTGCAAGAGCAAGCTGAAGAATACGCAGCTCTCATCATGGGAGAACTCGATCAGAATAAACAAGGATATATTGAGAGGTAAGAAGCTTCCTACCACGCAACCTTT
CAACGTTCAACTTATTTCAGGTGAAACAACTTGAACGGTTGATGCGAGAGCCGATCGCACTCGCTGAGGATCCGTCCTATGGGTACGCGTGTGCTCCAACTTTACACTCTCGAAGAAGAA
ACCGATTGCATTTACTCCAGAGAACGATCAAGTACTTCGCTCTGGACAACTGGCAGCGGATATGGGTGCTGTGCGTGTGGTTTCTCGCCATGACCGGTCTTTTCACCTGGAAGTTCATAG
AGTACAAGAACAGAGCCGCTTTTAAGATCATGGGATACTGTGTGTGCACGGCCAAAGGCGCTGCGGAGACTTTGAAACTCAACATGGCATTGGTCCTGCTGCCAGTTTGCAGGATCACAA
TCACGTCCTTACGCTCCACTGTTTTCGGATCCATACTACCTTTCAACGACAACATCAACTTTCACAAGAGGTATGACTTCGTTTGTTCCTGTGTTTGTACGCATGCTTTCTTACGATGGC
CTGTTTTCCAGCTTATTGCTGCAGCGATTTTGTTCGGCGTTTTGCTTCACGGAGGAACTCATATTGCTTGTGACTTCCCCAAGATGGCCAACGCAAACAGTCGTATATTTCTTGATACTA
TTGGGCATGGTTTCCACGGCCGGCAACCATCTTTCCTTGGCATATTGGCTTCGATTGAGGGGATTACGGGGATTATTATGGTGGTCCTGATGTCGATAGCTTTCCTTCTTGCAACGCACT
GGTCCCGCAAGAACATCGTCAGGCTCCCTTGGCCCCTCCACAGGTTAACAGGATTCAACGCATTTTGGTACTCGCATCATCTTTTTATTTTGGTCTACGCCCTGCTGATCATACACTCGG
TGTTTCTCTTCCTGACCCCAGACTGGCAGCAAAAGACGCGGTACCTACATTATGATCTGATTGACTTCTGATATTTTTTGTACTGCAGACGTGGATATATCTATCCTGTCCATTGCTGCT
GTACGTTGGCGAGAGGTTCCTGCGCGTTTTAAGATCGAGGCAGCATCGAGTCAACATAGTAAAGAGGTAACTTTCCGCAGCAAATTGTCTCTCACGCTGAAACTTTGTTTCACAGGCAGC
AATTCATCCTGGCAACGTTCTTGCCTTGGACATGACAAAACCTCCAGGCTTCAAGTATCGGAGTGGCATGTACATGTTTCTGCAGTGTCCAGCGATCTCGCCATTCGAGTGTGGTAAAAA
TCTTGGTGACCCTAGCAAGCAGATTGAAACACTTTTTCTTCTTCTTTTGTGTGGCCAGGCATCCCTTCTCGATCACGTCTGCGCCCGACGACGAGTTTTTAAATGTGCACATACGGACGG
TGGGGGACTGGACCAAGGAAATGAGGAAAATCTTTGCCAAGAGGTTTGTTTGCTTCCCCTTCAATGCCTGTCCTGATCCACAGTTGTGCGTAGGCAGTTGACACTAGCTCTTCCATCGAC
GATTCACGGTCAGTGATCCCAACAACCAAACGTTTCCGTTAGTCCGCGGCTGGCTGGCTTACATCCCCTGACAGGTTTCCAAAGCTCTACATTGATGGACCTTATGGCGCTCCTGCTCAG
GACTACCGAAAGTATGACGTGATGCTCCTCGTTGGCTTGGGAATCGGAGCTACACCTTTTATCAGCATCTTAAAGGACATGCTCAACAACATCAAATCCACGGAGCAACACAGTCGGTAA
GCTTCTCTCTTTTGTTTTCTTGTTCTTTTCTTAGCACAAGTTGTGTTGCTTGCTTGCTCGCAGGACATAGACTTTAGCAAGCCGTTTGATAGCCCGAGAAGAAAGAGCCGCAAGTCTCGT
GGCCCAACAAACGCCTACTTCTACTGGGTCACCAGAGAGCAAGGCTCGTTCGAGTGGTTCAAAGGCGTCATGAATGAGGTGGCCGAAATAGATCACAAGAGGTCAGCCACTCGTCACCAA
TCTTAAGTCAGCCCCGCAACCACGATAGAAGCTCTTGGTTGATTGACTCAAAAGAAAAGATTTATTGCTGACGTATAAAGGTTTTGCTTCCGCAGGCAGTAATTGAGATGCACAACTACC
TCACAAGCGTGTACGAGGAAGGTGACGCGCGCTCGGCTCTCATTGCAATGGTACAAGCTCTACACCACACCAAAAACGGCGTGGATATCGTCTCGGGCACCCGGGGGTAAAAAACTTTCA
TCCCCAGAGCTTTCGCTAAGATCTTCTTTTCTTCTTCTTTGTGCCCAGGCACGCACTCACTTCGCAAGGCCAAACTGGGACAAGGTGTTCGCACGTCTCACTGCCACACACGACAATTCA
