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Entry information : Sm1CysPrx02-1_0 (Sm1CysPrx02a_0)
Entry ID 6382
Creation 2008-10-10 (Christophe Dunand)
Last sequence changes 2011-02-01 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-02-01 (Christophe Dunand)
Peroxidase information: Sm1CysPrx02-1_0 (Sm1CysPrx02a_0)
Name (synonym) Sm1CysPrx02-1_0 (Sm1CysPrx02a_0)
Class 1-Cysteine peroxiredoxin    [Orthogroup: 1CysPrx001]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type Whole plant
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value Sm1CysPrx02-1_0
start..stop		 S start..stop
Sm1CysPrx02-2_8 458 2.81e-167 1..220 1..220
Egu1CysPrx03 322 1.9e-113 1..220 1..220
Egr1CysPrx03 322 1.9e-113 1..220 1..220
Lu1CysPrx219 321 5.61e-113 1..220 1..220
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 4543872..4543989 116 N° 2 4544052..4544200 147 N° 3 4544285..4544431 145 N° 4 4544502..4544750 247
join(4543872..4543989,4544052..4544200,4544285..4544431,4544502..4544750)


exon

Literature and cross-references Sm1CysPrx02-1_0 (Sm1CysPrx02a_0)
Literature Richardson,P., Lucas,S., Rokhsar,D., Wang,M. and Lindquist,E.A. DOE Joint Genome Institute Selaginella moellendorffii EST project. Unpublished (2008).
DNA ref. Phytozome 12:   scaffold_0 (4543872..4544750)
EST ref. GenBank:   FE461036.1 [5' end]
Cluster/Prediction ref. UniGene:   Smo.4755
Protein sequence: Sm1CysPrx02-1_0 (Sm1CysPrx02a_0)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   220
PWM (Da):   %s   24275.24 Transmb domain:   %s   i7-26o
PI (pH):   %s   6.93
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MPGISIGDEIPDIHADSTHGPINLHEFCKNNWTLVFSHPADFTPVCTTELGSVAKYQPEIEKRGAKLLGLSCDTVEEHKAWTKDVEAYTGACVKYPIMADPTREISRKLNMLDPDEKDSS
GQPVASRALHIVGPDCRIRVSFMYPASVGRNFDEVIRVLDALQLSSKHKIACPVNWKPGDHVVISPSVSDEEAKKMFPQGYKTVDLPSGKKYMRLVKVD*

