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Entry information : SmRboh03-1_13 (SmRboh03a_13)
Entry ID 6091
Creation 2008-02-08 (Christophe Dunand)
Last sequence changes 2010-06-01 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: SmRboh03-1_13 (SmRboh03a_13)
Name (synonym) SmRboh03-1_13 (SmRboh03a_13)
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh005]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmRboh03-1_13
start..stop		 S start..stop
SmRboh03-2_66 1400 0 1..693 87..796
SmRboh04-2_88 971 0 4..693 81..789
SmRboh04-1_39 970 0 4..693 81..788
SmRboh02-2_137 970 0 1..693 184..902
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 2053722..2053882 159 N° 2 2053930..2053978 47 N° 3 2054054..2054167 112 N° 4 2054216..2054623 406
N° 5 2054685..2055071 385 N° 6 2055120..2055215 94 N° 7 2055265..2055380 114 N° 8 2055446..2055548 101
N° 9 2055668..2055855 186 N° 10 2055941..2056082 140 N° 11 2056197..2056325 127 N° 12 2056388..2056466 77
N° 13 2056525..2056634 108  
join(2053722..2053882,2053930..2053978,2054054..2054167,2054216..2054623,2054685 ..2055071,2055120..2055215,2055265..2055380,2055446..2055548,2055668..2055855,20 55941..2056082,2056197..2056325,2056388..2056466,2056525..2056634)


exon

Literature and cross-references SmRboh03-1_13 (SmRboh03a_13)
DNA ref. Phytozome 12:   scaffold_13 (2053722..2056634)
Protein sequence: SmRboh03-1_13 (SmRboh03a_13)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   693 (305)
PWM (Da):   %s   79440.13 (33254.9) Transmb domain:   %s   o159-181i208-230o245-264i292-314o343-365i511-528o
PI (pH):   %s   9.53 (8.91) Peptide Signal:   %s   cut: 27 range:27-331
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MSDSKEFAELLFDALARRKGHDELWTASKEELRDFWLQITDKRFS
SRLQTFFDLCDTDLDGRISENEVKIILLSASANKLSFLQEQAEEYAALIMGELDQNKQGYIEVKQLERLMREPIALAEDPSYGYACAPTLHSRRRNRLHLLQRTIKYFALDNWQRIWVLCVWFLAMTG
LFTWKFIEYKNRAAFKIMGYCVCTAKGAAETLKLNMALVLLPVCRITITSLRSTVFGSILPFNDNINFHKLIAAAILFGVLLHGGTHIACDFPKMANANSRIFLDTIGHGFHGRQPSFLG