AGGATAGAGGTAAGAAGAAGAGAAGAAAATGATGAGAGCAAACTCCACTTACTTTGGTTGTTGTTAGGAGTGTTCTACTGCGGGCCTTCGCAAGTCGCCAAAGAGTTAGATGTGCTGTCC
CGGAAATATTCCCAAGAGTCCAACACCAAATTTATATTCCACAAGGAGAACTTTTAG

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGAGCGATTCCAAGGAATTTGCGGAGTTGCTGTTTGATGCTCTAGCCCGGCGGAAAGGCCATGACGAGCTGTGGACCGCTTCGAAGGAAGAACTCCGGGACTTTTGGCTTCAAATCACG
GACAAGAGATTTAGCTCTCGATTGCAAACATTTTTTGACTTGTGTGACACGGATCTGGACGGTCGCATATCAGAAAACGAAGTGAAAGAGATAATTCTACTCAGTGCGTCGGCGAACAAG
CTCTCGTTTCTGCAAGAGCAAGCTGAAGAATACGCAGCTCTCATCATGGGAGAACTCGATCAGAATAAACAAGGATATATTGAGGTGAAACAACTTGAACGGTTGATGCGAGAGCCGATC
GCACTCGCTGAGGATCCGTCCTATGGGTACGCGTGTGCTCCAACTTTACACTCTCGAAGAAGAAACCGATTGCATTTACTCCAGAGAACGATCAAGTACTTCGCTCTGGACAACTGGCAG
CGGATATGGGTGCTGTGCGTGTGGTTTCTCGCCATGACCGGTCTTTTCACCTGGAAGTTCATAGAGTACAAGAACAGAGCCGCTTTTAAGATCATGGGATACTGTGTGTGCACGGCCAAA
GGCGCTGCGGAGACTTTGAAACTCAACATGGCATTGGTCCTGCTGCCAGTTTGCAGGATCACAATCACGTCCTTACGCTCCACTGTTTTCGGATCCATACTACCTTTCAACGACAACATC
AACTTTCACAAGCTTATTGCTGCAGCGATTTTGTTCGGCGTTTTGCTTCACGGAGGAACTCATATTGCTTGTGACTTCCCCAAGATGGCCAACGCAAACAGTCGTATATTTCTTGATACT
ATTGGGCATGGTTTCCACGGCCGGCAACCATCTTTCCTTGGCATATTGGCTTCGATTGAGGGGATTACGGGGATTATTATGGTGGTCCTGATGTCGATAGCTTTCCTTCTTGCAACGCAC
TGGTCCCGCAAGAACATCGTCAGGCTCCCTTGGCCCCTCCACAGGTTAACAGGATTCAACGCATTTTGGTACTCGCATCATCTTTTTATTTTGGTCTACGCCCTGCTGATCATACACTCG
GTGTTTCTCTTCCTGACCCCAGACTGGCAGCAAAAGACGACGTGGATATATCTATCCTGTCCATTGCTGCTGTACGTTGGCGAGAGGTTCCTGCGCGTTTTAAGATCGAGGCAGCATCGA
GTCAACATAGTAAAGGCAGCAATTCATCCTGGCAACGTTCTTGCCTTGGACATGACAAAACCTCCAGGCTTCAAGTATCGGAGTGGCATGTACATGTTTCTGCAGTGTCCAGCGATCTCG
CCATTCGAGTGGCATCCCTTCTCGATCACGTCTGCGCCCGACGACGAGTTTTTAAATGTGCACATACGGACGGTGGGGGACTGGACCAAGGAAATGAGGAAAATCTTTGCCAAGTCCGCG
GCTGGCTGGCTTACATCCCCTGACAGGTTTCCAAAGCTCTACATTGATGGACCTTATGGCGCTCCTGCTCAGGACTACCGAAAGTATGACGTGATGCTCCTCGTTGGCTTGGGAATCGGA
GCTACACCTTTTATCAGCATCTTAAAGGACATGCTCAACAACATCAAATCCACGGAGCAACACAAGCCGTTTGATAGCCCGAGAAGAAAGAGCCGCAAGTCTCGTGGCCCAACAAACGCC
TACTTCTACTGGGTCACCAGAGAGCAAGGCTCGTTCGAGTGGTTCAAAGGCGTCATGAATGAGGTGGCCGAAATAGATCACAAGGCAGTAATTGAGATGCACAACTACCTCACAAGCGTG
TACGAGGAAGGTGACGCGCGCTCGGCTCTCATTGCAATGGTACAAGCTCTACACCACACCAAAAACGGCGTGGATATCGTCTCGGGCACCCGGGCACGCACTCACTTCGCAAGGCCAAAC
TGGGACAAGGTGTTCGCACGTCTCACTGCCACACACGACAATTCAAGGATAGGAGTGTTCTACTGCGGGCCTTCGCAAGTCGCCAAAGAGTTAGATGTGCTGTCCCGGAAATATTCCCAA
GAGTCCAACACCAAATTTATATTCCACAAGGAGAACTTTTAG

Retrieve as FASTA