Retrieve as FASTA  
Remarks Complete sequence from genomic (3 introns) and 1 ESTs. Unigene compiles ESTs from both haplotypes. Strain="Plant Delights".
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCCAGGCATTTCGATTGGAGATGAGATTCCGGACATCCACGCCGACTCTACTCACGGCCCCATAAATCTTCACGAGTTTTGCAAGAACAACTGGACGCTCGTCTTCTCTCATCCCGCG
GTAAGAACGTTCTTGTTCCAAGAAGGCAAAAAAAAGAAGCATTTTGCTTCCCCTTCTTTCAGCTGACTTCACTCCGGTTTGCACCACCGAGCTCGGGAGCGTCGCCAAGTACCAGCCCGA
GATCGAGAAGCGAGGAGCCAAGCTGCTGGGCCTCTCCTGTGATACCGTCGAGGAGCACAAGGCCTGGACCAAGGATGTCGAAGCTTACACGCGGTGCGCGTCTTCCAACTCTCGCTGCAG
TGCAGTGATCTTATACCTATACCTTCCATCTGTTTTCTCTGTGACTCCGGGAACTAGACTGGAGCTTGCGTCAAGTACCCCATCATGGCCGATCCGACCCGGGAGATCTCCAGGAAGCTC
AACATGCTCGATCCGGACGAGAAAGATTCCTCGGGCCAGCCGGTTGCTTCGAGGGCTCTTCACATCGTCGGTCCTGACTGTCGGGGGTAGGATCCTTTGCATGCTTTCGCTTCTCATCGT
CTTCGTTTCATGCGTTGTCTCTTCTCTCTCTTGCAGATCAGGGTGAGCTTCATGTATCCTGCCTCGGTTGGACGCAACTTTGACGAGGTGATCCGCGTGCTGGATGCGCTGCAGCTCTCC
TCCAAGCACAAGATTGCCTGCCCCGTTAACTGGAAGCCCGGCGATCACGTCGTCATCTCCCCCTCGGTTTCCGACGAGGAGGCCAAGAAGATGTTCCCCCAGGGATACAAGACGGTCGAT
CTTCCTTCCGGGAAGAAGTACATGCGTCTTGTCAAGGTGGATTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCCAGGCATTTCGATTGGAGATGAGATTCCGGACATCCACGCCGACTCTACTCACGGCCCCATAAATCTTCACGAGTTTTGCAAGAACAACTGGACGCTCGTCTTCTCTCATCCCGCT
GACTTCACTCCGGTTTGCACCACCGAGCTCGGGAGCGTCGCCAAGTACCAGCCCGAGATCGAGAAGCGAGGAGCCAAGCTGCTGGGCCTCTCCTGTGATACCGTCGAGGAGCACAAGGCC
TGGACCAAGGATGTCGAAGCTTACACGACTGGAGCTTGCGTCAAGTACCCCATCATGGCCGATCCGACCCGGGAGATCTCCAGGAAGCTCAACATGCTCGATCCGGACGAGAAAGATTCC
TCGGGCCAGCCGGTTGCTTCGAGGGCTCTTCACATCGTCGGTCCTGACTGTCGGATCAGGGTGAGCTTCATGTATCCTGCCTCGGTTGGACGCAACTTTGACGAGGTGATCCGCGTGCTG
GATGCGCTGCAGCTCTCCTCCAAGCACAAGATTGCCTGCCCCGTTAACTGGAAGCCCGGCGATCACGTCGTCATCTCCCCCTCGGTTTCCGACGAGGAGGCCAAGAAGATGTTCCCCCAG
GGATACAAGACGGTCGATCTTCCTTCCGGGAAGAAGTACATGCGTCTTGTCAAGGTGGATTAG

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GTTTGTTTTG TTGGCTTGAT AATCGCGAGA GAGCAGCATA AGCTAGAGAC AAGATGCCAG GCATTTCGAT TGGAGATGAG ATTCCGGACA TCCACGCCGA CTCTACTCAC GGCCCCATAA  ATCTTCACGA GTTTTGCAAG AACAACTGGA CGCTCGTCTT CTCTCATCCC GCTGACTTCA CTCCGGTTTG CACCACCGAG CTCGGGAGCG TCGCCAAGTA CCAGCCCGAG ATCGAGAAGC  GAGGAGCCAA GCTGCTGGGC CTCTCCTGTG ATACCGTCGA GGAGCACAAG GCCTGGACCA AGGATGTCGA AGCTTACACG ACTGGAGCTT GCGTCAAGTA CCCCATCATG GCCGATCCGA  CCCGGGAGAT CTCCAGGAAG CTCAACATGC TCGATCCGGA CGAGAAAGAT TCCTCGGGCC AGCCGGTTGC TTCGAGGGCT CTTCACATCG TCGGTCCTGA CTGTCGGATC AGGGTGAGCT  TCATGTATCC TGCCTCGGTT GGACGCAACT TTGACGAGGT GATCCGCGTG CTGGATGCGC TGCAGCTCTC CTCCAAGCAC AAGATTGCCT GCCCCGTTAA CTGGAAGCCC GGCGATCACG  TCGTCATCTC CCCCTCGGTT TCCGACGAGG AGGCCAAGAA GATGTTCCCC CAGGGATACA AGACGGTCGA TCTTCCTTCC GGGAAGAAGT ACATGCGTCT TGTCAAGGTG GATTAGATGT 
GTGAAGTCCT GAGTCTTATA TGACTTATCT GCGTGGAAGT AATAATATTA GTAGAGCTTG TTAAG 

Retrieve as FASTA