Sequence Properties
first value : protein
second value (mature protein) |
Length (aa):  |
560 (533) |
| PWM (Da): |
57226.13 (54473.6) |
Transmb domain: |
i7-26o (i7-26o) |
| PI (pH): |
4.88 (4.99) |
Peptide Signal: |
cut: 28 range:28-560 |
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Sequence
Send to BLAST
Send to Peroxiscan
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| *.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
MAPPPELAVV VPTMTLLVLA LLGAAVAGKI SYAPSTSPPA TTPTSPNQSP PTYHAPSQIP SSTSITPPSP SPKLSLLLPT NSQPIPSPIS YPPSQSPSIS NPPANSQPIP NTSPSSISPT
YPPSGRSSNP LISGPPIYPP SGSSNPSISS PPTYPQGVST NPLVSNSPTY PQSASPSPSI STPPTYAPSA SPSSSISTPP IYAPSTSPSS SISTPPIYPP SPSPSLSINS PPGSPTPSPS
SSISIPPTYP PSLSPSPSSA PSSGLSVGYY KHTCSGAETI VREVVTNAID SNRGTGAGLI RLFFHDCFVQ GCDASVLLNT TGSSEPTERA SAPNLSLRGF DVIDAAKAAL EAACPGVVSC
ADIVAFAGRD ATCILSGSAV SFDMPAGRHD GRVSLDSEAV ANLPPPFASL ERLEEMFAAK GLDVEDMVTL SGAHTVGRSH CSSFSDRLPP HVSDMNDTLS GTLATQCNSG GGGDTTVPQD
SVTPGGLDSQ YYRNVLNHEV LFASDAALLA SDQTADMVSA NAFTPGLWET KFKAAMVKMG RVGIKTSTDG EIRDKCWMVN *
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Retrieve as FASTA
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| Remarks |
Complete sequence from genomic (chromo 7, intron 1). No EST. Very long PS also found in orthologs from other monocotyledons. |
DNA ►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGAGTATC ACAGTATATA TATCACCGAC AGGGTTTCGG CGACAGAGTA CAGGTAGTAG GAGTATTTCT CGATCACGTC GTCTGATCAG TCACGAATAT TGGTCAAAGT AAGCTTGCAG
GAATAATGCA AACGATTAGC TGTGACGGCC GTTCATCTGC ATCTCAAACG ACACGCAAAG CTAGCTAGCT GGCTGCCTAA AATACAGTAC TACTATCCCG GCCGCGATTT CAGAAGAACC
TCGACCGACC TGAGACCAAT GCATGAGCTA GCTAGCTGTT GCTGTTGCGA CATTCCTGAC GCGTTTCTTC GATTCCTGCT GCATGCGCGG GCGATCGACT ATAAATTGGC AGGGCGCGCG
TACGTAATCC CGAGCAAAAC ACCTGATTTG TGCAAGGGAA AACGACTATT AGCCTAGCCG GCCGAGAGAG CGAGAGCAGC TAGCCATGCA TGGCGCCGCC GCCGGAGCTT GCCGTTGTCG
TTCCAACAAT GACCCTGCTA GTGCTAGCGC TGCTGGGGGC GGCCGTGGCG GGCAAGATCA GTTATGCTCC GAGCACAAGC CCACCCGCTA CTACTCCTAC TAGCCCAAAC CAAAGTCCAC
CAACATATCA TGCCCCAAGC CAGATCCCGT CGTCGACCTC AATAACTCCA CCTAGCCCAA GCCCTAAACT AAGCCTATTA TTACCCACTA ATTCTCAACC TATCCCAAGT CCAATCTCCT
ATCCACCAAG CCAAAGTCCA TCAATCTCAA ATCCACCAGC TAATTCTCAA CCTATTCCAA ACACTAGCCC TAGCTCAATT TCACCAACTT ATCCTCCAAG TGGTCGAAGC TCAAACCCAT
TAATCTCAGG TCCACCAATT TATCCTCCAA GTGGAAGTTC GAATCCATCA ATCTCGAGTC CACCAACATA TCCTCAAGGT GTAAGCACAA ATCCCTTGGT CTCGAATTCG CCTACTTATC
CTCAAAGTGC AAGTCCAAGC CCCTCCATCT CGACTCCACC AACTTATGCT CCGAGTGCAA GTCCAAGCTC TTCCATCTCG ACTCCACCAA TTTATGCTCC GAGTACAAGT CCATCTAGTT
CAATCTCTAC ACCACCCATT TATCCTCCTA GCCCAAGTCC AAGTCTATCG ATCAATAGCC CACCAGGTAG CCCCACCCCA AGTCCATCTA GTTCGATCTC AATCCCACCC ACTTATCCTC
CCAGCCTAAG CCCAAGCCCA AGTAGTGCTC CTTCGTCAGG GCTTAGTGTC GGCTACTACA AGCATACATG CTCTGGAGCG GAGACTATTG TGAGGGAGGT TGTGACGAAT GCCATAGACA
GCAATCGTGG CACGGGCGCG GGGCTCATTC GTTTGTTCTT CCATGACTGC TTCGTTCAGG TAATTACCAT TGCGGCTGAT CGATCTTCTC TTCACCTTCA ATGGGGGCTA ACTATCAGTT
