The peroxidases and oxidases database
Entry information : LePrx42 (Solyc08g007150.1.1[2.3])
Entry ID 640
Creation 2007-09-07 (Christophe Dunand)
Last sequence changes 2014-08-27 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2014-08-27 (Christophe Dunand)
Peroxidase information: LePrx42 (Solyc08g007150.1.1[2.3])
Name (synonym) LePrx42 (Solyc08g007150.1.1[2.3])
Class Class III peroxidase    [Orthogroup: Prx115]
Taxonomy Eukaryota Viridiplantae Streptophyta Solanaceae Solanum
Organism Lycopersicon esculentum (Tomato)    [TaxId: 4081 ]
Cellular localisation N/D
Tissue types Flower buds
Pollens
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value LePrx42
start..stop		 S start..stop
StPrx27 640 0 1..319 1..319
NtPrx40-1B 560 0 1..318 1..318
NtPrx40-1A 556 0 1..318 1..318
NtPrx39-1A 502 0 1..317 3..321
Literature and cross-references LePrx42 (Solyc08g007150.1.1[2.3])
Literature van der Hoeven,R. et al., unpublished.
EST ref. GenBank:   23018 [5' end]
Protein sequence: LePrx42 (Solyc08g007150.1.1[2.3])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   319 (301)
PWM (Da):   %s   35095.6 (32930.5)  
PI (pH):   %s   6.59 (6.39) Peptide Signal:   %s   cut: 19 range:19-319
Sequence 0
Send to BLAST
Send to Peroxiscan
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MTWPLLFLLF SSFACSHAQL TLDYYAKTCP QFDSIVRDIS QQKQTEFPAT AAATLRVFFH DCAVDGCDAS VLIKPTAFNK SELDYDINHS LAGDAFDLIT RIKTAVELAC PGVVSCADIL  ATATRNLVVI TGGPHYKVPL GRKDSLVSNV SNVEAHLTRE NATVDLMINK FQSMGFNVKD MVVLIGGGHT IGFVHCKEFA HRIFPTPDPT MNPVLVERLS KMCANYTNNS DMSAFLDVLS 
PGNFDNVLFK NLMKGIGVLG SDQLLYSDPR TKPFVELYAN NAIAFANDFA QAMEKVSVYQ VKSGQQGEVR KRCDSINHI* 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 8, no intron) and 3 ESTs. The TGI contains 6 ESTs from pennillii.
DNA ►
Send to BLAST
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ATGACTTGGC CATTGCTTTT TCTCTTGTTT TCATCTTTTG CTTGTTCTCA TGCACAACTT ACATTAGACT ACTATGCTAA AACATGTCCA CAATTTGATT CCATTGTGAG GGACATCTCT  CAACAAAAAC AAACGGAGTT CCCCGCCACG GCGGCCGCGA CCCTCCGCGT ATTTTTCCAC GACTGTGCTG TCGATGGTTG TGATGCCTCC GTCCTTATAA AACCAACCGC GTTCAACAAA  TCCGAGCTCG ACTACGACAT CAACCATTCC CTCGCCGGGG ACGCGTTTGA CCTAATCACC CGTATCAAGA CCGCAGTCGA GCTCGCTTGC CCGGGAGTCG TGTCGTGCGC GGACATATTA  GCGACCGCCA CCCGAAATCT CGTAGTTATC ACCGGCGGGC CCCACTACAA AGTCCCGTTG GGCCGGAAGG ACAGTCTAGT TTCCAACGTA TCAAACGTGG AAGCACACTT GACGCGTGAG  AACGCGACGG TTGACCTAAT GATAAATAAA TTCCAATCCA TGGGGTTTAA TGTCAAGGAC ATGGTTGTGT TGATTGGTGG TGGACATACA ATTGGATTTG TTCATTGTAA AGAGTTTGCT  CATAGGATTT TCCCAACTCC TGACCCTACA ATGAACCCAG TATTAGTTGA AAGATTGAGC AAAATGTGTG CAAATTATAC TAATAACAGT GACATGTCAG CCTTCCTAGA TGTTTTAAGT  CCTGGTAATT TTGACAATGT GTTGTTCAAG AATTTGATGA AGGGCATTGG GGTACTAGGT TCAGATCAAT TATTATATAG TGACCCTAGG ACAAAGCCAT TTGTTGAACT ATATGCTAAT  AATGCTATTG CATTTGCTAA TGATTTTGCT CAAGCAATGG AGAAAGTAAG TGTATATCAA GTCAAGAGTG GTCAACAAGG GGAGGTGAGG AAGAGATGTG ATTCTATTAA TCATATTTGA 

Retrieve as FASTA  
CDS►
Send to BLAST
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ATGACTTGGC CATTGCTTTT TCTCTTGTTT TCATCTTTTG CTTGTTCTCA TGCACAACTT ACATTAGACT ACTATGCTAA AACATGTCCA CAATTTGATT CCATTGTGAG GGACATCTCT  CAACAAAAAC AAACGGAGTT CCCCGCCACG GCGGCCGCGA CCCTCCGCGT ATTTTTCCAC GACTGTGCTG TCGATGGTTG TGATGCCTCC GTCCTTATAA AACCAACCGC GTTCAACAAA  TCCGAGCTCG ACTACGACAT CAACCATTCC CTCGCCGGGG ACGCGTTTGA CCTAATCACC CGTATCAAGA CCGCAGTCGA GCTCGCTTGC CCGGGAGTCG TGTCGTGCGC GGACATATTA  GCGACCGCCA CCCGAAATCT CGTAGTTATC ACCGGCGGGC CCCACTACAA AGTCCCGTTG GGCCGGAAGG ACAGTCTAGT TTCCAACGTA TCAAACGTGG AAGCACACTT GACGCGTGAG  AACGCGACGG TTGACCTAAT GATAAATAAA TTCCAATCCA TGGGGTTTAA TGTCAAGGAC ATGGTTGTGT TGATTGGTGG TGGACATACA ATTGGATTTG TTCATTGTAA AGAGTTTGCT  CATAGGATTT TCCCAACTCC TGACCCTACA ATGAACCCAG TATTAGTTGA AAGATTGAGC AAAATGTGTG CAAATTATAC TAATAACAGT GACATGTCAG CCTTCCTAGA TGTTTTAAGT  CCTGGTAATT TTGACAATGT GTTGTTCAAG AATTTGATGA AGGGCATTGG GGTACTAGGT TCAGATCAAT TATTATATAG TGACCCTAGG ACAAAGCCAT TTGTTGAACT ATATGCTAAT  AATGCTATTG CATTTGCTAA TGATTTTGCT CAAGCAATGG AGAAAGTAAG TGTATATCAA GTCAAGAGTG GTCAACAAGG GGAGGTGAGG AAGAGATGTG ATTCTATTAA TCATATTTGA 

Retrieve as FASTA