ILASIEGITGIIMVVLMSIAFLLATHWSRKNIVRLPWPLHRLTGFNAFWYSHHLFILVYALLIIHSVFLFLTPDWQQKTTWIYLSCPLLLYVGERFLRVLRSRQHRVNIVKAAIHPGNVL
ALDMTKPPGFKYRSGMYMFLQCPAISPFEWHPFSITSAPDDEFLNVHIRTVGDWTKEMRKIFASAAGWLTSPDRFPKLYIDGPYGAPAQDYRKYDVMLLVGLGIGATPFISILKDMLNNI
KSTEQHKPFDSPRRKSRKSRGPTNAYFYWVTREQGSFEWFKGVMNEVAEIDHAVIEMHNYLTSVYEEGDARSALIAMVQALHHTKNGVDIVSGTRARTHFARPNWDKVFARLTATHDNSR
IGVFYCGPSQVAKELDVLSRKYSQESNTKFIFHKENF

Retrieve as FASTA  
Remarks Complete sequence from genomic (12 introns). No EST.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAGCGATTCCAAGGAATTTGCGGAGTTGCTGTTTGATGCTCTAGCCCGGCGGAAAGGCCATGACGAGCTGTGGACCGCTTCGAAGGAAGAACTCCGGGACTTTTGGCTTCAAATCACG
GACAAGAGATTTAGCTCTCGATTGCAAACATTTTTTGACTTTTGTAAGTTGTCCAGTCTTTTCTTTGATTGTTCTAAATTTTATCCATAGGTGTGACACGGATCTGGACGGTCGCATATC
AGAAAACGAAGTGAAAGAGAGGTACATATGGAGTTGATTTTACTCCCTCTGCTTTTGTTTGAGCGCTAAACTAAAGGAACAAGCCCCGGATTGCAGATAATTCTACTCAGTGCGTCGGCG
AACAAGCTCTCGTTTCTGCAAGAGCAAGCTGAAGAATACGCAGCTCTCATCATGGGAGAACTCGATCAGAATAAACAAGGATATATTGAGAGGTAAGAAGCTTCCTACCACGCAACCTTT
CAACGTTCAACTTATTTCAGGTGAAACAACTTGAACGGTTGATGCGAGAGCCGATCGCACTCGCTGAGGATCCGTCCTATGGGTACGCGTGTGCTCCAACTTTACACTCTCGAAGAAGAA
ACCGATTGCATTTACTCCAGAGAACGATCAAGTACTTCGCTCTGGACAACTGGCAGCGGATATGGGTGCTGTGCGTGTGGTTTCTCGCCATGACCGGTCTTTTCACCTGGAAGTTCATAG
AGTACAAGAACAGAGCCGCTTTTAAGATCATGGGATACTGTGTGTGCACGGCCAAAGGCGCTGCGGAGACTTTGAAACTCAACATGGCATTGGTCCTGCTGCCAGTTTGCAGGATCACAA
TCACGTCCTTACGCTCCACTGTTTTCGGATCCATACTACCTTTCAACGACAACATCAACTTTCACAAGAGGTATGACTTCGTTTGTTCCTGTGTTTGTACGCATGCTTTCTTACGATGGC
CTGTTTTCCAGCTTATTGCTGCAGCGATTTTGTTCGGCGTTTTGCTTCACGGAGGAACTCATATTGCTTGTGACTTCCCCAAGATGGCCAACGCAAACAGTCGTATATTTCTTGATACTA
TTGGGCATGGTTTCCACGGCCGGCAACCATCTTTCCTTGGCATATTGGCTTCGATTGAGGGGATTACGGGGATTATTATGGTGGTCCTGATGTCGATAGCTTTCCTTCTTGCAACGCACT
GGTCCCGCAAGAACATCGTCAGGCTCCCTTGGCCCCTCCACAGGTTAACAGGATTCAACGCATTTTGGTACTCGCATCATCTTTTTATTTTGGTCTACGCCCTGCTGATCATACACTCGG
TGTTTCTCTTCCTGACCCCAGACTGGCAGCAAAAGACGCGGTACCTACATTATGATCTGATTGACTTCTGATATTTTTTGTACTGCAGACGTGGATATATCTATCCTGTCCATTGCTGCT
GTACGTTGGCGAGAGGTTCCTGCGCGTTTTAAGATCGAGGCAGCATCGAGTCAACATAGTAAAGAGGTAACTTTCCGCAGCAAATTGTCTCTCACGCTGAAACTTTGTTTCACAGGCAGC
AATTCATCCTGGCAACGTTCTTGCCTTGGACATGACAAAACCTCCAGGCTTCAAGTATCGGAGTGGCATGTACATGTTTCTGCAGTGTCCAGCGATCTCGCCATTCGAGTGTGGTAAAAA
TCTTGGTGACCCTAGCAAGCAGATTGAAACACTTTTTCTTCTTCTTTTGTGTGGCCAGGCATCCCTTCTCGATCACGTCTGCGCCCGACGACGAGTTTTTAAATGTGCACATACGGACGG
TGGGGGACTGGACCAAGGAAATGAGGAAAATCTTTGCCAAGAGGTTTGTTTGCTTCCCCTTCAATGCCTGTCCTGATCCACAGTTGTGCGTAGGCAGTTGACACTAGCTCTTCCATCGAC
GATTCACGGTCAGTGATCCCAACAACCAAACGTTTCCGTTAGTCCGCGGCTGGCTGGCTTACATCCCCTGACAGGTTTCCAAAGCTCTACATTGATGGACCTTATGGCGCTCCTGCTCAG
GACTACCGAAAGTATGACGTGATGCTCCTCGTTGGCTTGGGAATCGGAGCTACACCTTTTATCAGCATCTTAAAGGACATGCTCAACAACATCAAATCCACGGAGCAACACAGTCGGTAA
GCTTCTCTCTTTTGTTTTCTTGTTCTTTTCTTAGCACAAGTTGTGTTGCTTGCTTGCTCGCAGGACATAGACTTTAGCAAGCCGTTTGATAGCCCGAGAAGAAAGAGCCGCAAGTCTCGT
GGCCCAACAAACGCCTACTTCTACTGGGTCACCAGAGAGCAAGGCTCGTTCGAGTGGTTCAAAGGCGTCATGAATGAGGTGGCCGAAATAGATCACAAGAGGTCAGCCACTCGTCACCAA
TCTTAAGTCAGCCCCGCAACCACGATAGAAGCTCTTGGTTGATTGACTCAAAAGAAAAGATTTATTGCTGACGTATAAAGGTTTTGCTTCCGCAGGCAGTAATTGAGATGCACAACTACC
TCACAAGCGTGTACGAGGAAGGTGACGCGCGCTCGGCTCTCATTGCAATGGTACAAGCTCTACACCACACCAAAAACGGCGTGGATATCGTCTCGGGCACCCGGGGGTAAAAAACTTTCA
TCCCCAGAGCTTTCGCTAAGATCTTCTTTTCTTCTTCTTTGTGCCCAGGCACGCACTCACTTCGCAAGGCCAAACTGGGACAAGGTGTTCGCACGTCTCACTGCCACACACGACAATTCA
AGGATAGAGGTAAGAAGAAGAGAAGAAAATGATGAGAGCAAACTCCACTTACTTTGGTTGTTGTTAGGAGTGTTCTACTGCGGGCCTTCGCAAGTCGCCAAAGAGTTAGATGTGCTGTCC
CGGAAATATTCCCAAGAGTCCAACACCAAATTTATATTCCACAAGGAGAACTTTTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAGCGATTCCAAGGAATTTGCGGAGTTGCTGTTTGATGCTCTAGCCCGGCGGAAAGGCCATGACGAGCTGTGGACCGCTTCGAAGGAAGAACTCCGGGACTTTTGGCTTCAAATCACG
GACAAGAGATTTAGCTCTCGATTGCAAACATTTTTTGACTTGTGTGACACGGATCTGGACGGTCGCATATCAGAAAACGAAGTGAAAGAGATAATTCTACTCAGTGCGTCGGCGAACAAG
CTCTCGTTTCTGCAAGAGCAAGCTGAAGAATACGCAGCTCTCATCATGGGAGAACTCGATCAGAATAAACAAGGATATATTGAGGTGAAACAACTTGAACGGTTGATGCGAGAGCCGATC
GCACTCGCTGAGGATCCGTCCTATGGGTACGCGTGTGCTCCAACTTTACACTCTCGAAGAAGAAACCGATTGCATTTACTCCAGAGAACGATCAAGTACTTCGCTCTGGACAACTGGCAG
