View Redoxidase 6213

Entry information : SmDiOx-2_8 (SmDiOxb_8)

Entry ID	6213
Creation	2010-03-03 (Christophe Dunand)
Last sequence changes	2011-02-23 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2011-02-23 (Christophe Dunand)

Peroxidase information: SmDiOx-2_8 (SmDiOxb_8)

Name (synonym)

SmDiOx-2_8 (SmDiOxb_8)

Class

Alpha-dioxygenase [Orthogroup: DiOx001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella

Organism

Selaginella moellendorffii [TaxId: 88036 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SmDiOx-2_8 start..stop	S start..stop
SmDiOx-1_0	1155	0	1..571	1..574
PabDiOx01	702	0	42..571	97..623
CclDiOx02	689	0	7..571	62..623
HaDiOx06	685	0	48..571	107..627

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '6213' 'complement(join(2171242..2171419,2171476..2171719,2171791..2171993,2172057..2172293,2172359..2172504,2172579..2172781,2172828..2172961,2173023..2173181,2173248..2173340,2173417..2173533))'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	2173417..2173533	115	N° 2	2173248..2173340	91	N° 3	2173023..2173181	157	N° 4	2172828..2172961	132
N° 5	2172579..2172781	201	N° 6	2172359..2172504	144	N° 7	2172057..2172293	235	N° 8	2171791..2171993	201
N° 9	2171476..2171719	242	N° 10	2171242..2171419	176
complement(join(2171242..2171419,2171476..2171719,2171791..2171993,2172057..2172 293,2172359..2172504,2172579..2172781,2172828..2172961,2173023..2173181,2173248. .2173340,2173417..2173533))

Literature and cross-references SmDiOx-2_8 (SmDiOxb_8)

DNA ref.	Phytozome 12: scaffold_8 (2173533..2171242)

Protein sequence: SmDiOx-2_8 (SmDiOxb_8)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	571
PWM (Da):	63903.74
PI (pH):	7.1

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MISDRPFRRQTHGVAQAPACVLAVLSRHPEDTPPKLQLEKKSGGEHVNVKSGDYGSFIGRNAFAAASGSEELLDPHPSVVATKFLARKESEFADTGKQFNMIAASWIQFMIHDWVDHQED
TKEQEIVAPESVAAQCPLKEFRFLRTKEDETGSQDIALGHRNMRTSWWDGSVLYGSHDGALXRGCDGKLKIGQNGLLERDDHGVAISGDVKNTWAGVSILQALFVKEHNAVCDMLKRTHP
EFGDEELYLHARLVVAAVIAKIHTIDWTVELLKTKALDIGMHANWYGLLGKRIKSWIGHTGSSLLSGFIGMKEPINHGVPYALTEEFTCVYRLHPLLPDDIVLRDITGSAEEKQTKTPRA
TGKRIPMIELIGSEGEKTLGSIGNERMIASLGHQACGALVLFNYPQWMRDLPQTGTDGINRPNHVDMAALEIYRDRERKVARYNAFRRNMLMIPIKKWEDLTDDKQTLALLREIYGEDVE
KLDLLVGLLAEKKIKGFAISETSFFIFLLMATRRLEADRFFTSNFNAKSYTKEGLAWVNNTESLKDVLQRHHGNLVDKWLNARSAFSVWSA

Retrieve as FASTA

Remarks

Complete sequence from genomic. No prediction from JGI. No EST.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