AATGGCTCGG GTACCATACC AAATGATACG AATATGCTGC ATGAATAATG CATGTACTGA TTTGACGGTC ATTCAGGGGT GCGACGCTTC TGTTCTCCTG AACACGACCG GCTCCAGCGA
GCCGACGGAG AGAGCCAGCG CACCCAACCT GAGCCTGCGC GGCTTCGATG TGATCGACGC GGCCAAGGCG GCGCTCGAGG CTGCCTGCCC CGGCGTCGTC TCGTGCGCGG ACATCGTCGC
CTTCGCCGGC CGCGACGCCA CCTGCATCCT CAGCGGCAGC GCGGTCAGCT TCGACATGCC GGCCGGCCGC CACGACGGCC GCGTGTCCCT CGACAGCGAG GCCGTCGCCA ACCTGCCGCC
GCCGTTCGCC AGCCTCGAGA GGCTCGAGGA GATGTTCGCC GCCAAGGGGC TCGACGTCGA GGACATGGTG ACGCTCTCCG GCGCCCACAC CGTCGGCCGC TCCCACTGCT CCTCCTTCTC
CGACCGCCTC CCGCCCCACG TCTCGGACAT GAACGACACG CTCTCCGGCA CGCTGGCCAC GCAGTGCAAC AGCGGCGGCG GCGGCGACAC CACGGTGCCG CAGGACTCGG TGACCCCCGG
CGGCCTGGAC AGCCAGTACT ACAGGAACGT GCTCAACCAC GAGGTGCTCT TCGCGTCGGA CGCCGCGCTG CTGGCGTCGG ACCAGACGGC GGACATGGTG TCCGCCAACG CGTTCACGCC
GGGGCTGTGG GAGACCAAGT TTAAGGCGGC GATGGTGAAG ATGGGCCGCG TCGGAATCAA GACCAGCACC GACGGTGAGA TCAGAGACAA GTGCTGGATG GTCAACTAA
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Retrieve as FASTA
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CDS►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGCGCCGC CGCCGGAGCT TGCCGTTGTC GTTCCAACAA TGACCCTGCT AGTGCTAGCG CTGCTGGGGG CGGCCGTGGC GGGCAAGATC AGTTATGCTC CGAGCACAAG CCCACCCGCT
ACTACTCCTA CTAGCCCAAA CCAAAGTCCA CCAACATATC ATGCCCCAAG CCAGATCCCG TCGTCGACCT CAATAACTCC ACCTAGCCCA AGCCCTAAAC TAAGCCTATT ATTACCCACT
AATTCTCAAC CTATCCCAAG TCCAATCTCC TATCCACCAA GCCAAAGTCC ATCAATCTCA AATCCACCAG CTAATTCTCA ACCTATTCCA AACACTAGCC CTAGCTCAAT TTCACCAACT
TATCCTCCAA GTGGTCGAAG CTCAAACCCA TTAATCTCAG GTCCACCAAT TTATCCTCCA AGTGGAAGTT CGAATCCATC AATCTCGAGT CCACCAACAT ATCCTCAAGG TGTAAGCACA
AATCCCTTGG TCTCGAATTC GCCTACTTAT CCTCAAAGTG CAAGTCCAAG CCCCTCCATC TCGACTCCAC CAACTTATGC TCCGAGTGCA AGTCCAAGCT CTTCCATCTC GACTCCACCA
ATTTATGCTC CGAGTACAAG TCCATCTAGT TCAATCTCTA CACCACCCAT TTATCCTCCT AGCCCAAGTC CAAGTCTATC GATCAATAGC CCACCAGGTA GCCCCACCCC AAGTCCATCT
AGTTCGATCT CAATCCCACC CACTTATCCT CCCAGCCTAA GCCCAAGCCC AAGTAGTGCT CCTTCGTCAG GGCTTAGTGT CGGCTACTAC AAGCATACAT GCTCTGGAGC GGAGACTATT
GTGAGGGAGG TTGTGACGAA TGCCATAGAC AGCAATCGTG GCACGGGCGC GGGGCTCATT CGTTTGTTCT TCCATGACTG CTTCGTTCAG GGGTGCGACG CTTCTGTTCT CCTGAACACG
ACCGGCTCCA GCGAGCCGAC GGAGAGAGCC AGCGCACCCA ACCTGAGCCT GCGCGGCTTC GATGTGATCG ACGCGGCCAA GGCGGCGCTC GAGGCTGCCT GCCCCGGCGT CGTCTCGTGC
GCGGACATCG TCGCCTTCGC CGGCCGCGAC GCCACCTGCA TCCTCAGCGG CAGCGCGGTC AGCTTCGACA TGCCGGCCGG CCGCCACGAC GGCCGCGTGT CCCTCGACAG CGAGGCCGTC
GCCAACCTGC CGCCGCCGTT CGCCAGCCTC GAGAGGCTCG AGGAGATGTT CGCCGCCAAG GGGCTCGACG TCGAGGACAT GGTGACGCTC TCCGGCGCCC ACACCGTCGG CCGCTCCCAC
TGCTCCTCCT TCTCCGACCG CCTCCCGCCC CACGTCTCGG ACATGAACGA CACGCTCTCC GGCACGCTGG CCACGCAGTG CAACAGCGGC GGCGGCGGCG ACACCACGGT GCCGCAGGAC
TCGGTGACCC CCGGCGGCCT GGACAGCCAG TACTACAGGA ACGTGCTCAA CCACGAGGTG CTCTTCGCGT CGGACGCCGC GCTGCTGGCG TCGGACCAGA CGGCGGACAT GGTGTCCGCC
AACGCGTTCA CGCCGGGGCT GTGGGAGACC AAGTTTAAGG CGGCGATGGT GAAGATGGGC CGCGTCGGAA TCAAGACCAG CACCGACGGT GAGATCAGAG ACAAGTGCTG GATGGTCAAC
TAA
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Retrieve as FASTA
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