CGGATATGGGTGCTGTGCGTGTGGTTTCTCGCCATGACCGGTCTTTTCACCTGGAAGTTCATAGAGTACAAGAACAGAGCCGCTTTTAAGATCATGGGATACTGTGTGTGCACGGCCAAA
GGCGCTGCGGAGACTTTGAAACTCAACATGGCATTGGTCCTGCTGCCAGTTTGCAGGATCACAATCACGTCCTTACGCTCCACTGTTTTCGGATCCATACTACCTTTCAACGACAACATC
AACTTTCACAAGCTTATTGCTGCAGCGATTTTGTTCGGCGTTTTGCTTCACGGAGGAACTCATATTGCTTGTGACTTCCCCAAGATGGCCAACGCAAACAGTCGTATATTTCTTGATACT
ATTGGGCATGGTTTCCACGGCCGGCAACCATCTTTCCTTGGCATATTGGCTTCGATTGAGGGGATTACGGGGATTATTATGGTGGTCCTGATGTCGATAGCTTTCCTTCTTGCAACGCAC
TGGTCCCGCAAGAACATCGTCAGGCTCCCTTGGCCCCTCCACAGGTTAACAGGATTCAACGCATTTTGGTACTCGCATCATCTTTTTATTTTGGTCTACGCCCTGCTGATCATACACTCG
GTGTTTCTCTTCCTGACCCCAGACTGGCAGCAAAAGACGACGTGGATATATCTATCCTGTCCATTGCTGCTGTACGTTGGCGAGAGGTTCCTGCGCGTTTTAAGATCGAGGCAGCATCGA
GTCAACATAGTAAAGGCAGCAATTCATCCTGGCAACGTTCTTGCCTTGGACATGACAAAACCTCCAGGCTTCAAGTATCGGAGTGGCATGTACATGTTTCTGCAGTGTCCAGCGATCTCG
CCATTCGAGTGGCATCCCTTCTCGATCACGTCTGCGCCCGACGACGAGTTTTTAAATGTGCACATACGGACGGTGGGGGACTGGACCAAGGAAATGAGGAAAATCTTTGCCAAGTCCGCG
GCTGGCTGGCTTACATCCCCTGACAGGTTTCCAAAGCTCTACATTGATGGACCTTATGGCGCTCCTGCTCAGGACTACCGAAAGTATGACGTGATGCTCCTCGTTGGCTTGGGAATCGGA
GCTACACCTTTTATCAGCATCTTAAAGGACATGCTCAACAACATCAAATCCACGGAGCAACACAAGCCGTTTGATAGCCCGAGAAGAAAGAGCCGCAAGTCTCGTGGCCCAACAAACGCC
TACTTCTACTGGGTCACCAGAGAGCAAGGCTCGTTCGAGTGGTTCAAAGGCGTCATGAATGAGGTGGCCGAAATAGATCACAAGGCAGTAATTGAGATGCACAACTACCTCACAAGCGTG
TACGAGGAAGGTGACGCGCGCTCGGCTCTCATTGCAATGGTACAAGCTCTACACCACACCAAAAACGGCGTGGATATCGTCTCGGGCACCCGGGCACGCACTCACTTCGCAAGGCCAAAC
TGGGACAAGGTGTTCGCACGTCTCACTGCCACACACGACAATTCAAGGATAGGAGTGTTCTACTGCGGGCCTTCGCAAGTCGCCAAAGAGTTAGATGTGCTGTCCCGGAAATATTCCCAA
GAGTCCAACACCAAATTTATATTCCACAAGGAGAACTTTTAG

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAGCGATT CCAAGGAATT TGCGGAGTTG CTGTTTGATG CTCTAGCCCG GCGGAAAGGC CATGACGAGC TGTGGACCGC TTCGAAGGAA GAACTCCGGG ACTTTTGGCT TCAAATCACG  GACAAGAGAT TTAGCTCTCG ATTGCAAACA TTTTTTGACT TGTGTGACAC GGATCTGGAC GGTCGCATAT CAGAAAACGA AGTGAAAGAG ATAATTCTAC TCAGTGCGTC GGCGAACAAG  CTCTCGTTTC TGCAAGAGCA AGCTGAAGAA TACGCAGCTC TCATCATGGG