cDNA►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGAGCGATT CCAAGGAATT TGCGGAGTTG CTGTTTGATG CTCTAGCCCG GCGGAAAGGC CATGACGAGC TGTGGACCGC TTCGAAGGAA GAACTCCGGG ACTTTTGGCT TCAAATCACG GACAAGAGAT TTAGCTCTCG ATTGCAAACA TTTTTTGACT TGTGTGACAC GGATCTGGAC GGTCGCATAT CAGAAAACGA AGTGAAAGAG ATAATTCTAC TCAGTGCGTC GGCGAACAAG CTCTCGTTTC TGCAAGAGCA AGCTGAAGAA TACGCAGCTC TCATCATGGG AGAACTCGAT CAGAATAAAC AAGGATATAT TGAGGTGAAA CAACTTGAAC GGTTGATGCG AGAGCCGATC GCACTCGCTG AGGATCCGTC CTATGGGTAC GCGTGTGCTC CAACTTTACA CTCTCGAAGA AGAAACCGAT TGCATTTACT CCAGAGAACG ATCAAGTACT TCGCTCTGGA CAACTGGCAG CGGATATGGG TGCTGTGCGT GTGGTTTCTC GCCATGACCG GTCTTTTCAC CTGGAAGTTC ATAGAGTACA AGAACAGAGC CGCTTTTAAG ATCATGGGAT ACTGTGTGTG CACGGCCAAA GGCGCTGCGG AGACTTTGAA ACTCAACATG GCATTGGTCC TGCTGCCAGT TTGCAGGATC ACAATCACGT CCTTACGCTC CACTGTTTTC GGATCCATAC TACCTTTCAA CGACAACATC AACTTTCACA AGCTTATTGC TGCAGCGATT TTGTTCGGCG TTTTGCTTCA CGGAGGAACT CATATTGCTT GTGACTTCCC CAAGATGGCC AACGCAAACA GTCGTATATT TCTTGATACT ATTGGGCATG GTTTCCACGG CCGGCAACCA TCTTTCCTTG GCATATTGGC TTCGATTGAG GGGATTACGG GGATTATTAT GGTGGTCCTG ATGTCGATAG CTTTCCTTCT TGCAACGCAC TGGTCCCGCA AGAACATCGT CAGGCTCCCT TGGCCCCTCC ACAGGTTAAC AGGATTCAAC GCATTTTGGT ACTCGCATCA TCTTTTTATT TTGGTCTACG CCCTGCTGAT CATACACTCG GTGTTTCTCT TCCTGACCCC AGACTGGCAG CAAAAGACGA CGTGGATATA TCTATCCTGT CCATTGCTGC TGTACGTTGG CGAGAGGTTC CTGCGCGTTT TAAGATCGAG GCAGCATCGA GTCAACATAG TAAAGGCAGC AATTCATCCT GGCAACGTTC TTGCCTTGGA CATGACAAAA CCTCCAGGCT TCAAGTATCG GAGTGGCATG TACATGTTTC TGCAGTGTCC AGCGATCTCG CCATTCGAGT GGCATCCCTT CTCGATCACG TCTGCGCCCG ACGACGAGTT TTTAAATGTG CACATACGGA CGGTGGGGGA CTGGACCAAG GAAATGAGGA AAATCTTTGC CAAGTCCGCG GCTGGCTGGC TTACATCCCC TGACAGGTTT CCAAAGCTCT ACATTGATGG ACCTTATGGC GCTCCTGCTC AGGACTACCG AAAGTATGAC GTGATGCTCC TCGTTGGCTT GGGAATCGGA GCTACACCTT TTATCAGCAT CTTAAAGGAC ATGCTCAACA ACATCAAATC CACGGAGCAA CACAAGCCGT TTGATAGCCC GAGAAGAAAG AGCCGCAAGT CTCGTGGCCC AACAAACGCC TACTTCTACT GGGTCACCAG AGAGCAAGGC TCGTTCGAGT GGTTCAAAGG CGTCATGAAT GAGGTGGCCG AAATAGATCA CAAGGCAGTA ATTGAGATGC ACAACTACCT CACAAGCGTG TACGAGGAAG GTGACGCGCG CTCGGCTCTC ATTGCAATGG TACAAGCTCT ACACCACACC AAAAACGGCG TGGATATCGT CTCGGGCACC CGGGCACGCA CTCACTTCGC AAGGCCAAAC TGGGACAAGG TGTTCGCACG TCTCACTGCC ACACACGACA ATTCAAGGAT AGGAGTGTTC TACTGCGGGC CTTCGCAAGT CGCCAAAGAG TTAGATGTGC TGTCCCGGAA ATATTCCCAA
GAGTCCAACA CCAAATTTAT ATTCCACAAG GAGAACTTTT AG

Retrieve as FASTA