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Entry information : SmPrx24-2_30 ( SmPrx24b_30)
Entry ID 6195
Creation 2008-07-01 (Christophe Dunand)
Last sequence changes 2016-02-02 (Catherine Mathe)
Sequence status complete
Reviewer Catherine Mathe
Last annotation changes 2016-02-03 (Catherine Mathe)
Peroxidase information: SmPrx24-2_30 ( SmPrx24b_30)
Name (synonym) SmPrx24-2_30 ( SmPrx24b_30)
Class Class III peroxidase    [Orthogroup: Prx279]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type Adipose tissue
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmPrx24-2_30
start..stop		 S start..stop
SmPrx65-2_30 654 0 1..326 1..326
SmPrx24-1_80 643 0 1..326 1..327
SmPrx52-1_16 323 3.01e-110 8..326 32..346
SmPrx52-2_1 323 4.7e-110 8..326 32..346
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '6195' 'join(1427851..1428270,1428357..1428522,1428577..1428971)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1427851..1428270 418 N° 2 1428357..1428522 164 N° 3 1428577..1428971 393  
join(1427851..1428270,1428357..1428522,1428577..1428971)


exon

Literature and cross-references SmPrx24-2_30 ( SmPrx24b_30)
Literature JGI
DNA ref. Phytozome 12:   Scaffold_30 (1427851..1428971)
mRNA ref. JGI transcript:   232763 [Incorrect prediction]
EST ref. GenBank:   FE468639.1 [5' end]  FE468640.1 [Fragment]
Protein sequence: SmPrx24-2_30 ( SmPrx24b_30)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   326 (305)
PWM (Da):   %s   34678.81 (32331.5)  
PI (pH):   %s   8.41 (8.41) Peptide Signal:   %s   cut: 22 range:22-326
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAGRISMLLLLLPVLVPVMDAAAGGLTPGFYQQSCPNAESMTRSTVQRLTLLDPTLSAALVRLVFHDCQVQGCDGSILLATTKNQSFSPVTTSELASSNNFGIRRLDAIDRIKSVLEASC
PGVVSCADIVVMAARDAIALSGGPTIPILTGRRDGTTASAKQADDSLFPPQTPLDRVLSVFQSQGLDTVDTVALLGGHTLGVSHCPSVVNRLYPRMDSSLPLGFGASLRLRCPATIPMNN
LSIIANDFTNLAFDNRFYSDVIAGTGVLTVDQQLASDPRTRGIVNQFAADRAAFFRAFARGFQKMSHLNVLTSNAGQVRRSCRTAN*

Retrieve as FASTA  
Remarks Complete sequence from genomic (introns 2 and 3) and 2 ESTs (genomic contamination!!). Incorrect transcript from JGI (PS is missing).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCGGAAGAATCTCAATGCTGCTCCTGTTGCTTCCAGTTCTTGTTCCGGTGATGGATGCAGCAGCAGGAGGCCTGACCCCGGGATTCTATCAGCAGAGTTGTCCGAACGCCGAATCC
ATGACACGTTCCACAGTCCAGCGACTGACCCTGCTCGATCCAACTCTCTCCGCTGCGCTGGTCCGCCTAGTCTTCCACGACTGCCAAGTCCAGGGCTGCGATGGATCCATCCTTCTCGCC
ACCACCAAAAATCAATCCTTCTCGCCGGTCACCACCAGCGAGCTCGCCTCCTCCAACAACTTTGGAATCCGGCGACTGGACGCCATCGACCGGATTAAGTCGGTGCTCGAGGCCTCCTGC
CCTGGCGTTGTGTCGTGCGCGGACATCGTCGTCATGGCTGCCCGGGACGCCATTGCTCTGTGGTAAGACAACAAAAGTTTCCATCATTTCGGAAGAAAGAAAGAATGCGAAAGAGCTGAC
CATTCTGATCTCGCTTGGATTTTCACAGTCTGGAGGGCCGACGATACCGATCCTGACCGGCAGAAGAGATGGAACCACAGCCAGCGCCAAGCAAGCCGACGATTCTCTTTTCCCGCCACA
AACTCCGCTCGATCGGGTGCTCTCCGTCTTCCAATCGCAAGGCCTCGACACGGTGGATACAGTAGCGCTGCTCGCGGTATTTCACGCCTGCTCGACCTTCTTGCCCGTAATATCGTTCGA
TCTTGCGCAGGAGGCCACACCCTGGGAGTGTCGCACTGCCCTAGCGTCGTCAATCGCCTCTACCCGCGCATGGATTCATCGCTGCCGCTGGGATTCGGCGCGTCGCTGCGCCTGCGCTGC
CCGGCCACGATCCCGATGAACAACCTCAGCATCATCGCCAACGATTTCACAAACCTGGCCTTCGACAATCGCTTCTACAGCGATGTGATCGCCGGCACCGGCGTCCTCACGGTCGATCAG
CAGCTCGCCAGCGATCCGCGCACCCGCGGCATCGTCAATCAATTCGCCGCCGACCGTGCCGCCTTCTTCCGCGCATTCGCGCGAGGGTTCCAGAAAATGTCCCACCTCAACGTGCTCACG
AGCAATGCCGGACAAGTACGGCGGAGCTGCCGTACAGCCAACTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCGGAAGAATCTCAATGCTGCTCCTGTTGCTTCCAGTTCTTGTTCCGGTGATGGATGCAGCAGCAGGAGGCCTGACCCCGGGATTCTATCAGCAGAGTTGTCCGAACGCCGAATCC
ATGACACGTTCCACAGTCCAGCGACTGACCCTGCTCGATCCAACTCTCTCCGCTGCGCTGGTCCGCCTAGTCTTCCACGACTGCCAAGTCCAGGGCTGCGATGGATCCATCCTTCTCGCC
ACCACCAAAAATCAATCCTTCTCGCCGGTCACCACCAGCGAGCTCGCCTCCTCCAACAACTTTGGAATCCGGCGACTGGACGCCATCGACCGGATTAAGTCGGTGCTCGAGGCCTCCTGC
CCTGGCGTTGTGTCGTGCGCGGACATCGTCGTCATGGCTGCCCGGGACGCCATTGCTCTGTCTGGAGGGCCGACGATACCGATCCTGACCGGCAGAAGAGATGGAACCACAGCCAGCGCC
AAGCAAGCCGACGATTCTCTTTTCCCGCCACAAACTCCGCTCGATCGGGTGCTCTCCGTCTTCCAATCGCAAGGCCTCGACACGGTGGATACAGTAGCGCTGCTCGGAGGCCACACCCTG
GGAGTGTCGCACTGCCCTAGCGTCGTCAATCGCCTCTACCCGCGCATGGATTCATCGCTGCCGCTGGGATTCGGCGCGTCGCTGCGCCTGCGCTGCCCGGCCACGATCCCGATGAACAAC
CTCAGCATCATCGCCAACGATTTCACAAACCTGGCCTTCGACAATCGCTTCTACAGCGATGTGATCGCCGGCACCGGCGTCCTCACGGTCGATCAGCAGCTCGCCAGCGATCCGCGCACC
CGCGGCATCGTCAATCAATTCGCCGCCGACCGTGCCGCCTTCTTCCGCGCATTCGCGCGAGGGTTCCAGAAAATGTCCCACCTCAACGTGCTCACGAGCAATGCCGGACAAGTACGGCGG
AGCTGCCGTACAGCCAACTAA

Retrieve as FASTA