GATATCAGATCGTCCATTTCGTCGACAAACACACGGCGTGGCACAAGCTCCCGCTTGTGTTCTCGCTGTTTTATCTCGACATCCGGAGGACACTCCACCAAAACTACAACTTGAAGTACG
TCGGTCCTCCAATCTCAGAAGAAGAGAAAAAAGCCGCGCAGGATGATTGCATAGCTCCGCCTTTCCGGAAGAAAAAAAATCCGGTGGCGAGCACGTCAATGTCAAAAGTGGAGACTATGG
ATCATTCATTGGGAGAAATGCCTTTGCTGCAGCATCCGGATCCGAGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTCATGAGATTCGATTTGCGTCGAGCAGGAACACTT
TTGGATCCACATCCCAGTGTTGTGGCGACCAAATTTCTGGCGAGAAAGGAATCCGAATTCGCGGACACGGGCAAGCAGTTCAACATGATCGCGGCGTCCTGGATCCAGTTTATGATCCAC
GACTGGGTCGACCACCAGGAAGACACAAAAGAGGTATGATTCGTGTGATCGAAGCCAAGGATTCTTCTCACGGATGATTTTGTTTTCGATCCAGCAAGAGAGATTGTAGCTCCGGAATCA
GTCGCAGCGCAGTGTCCCTTGAAGGAATTTCGGTTCCTCCGCACGAAAGAGGACGAAACGGGCTCGCAAGACATCGCTTTGGGCCATAGGAACATGAGAACATCGTGGTGGTACGAAACT
CTTGTAATTGGAGGGAAGTTTCATTTTACATTCTAGGGATATGGGAGTGTTCTATACGGGAGCCACGACGGTGCGCTGGNNCGAGGGTGCGATGGCAAACTTAAGATTGGCCAAAATGGC
CTCCTTGAGCGCGACGACCACGGCGTCGCCATCTCCGGCGATGTCAAGAACACCTGGGCCGGGGTTTCGATTCTCCAGGCGCTTTTCGTCAAGGAACACAATGCCGTGTGTGACATGCTC
AAGGTGCGTGTGTCTCGATCGATCTCGAGCTCTGGATTGCCGCTAACTCGTGGCTATTCTCCGATATTTCGTTCCAGAGAGGACGCATCCGGAATTCGGGGACGAAGAGCTCTACCTTCA
TGCGAGATTGGTGGTCGCTGCCGTGATTGCCAAGATTCACACCATCGACTGGACTGTGGAGCTGCTCAAGACGAAAGCGCTCGACATTGGAATGCATGCAAACTGGTGAGCTTTTCTTCT
TCACTTCCATCTTCTCCAGCGATTTCGACTGACTTCGAGAGTGCATCCAGGTGTATGGTTTACTGGGGAAGAGAATCAAGAGCTGGATCGGGCACACTGGATCCTCGCTGCTGAGTGGAT
TTATTGGAATGAAGGAGCCAATAAACCACGGCGTTCCGTACGCCTTGACGGAGGAGTTTACGTGCGTTTATCGCCTCCATCCTTTGCTACCAGACGACATTGTGCTGAGAGACATCACTG
GCAGTGCGGAAGAGAAACAAACAAAGACTCCTCGAGCCACTGGAAAGAGGTACCTCCATCTCTTTTTTTTTCTTTTACCACTCCTGACTAAACTTTTTCTTGTGCTCTATAGAAAATTCC
CATGATCGAGCTCATTGGAAGTGAGGGAGAAAAAACGCTGGGTAGCATTGGAAACGAGAGAATGATCGCGTCGCTTGGGCATCAAGCTTGTGGGGCGCTCGTTCTTTTCAACTATCCGCA
GTGGATGAGGGACCTTCCCCAGACTGGAACCGACGGCATAAACCGGCCGAATCACGTCGACATGGCCGCCCTCGAGAGTAAGTTCTGTTCTTGCCAGACGCTTGTTGTCCTCGATCTTAT
CTTTGCTTCTCTGTAATTTTTGTCCCAGTTTTTACCGTGATCGCGAAAGAAAAGTTGCAAGATACAATGCCTTTCGGAGAAACATGTTGATGATTCCAATCAAGAAGTGGGAGGATCTCA
CCGATGACAAACAAACACTCGCCTTGCTGAGGGAGATATACGGCGAGGACGTGGAGAAGCTCGACTTGCTCGTCGGCTTGCTGGCGGAGAAGAAGATCAAAGGCTTCGCCATTAGCGAGA
CGTCGTTTTTCATCTTTCTCCTCATGGCCACCAGGTAAAAACTGCTAGAACCAAGTCACAGTTTTAACACATTGCATTGCTTTCCCACAGGAGAGGCTAGAAGCTGATCGATTCTTTACC
TCAAACTTTAACGCCAAGAGCTACACCAAGGAGGGACTGGCGTGGGTGAACAACACCGAGAGCCTCAAAGACGTCCTCCAGAGGCACCACGGCAACTTGGTTGATAAGTGGCTAAACGCA
CGCAGCGCATTCAGCGTGTGGAGTGCGTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

GATATCAGATCGTCCATTTCGTCGACAAACACACGGCGTGGCACAAGCTCCCGCTTGTGTTCTCGCTGTTTTATCTCGACATCCGGAGGACACTCCACCAAAACTACAACTTGAAGTAAA
ATCCGGTGGCGAGCACGTCAATGTCAAAAGTGGAGACTATGGATCATTCATTGGGAGAAATGCCTTTGCTGCAGCATCCGGATCCGAGGTACTTTTGGATCCACATCCCAGTGTTGTGGC
GACCAAATTTCTGGCGAGAAAGGAATCCGAATTCGCGGACACGGGCAAGCAGTTCAACATGATCGCGGCGTCCTGGATCCAGTTTATGATCCACGACTGGGTCGACCACCAGGAAGACAC
AAAAGAGGTAGAGATTGTAGCTCCGGAATCAGTCGCAGCGCAGTGTCCCTTGAAGGAATTTCGGTTCCTCCGCACGAAAGAGGACGAAACGGGCTCGCAAGACATCGCTTTGGGCCATAG
GAACATGAGAACATCGTGGTGGTATGGGAGTGTTCTATACGGGAGCCACGACGGTGCGCTGGNNCGAGGGTGCGATGGCAAACTTAAGATTGGCCAAAATGGCCTCCTTGAGCGCGACGA
CCACGGCGTCGCCATCTCCGGCGATGTCAAGAACACCTGGGCCGGGGTTTCGATTCTCCAGGCGCTTTTCGTCAAGGAACACAATGCCGTGTGTGACATGCTCAAGAGGACGCATCCGGA
ATTCGGGGACGAAGAGCTCTACCTTCATGCGAGATTGGTGGTCGCTGCCGTGATTGCCAAGATTCACACCATCGACTGGACTGTGGAGCTGCTCAAGACGAAAGCGCTCGACATTGGAAT
GCATGCAAACTGGTATGGTTTACTGGGGAAGAGAATCAAGAGCTGGATCGGGCACACTGGATCCTCGCTGCTGAGTGGATTTATTGGAATGAAGGAGCCAATAAACCACGGCGTTCCGTA
CGCCTTGACGGAGGAGTTTACGTGCGTTTATCGCCTCCATCCTTTGCTACCAGACGACATTGTGCTGAGAGACATCACTGGCAGTGCGGAAGAGAAACAAACAAAGACTCCTCGAGCCAC
TGGAAAGAGAATTCCCATGATCGAGCTCATTGGAAGTGAGGGAGAAAAAACGCTGGGTAGCATTGGAAACGAGAGAATGATCGCGTCGCTTGGGCATCAAGCTTGTGGGGCGCTCGTTCT
TTTCAACTATCCGCAGTGGATGAGGGACCTTCCCCAGACTGGAACCGACGGCATAAACCGGCCGAATCACGTCGACATGGCCGCCCTCGAGATTTACCGTGATCGCGAAAGAAAAGTTGC
AAGATACAATGCCTTTCGGAGAAACATGTTGATGATTCCAATCAAGAAGTGGGAGGATCTCACCGATGACAAACAAACACTCGCCTTGCTGAGGGAGATATACGGCGAGGACGTGGAGAA
GCTCGACTTGCTCGTCGGCTTGCTGGCGGAGAAGAAGATCAAAGGCTTCGCCATTAGCGAGACGTCGTTTTTCATCTTTCTCCTCATGGCCACCAGGAGGCTAGAAGCTGATCGATTCTT
TACCTCAAACTTTAACGCCAAGAGCTACACCAAGGAGGGACTGGCGTGGGTGAACAACACCGAGAGCCTCAAAGACGTCCTCCAGAGGCACCACGGCAACTTGGTTGATAAGTGGCTAAA
CGCACGCAGCGCATTCAGCGTGTGGAGTGCGTGA

Retrieve as FASTA