AGAACTCGAT CAGAATAAAC AAGGATATAT TGAGGTGAAA CAACTTGAAC GGTTGATGCG AGAGCCGATC  GCACTCGCTG AGGATCCGTC CTATGGGTAC GCGTGTGCTC CAACTTTACA CTCTCGAAGA AGAAACCGAT TGCATTTACT CCAGAGAACG ATCAAGTACT TCGCTCTGGA CAACTGGCAG  CGGATATGGG TGCTGTGCGT GTGGTTTCTC GCCATGACCG GTCTTTTCAC CTGGAAGTTC ATAGAGTACA AGAACAGAGC CGCTTTTAAG ATCATGGGAT ACTGTGTGTG CACGGCCAAA  GGCGCTGCGG AGACTTTGAA ACTCAACATG GCATTGGTCC TGCTGCCAGT TTGCAGGATC ACAATCACGT CCTTACGCTC CACTGTTTTC GGATCCATAC TACCTTTCAA CGACAACATC  AACTTTCACA AGCTTATTGC TGCAGCGATT TTGTTCGGCG TTTTGCTTCA CGGAGGAACT CATATTGCTT GTGACTTCCC CAAGATGGCC AACGCAAACA GTCGTATATT TCTTGATACT  ATTGGGCATG GTTTCCACGG CCGGCAACCA TCTTTCCTTG GCATATTGGC TTCGATTGAG GGGATTACGG GGATTATTAT GGTGGTCCTG ATGTCGATAG CTTTCCTTCT TGCAACGCAC  TGGTCCCGCA AGAACATCGT CAGGCTCCCT TGGCCCCTCC ACAGGTTAAC AGGATTCAAC GCATTTTGGT ACTCGCATCA TCTTTTTATT TTGGTCTACG CCCTGCTGAT CATACACTCG  GTGTTTCTCT TCCTGACCCC AGACTGGCAG CAAAAGACGA CGTGGATATA TCTATCCTGT CCATTGCTGC TGTACGTTGG CGAGAGGTTC CTGCGCGTTT TAAGATCGAG GCAGCATCGA  GTCAACATAG TAAAGGCAGC AATTCATCCT GGCAACGTTC TTGCCTTGGA CATGACAAAA CCTCCAGGCT TCAAGTATCG GAGTGGCATG TACATGTTTC TGCAGTGTCC AGCGATCTCG  CCATTCGAGT GGCATCCCTT CTCGATCACG TCTGCGCCCG ACGACGAGTT TTTAAATGTG CACATACGGA CGGTGGGGGA CTGGACCAAG GAAATGAGGA AAATCTTTGC CAAGTCCGCG  GCTGGCTGGC TTACATCCCC TGACAGGTTT CCAAAGCTCT ACATTGATGG ACCTTATGGC GCTCCTGCTC AGGACTACCG AAAGTATGAC GTGATGCTCC TCGTTGGCTT GGGAATCGGA  GCTACACCTT TTATCAGCAT CTTAAAGGAC ATGCTCAACA ACATCAAATC CACGGAGCAA CACAAGCCGT TTGATAGCCC GAGAAGAAAG AGCCGCAAGT CTCGTGGCCC AACAAACGCC  TACTTCTACT GGGTCACCAG AGAGCAAGGC TCGTTCGAGT GGTTCAAAGG CGTCATGAAT GAGGTGGCCG AAATAGATCA CAAGGCAGTA ATTGAGATGC ACAACTACCT CACAAGCGTG  TACGAGGAAG GTGACGCGCG CTCGGCTCTC ATTGCAATGG TACAAGCTCT ACACCACACC AAAAACGGCG TGGATATCGT CTCGGGCACC CGGGCACGCA CTCACTTCGC AAGGCCAAAC  TGGGACAAGG TGTTCGCACG TCTCACTGCC ACACACGACA ATTCAAGGAT AGGAGTGTTC TACTGCGGGC CTTCGCAAGT CGCCAAAGAG TTAGATGTGC TGTCCCGGAA ATATTCCCAA 
GAGTCCAACA CCAAATTTAT ATTCCACAAG GAGAACTTTT AG 

Retrieve as FASTA