RedOxiBase: View Perox 6389

Entry information : LinfAPx-CcP

Entry ID	6389
Creation	2008-10-17 (Marcel Zamocky)
Last sequence changes	2012-05-24 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2012-05-24 (Christophe Dunand)

Peroxidase information: LinfAPx-CcP

Name

LinfAPx-CcP

Class

Hybrid Ascorbate-Cytochrome C peroxidase [Orthogroup: APx-CcP001]

Taxonomy

Eukaryota Trypanosomatidae Leishmania

Organism

Leishmania infantum [TaxId: 5671 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	LinfAPx-CcP start..stop	S start..stop
LdonAPx-CcP01	633	0	1..303	1..303
LmAPx-CcP	610	0	1..303	1..303
LmexAPx-CcP01	587	0	1..303	1..303
LbraAPx-CcP	554	0	1..300	1..302

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	23760..24671	912
join(23760..24671)

Literature and cross-references LinfAPx-CcP

Literature	REFERENCE 1 Peacock C.S., Seeger K., Harris D., Murphy L., Ruiz J.C., Quail M.A., Peters N., Adlem E., Tivey A., Aslett M., Kerhornou A., Ivens A., Fraser A., Rajandream M.A., Carver T., Norbertczak H., Chillingworth T., Hance Z., Jagels K., , Berriman M. Comparative genomic analysis of three Leishmania species that cause diverse human disease. Nat. Genet. 39:839-847(2007). REFERENCE 2 Peacock,C.S.,et al., Analysis of genome architecture and content between three Leishmania species causing diverse human disease reveals only a small subset of species-specific genes. (unpublished in 2008)
Protein ref.	UniProtKB: A4I9H5
DNA ref.	GenBank: NC_009418.2 (23760..24671)
mRNA ref.	GenBank: XM_001468357

Protein sequence: LinfAPx-CcP

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	303
PWM (Da):	33601.79	Transmb domain:	i12-34o
PI (pH):	7.79

Sequence 0
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MSGTSRRAKG LFTGIAVGTF VSGAMFVSCA SARVEEPPFD IRALRADIES MISDKLELGP SLIRLAWHEA ASYDCFKKDG SPNSASMRFK PECLYEGNKG LDIPRKALEP LKKKYPQISY ADLWVLAAYV AIEYMGGPTI PFCWGRVDAK DGSVCGPDGR LPDGSKTQSH VREVFTRLGF NDQETVALIG AHTCGECHIK FSGYHGPWTH DKNGFDNSFF TQLLDEDWVL NPKVEKMQLM
DRATTKLMML PSDVSLLLDP GYRKYVELYA KDNDRFNKDF ANAFKKLTEL GTKNLHRAPA SGS

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 34, no intron). Strain="JPCM5".

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGTCCGGCA CCTCTCGGCG AGCGAAAGGC CTCTTTACCG GCATCGCTGT TGGCACCTTC GTGAGTGGTG CCATGTTTGT TTCCTGCGCC AGCGCACGCG TGGAGGAGCC GCCGTTCGAC ATCCGGGCTC TCCGCGCCGA CATTGAGAGC ATGATCTCTG ACAAGCTGGA ACTCGGACCT TCGCTGATTC GCCTCGCATG GCACGAGGCC GCTTCGTACG ACTGCTTCAA GAAGGATGGC TCTCCGAACT CAGCGTCGAT GCGCTTCAAA CCGGAGTGCC TGTACGAGGG TAACAAAGGT CTCGACATCC CTCGCAAGGC GCTGGAGCCG TTGAAGAAGA AGTACCCGCA AATATCTTAC GCGGATTTGT GGGTGCTCGC CGCCTACGTG GCCATCGAGT ACATGGGTGG TCCCACGATT CCGTTCTGCT GGGGTCGGGT GGATGCCAAG GATGGCTCTG TGTGTGGACC TGACGGGCGC CTGCCGGACG GCTCAAAGAC GCAAAGTCAC GTGCGCGAGG TGTTCACGCG TCTCGGGTTC AATGACCAGG AGACAGTGGC GCTCATCGGC GCGCACACGT GCGGTGAGTG CCACATCAAA TTCTCCGGCT ACCATGGACC GTGGACGCAC GACAAGAACG GTTTCGACAA CTCCTTCTTT ACGCAGTTGC TCGATGAGGA TTGGGTCTTG AATCCGAAGG TTGAGAAGAT GCAGCTGATG GACCGCGCGA CGACGAAGCT GATGATGCTT CCCAGTGACG TTTCCCTCCT CCTCGATCCC GGCTACCGCA AGTACGTGGA GCTGTACGCA AAGGACAACG ACCGCTTCAA CAAAGACTTT
GCGAATGCGT TCAAAAAGCT GACCGAGCTC GGCACCAAGA ACCTTCACAG AGCCCCCGCT TCGGGGAGCT AA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA