Entry information : CroPrx03-1B_Other(prx2)
Entry ID 6488
Creation 2009-01-19 (Cyril Jourda)
Last sequence changes 2011-04-28 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2020-04-15 (Christophe Dunand)
Peroxidase information: CroPrx03-1B_Other(prx2)
Name CroPrx03-1B_Other(prx2)
Class Class III peroxidase    [Orthogroup: Prx006]
Taxonomy Eukaryota Viridiplantae Streptophyta Apocynaceae Catharanthus
Organism Catharanthus roseus    [TaxId: 4058 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CroPrx03-1B_Other
start..stop
S start..stop
CroPrx03-1B 729 0 1..360 1..360
CroPrx03-1A_other 680 0 23..360 28..365
CroPrx03-1A 677 0 23..360 28..365
CroPrx01 576 0 24..360 22..363
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 179..436 258 N° 2 2674..2868 195 N° 3 4456..5085 630  
join(179..436,2674..2868,4456..5085)


exon

Literature and cross-references CroPrx03-1B_Other(prx2)
Literature REFERENCE 1. Amorim,M.I., Figueiredo,R., Carqueijeiro,I., Duarte,P., Henriques,G., Rocha,A., Hilliou,F. and Sottomayor,M. A class III peroxidase gene with alternative splicing in the medicinal plant Catharanthus roseus (L.) G. Don. Unpublished

REFERENCE 2 Murata,J., Bienzle,D., Brandle,J.E., Sensen,C.W. and De Luca,V. Expressed sequence tags from Madagascar periwinkle (Catharanthus roseus) FEBS Lett. 580 (18), 4501-4507 (2006).
Protein ref. GenPept:   CAP72489
DNA ref. GenBank:   AM937226 (179..5085)
EST ref. GenBank:   EG560315.1 [5' end]
Protein sequence: CroPrx03-1B_Other(prx2)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   360 (329)
PWM (Da):   %s   39370.76 (36011.0)  
PI (pH):   %s   5.9 (5.69) Peptide Signal:   %s   cut: 32 range:32-360
Sequence 401
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MALIAFSSSTSLLLICSLLLVSTHFNFHIEAQTTPPIVSGLSFAFYNSTCPDLESIIRNRLREVFQNDIEQAAGLLRLHFHDCFVQGCDGSVLLVGSASGPGEQDAPPNLSLRQEAFRIINDLRRRVHSRCGRIVSCSDILALAARDSVVLSGGPEYDVPLGRRDGLNFATQNETLNNLPPPSSNTSELLTSLATKNFNATDVVALSGGHTIGVGHCVSFEERLYPTQDPTMDQTFARNLRLTCPALNTTNTTVLDIRSPNRFDNRYYVDLMNRQGLFTSDQDLYTDRRTRGIVTDFAVNQTLFFEKFVYAMIKMGQLNVLTGNQGEIRANCSVRNAASGRSSSLVSVVEDAAEVGLSMF

Retrieve as FASTA  
Remarks Complete sequence from genomic (introns 1 and 2) and ESTs. Alternative splicing is confirmed with ESTs.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGGCTTTGATTGCCTTTTCTTCTTCAACTTCTCTGCTCCTCATCTGCTCTCTTCTATTGGTTTCTACCCATTTTAATTTCCATATTGAAGCTCAAACTACTCCACCTATAGTGAGTGGAC
TTTCATTTGCCTTTTATAATTCTACGTGCCCCGACTTGGAATCCATTATCAGAAACCGCCTCAGAGAGGTATTCCAAAATGATATTGAACAGGCTGCTGGCTTGCTTCGCCTTCATTTTC
ATGATTGCTTTGTCCAG
GTAATACATATACCACTTTAATTTTTTCTTCTTTTTTCTACAAGAAACTGTAGTTGCGGTAGGATTGGTGTCCACTCTGGTAAATTTCTTCTGGTGCAAGAAT
TTATTAATTATACCAGAAAGTAAGTTGTAATAAATTACGTGGGTACAACAAGAAATATTTGAATCCTAGTTCTGGATAAAAAATTTTACTCCATTCACTATTAAAACAAAGTCTGATAAT
TGTATTATTATAATTTGGAAGTAACTGTAGTCATTATTTAAAAGTATCTATAGGTAATTTATTTTCATCTCCTGTAATAAATTTTAAATTATAAGTCACTGTTACTAGTATATTTGTGTT
TGTGGATACACTATTTAACATCCACAAACACAAATATCAAATACGGTAATGCATCGAAGTAACATTAAATATCCAAGAAACTTTAAATATACAACAATCGAACCTAACTATAACTATAAC
AGAGGATGGTGATCGTCCTCACCGCTTGATTGGCCCCCCTCCGCGCTACTCTGACTGTTCGGCCAACTAATCCCACCAGGTATCTGCCAATGGGGAAGCAATTCAAAAGATGGTAGATCG
CTTATTAATATGCGTACCTTAGTGAAGTATCCAGCCCTAAACCCGTCACTGAGGTAATTCCCTTAAGCAATTCTCCACTAGATTTTGCTCAGACGGTCACTCCCTTCGCAAAGACCCTCT
AAATCATGATTTCCACTATAATTACTACGTTAGAACAAACAAAATATATATTTAAAAGTGTTTTGTGACAAATAAACTAGTTTACTCGAAAATAATTTATATAATTATGCTTTATAACAC
TCCCTCCCCTACCCCCGCCCCCCACGCGGAACCATGAAACGCATGCTACATATATGAAGAAGAAAAAGATTAAAAGTAATGAGCAGTAGGGCCACCAGGAGGTTCCTTGTAATATCAAGA
CATTGAATTATGAAATTATGATTATGTAATTAATTAACTCTGTCAATTCAGTCGTCGTCAACCTAAAACCTCCTCATTATAAATACCTTCCATTTTGTTCCTTCCCTCCTTCACAATATC
GATCCATCTAGCTGGCTGGAAGGAACGAGCCATGGTTTTTATGAGTTCCTTTTCCTCTTCTTCATCTTCAACTTCTCTGCTGCTCTTTCTCATTTCCTCTCTTTTGATTTCTACCCACTT
TAATGTCCATATCGAAGCTCAAACAACTCCACCTATAGTGAGTGGACTTTCATTCACCTTTTATGATTCTAGTTGCCCAGACCTGGAATCCATTATCAGAAACCGCCTCAGGCGGGTCTT
CAGAAACGATATTGGACAAGCTGCTGGCTTGCTTCGCCTTCATTTTCATGATTGCTTTGTCCAGGTAACACCACTTTGATCAACTCCATTCACTCAGGCTGAACTTCGATAGCTTTTATT
TTGTAAGGAAGGGTCTTGAATTTTTTGAGAGGTGAATTGTTTGTGACTCTCATATCCACACTCATCAAACATGTGAGCTCTATTGAGGCATATCACCACTAATGTGGCTTATATCTCCCA
TTGCGAAGACAACAACTATAAGACAACTATAAGAGTTATGTAACCTAATACAAATCACATGATCTATAAATAGGAATATAAGTCGGATTCATTATAGAATTCGTCTGTTTTCGCAAGTTT
AGGTCCAAAGTAAAAAATTGAAAAGTTTTGATTTTAATAAGTTGATAAAGTTGAGCTTAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTGAGTGAAGAAATTGTAGG
CCCTGTTGGTAAGATGGTGTCCACTAAATAAATCTCATTTGTTTCCGTGCCATAGAAATGATAGGAGATAGAAATTATAATAAGTAAGTTCTATTTGTCAAATGTAATATTTGAATCCTA
GTAAACAAATTGAAAAAATCTTACTCTATTCACTGCTAAAATAACTATGGACGACTAGTACAAAAGTTTGATAATTATAGTATTATATTCTTGAAGGAACTTTAGCTCTTGTCTGAAGAT
GTTTACGGGTTAAATACTATCTCAATTGTACAAAAATTTGTAAACTACGAGTCAGTCTCATCAGTAAATCACATCTCTTGCAATATTATGTAAATCTTACATGTTAGAAAAAAGGCTTGA
AACTTATTGGTAAGATTAAAGATTCACTAGATTATCTAACTCACTCTTGTCTACTATGAGATGACTTATATTTGATGGTTATTGTTATACGTAGGGATGCGATGGATCAGTCCTGTTAGT
GGGATCAGCAAGCGGACCTGGAGAGCAGGATGCGCCACCAAACTTGAGTCTCCGACAGGAGGCTTTCAGGATCATCAATGACCTCCGAAGGCGCGTGCATAGTAGATGTGGGAGAATTGT
TTCTTGTTCCGATATACTTGCTCTCGCTGCACGCGACTCTGTTGTTCTG
GTAAGTTTTTACTATCTCCATTTTATGTTATACGTCGTCACTCGAGTGTATTCTTTCTATCTCAAAGTATA
TATTATTTTCATTAGAACAATTAATGTCTGTCAAGAGAAAATTTAGTCTATTTCCTTTTTAATCTAGATAATTTAATAATTTACTTAATTCATGTGACATATCTTATATGTGATAGATAA
TATGAAACGAAGATAGTAATAGTATATATAGGTGAAAATACTATTGTCATTCATCGGCAAAAAGCTCAACCAATTAGTATAAAAGGGGGAGAAATCCGCACACATCATAGTACTTTATAT
GAAAAATACTTGTTCGTAAAATTTAATCGTAAATTTTATTTTCTCATTCTTTTTTCATACAGTAGATAAGAGGTGCAGTTCAAATTCAGAACTTATACAATGATGAATAATACTTTTTGA
ACTACTACATTGTCACTTTTAGTCCTAATTCGTGCATAATTGGACAGTGAAGCCGTCGATAGAAGAGTAAAGTATTTTTGCTTTCTATACTAAGGATGAATTTTCCAAAAAAAAAAAAAA
AGAAAAAGGATGAATTATGGCCTTAAATTGTGTGTAGGTTATTTGTTCAATCATTGTCCAACAATCGCATAAGAGTTTGGGTACACTTGGATTAGATTTTATTTTAAAAGTAGGATAGAT
TTTTTTTCTTAGCTTTCCTGAAAGATAAAATTTTTTGTAAGATAAGAGATGAAGTCCAAAGTTAGAAATTAAAGATTTATTTAAATTATTTTTTAATTCTTAACATTTTTTATTTTAATC
ATGATAAAAAAATCATTTTTCTTTTTGGAAAAACAGAATCCAAACACACTCTAATTAAAGAATTCGCATATAGAAACAAAAGCTAAAAATTCATGAGTTTATCTAGGAAAACTCTAAAAT
ATTTTTTTAAAATAAAAAATACAAACATGTAAAGTTTGGGAAATATATGAGGCAGAATAGACAGACATCAAACAACTTTGGTAGATGGACGAAGATATATAAGTCTTATTTTTCCTTAAT
AAATGTACGAGTTGGTGTTGGTTGAAATTGAACTGTTAAAGTGTCTTTTTCGTGTGTGTAATCCAATCTTAGATCAGTTTATGGATTATAATACTGGCCACCTATATGTAGTTAGTGAAG
AGGAAGCAGACCAATAAATACATGGAGGTGTTACATAATTCGAAGGTCAAGCGCCATGTTTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATT
ATTATTATTTTGGTAAATCATGGTCTATTTGGAGTGTTATTCATTTCATAAAATTTTTTATCCTTTTTTCTTTATTTTCTCTTGCAAAAGTCAAATATAAACTTAAGGAATAATTCACTC
TTCTCAACTTTGTTACCATACAAGGTGGAGTAATTTTTTATGCCAGGTATATAAAGAAATTTTTAAAAATATTGAGAGCCAAAAATTAAAAAAAGAAGTTATAATTATAAGCGAATTATA
TATATATATATATATGATGTAGTTATTATAATTGTGAAATGTGATATTAATAAGTAGAATTGTGCAAATAATGCAGTCAGGAGGTCCCGAATACGATGTTCCTTTGGGAAGAAGAGATGG
ACTTAACTTTGCAACACAAAATGAGACACTAAATAACCTTCCACCTCCATCAAGCAACACAAGTGAGCTCCTTACTTCACTTGCCACCAAAAATTTCAATGCCACAGATGTTGTAGCTCT
TTCAGGTGGCCACACAATTGGTGTAGGCCATTGCGTTTCCTTTGAAGAAAGACTCTATCCAACTCAAGATCCAACAATGGACCAAACATTTGCAAGAAACCTAAGACTCACTTGTCCAGC
ATTAAATACAACAAACACAACTGTTTTGGACATTCGATCACCAAACAGATTTGATAATAGGTACTATGTTGATCTAATGAACCGACAAGGACTTTTCACTTCGGACCAAGATTTGTACAC
TGATCGAAGAACAAGAGGTATTGTTACTGATTTTGCTGTTAATCAAACCTTATTCTTTGAGAAGTTTGTTTACGCAATGATAAAGATGGGACAATTGAATGTCTTGACGGGGAATCAAGG
TGAAATCAGAGCCAATTGTTCAGTTCGGAATGCCGCCAGCGGACGTTCTTCCAGCTTGGTATCGGTTGTGGAAGATGCTGCAGAAGTTGGCTTGTCCATGTTTTAA

Retrieve as FASTA