Entry information : Ccin2CysPrx
Entry ID 6520
Creation 2009-01-24 (Christophe Dunand)
Last sequence changes 2009-01-24 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2010-08-13 (Marie Brette (Scipio))
Peroxidase information: Ccin2CysPrx
Name Ccin2CysPrx
Class Typical 2-Cysteine peroxiredoxin    [Orthogroup: 2CysPrx001]
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Psathyrellaceae Coprinopsis
Organism Coprinopsis cinerea (Coprinus cinereus)    [TaxId: 5346 ]
Cellular localisation N/D
Tissue type Sporocarp (fruiting body)
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value Ccin2CysPrx
start..stop
S start..stop
Lbi2CysPrx 355 8.03e-127 1..211 1..219
Pc2CysPrx01-1 352 2.23e-125 1..211 1..211
Ppl2CysPrx01-1B 350 5.97e-125 1..211 1..210
Ppl2CysPrx01-1A 350 1.14e-124 1..211 1..210
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '6520' 'join(628523..628623,628689..628712,628772..628795,628846..628907,628962..629160,629229..629307,629372..629518)' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 628523..628623 99 N° 2 628689..628712 22 N° 3 628772..628795 22 N° 4 628846..628907 60
N° 5 628962..629160 197 N° 6 629229..629307 77 N° 7 629372..629518 145  
join(628523..628623,628689..628712,628772..628795,628846..628907,628962..629160, 629229..629307,629372..629518)


exon

Literature and cross-references Ccin2CysPrx
Literature Birren et al., Annotation of the Coprinopsis cinerea genome
DNA ref. JGI genome:   Chr_13 (628523..629515)
mRNA ref. GenBank:   XM_001838234 [Incorrect splicing]
EST ref. GenBank:   DN593040 [3' end]
Protein sequence: Ccin2CysPrx
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   211 (302)
PWM (Da):   %s   23399.15 (33220.0)  
PI (pH):   %s   5.11 (10.36) Peptide Signal:   %s   cut: 27 range:27-328
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MPAIVQRPAPTFKAEAVTEGLFNEVSLQDYQGKWVVLFFYPMDFTFVCPTEILAFNDALPQFQELNTVVGVSTDSKFSHFAWATQPRKEGGLGPDLKLPLIADRNMKISRDYGVLLEDEGIALRGLFIIDPKGILRQITVNDLPVGRSVDETI
RLIKAFQF
EKYGEVCPANWTEGSKTIKTDPVAKLEYFGAANGEVNGEGPKKRPRTE*

Retrieve as FASTA  
Remarks Complete sequence from genomic (6 introns) and 1 EST. Strain="okayama7#130".
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCCCGCTATCGTTCAACGCCCTGCTCCCACTTTCAAGGCTGAGGCCGTCACTGAGGGTCTCTTCAACGAGGTCTCTCTCCAGGACTACCAAGGAAAATGTGGTACGTCACGATATTAA
ACCACAAGTGCGGGGGAACTGACTAGATTTTGCTCGTTTTTCTTACAGGGTTGTTCTCTTCTTCTACCCTATATGTGAGTTCTCAATATCCTTTGACTCCGTAAACGCGTCGTCGCTGAC
CACAATGCTTCAGGGATTTCACCTTCGTCTGCCCCACACGTATGTCCCACTCGAATGAAAAAACGCCAGCGACCTAACAAGTATCCCAGCGAAATCCTTGCTTTCAATGACGCTCTTCCC
CAGTTCCAAGAATTGAACACCGTTGTTCTCG
CGGTACGGCTCTTCGTCGGGTGGCATGTGACATCCATGCTTAACGGCGGCTTTCAGGTGTCTCGACCGACTCCAAGTTCTCCCACTTCG
CCTGGGCCACCCAGCCTCGCAAGGAAGGTGGTCTCGGCCCCGACCTCAAGCTCCCTCTCATTGCCGACCGAAACATGAAGATCTCTCGCGACTATGGTGTCCTCCTTGAGGACGAGGGTA
TCGCCCTCCGTGGTTTGTTCATCATTGATCCGAAGGGTATCTTGAG
AGGTTCGTTGCTCGGTGTCCATCAAGAAGCATAAACGTTTGCTCATTGCACTATGTTCATATCCATTTAGGCAA
ATCACTGTTAATGATCTTCCTGTCGGCCGCTCTGTCGACGAGACCATCCGCCTCATCAAGGCTTTCCAATTCACT
CTGTTAGTTCCCATCCCCTTTGTCCCTCGTCGATATGTCATTGAC
TTATCGCCTCTGCTCTAACAGGAGAAGTACGGCGAAGTGTGCCCCGCCAACTGGACCGAAGGCTCCAAGACCATCAAGACTGACCCTGTTGCTAAGTTGGAATACTTTGGTGCTGCCAAT
GGTGAAGTCAACGGTGAAGGCCCCAAGAAGCGCCCCCGCACCGAGTAA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCCCGCTATCGTTCAACGCCCTGCTCCCACTTTCAAGGCTGAGGCCGTCACTGAGGGTCTCTTCAACGAGGTCTCTCTCCAGGACTACCAAGGAAAATGGGTTGTTCTCTTCTTCTAC
CCTAT
GGATTTCACCTTCGTCTGCCCCACCGAAATCCTTGCTTTCAATGACGCTCTTCCCCAGTTCCAAGAATTGAACACCGTTGTTCTCGGTGTCTCGACCGACTCCAAGTTCTCCCAC
TTCGCCTGGGCCACCCAGCCTCGCAAGGAAGGTGGTCTCGGCCCCGACCTCAAGCTCCCTCTCATTGCCGACCGAAACATGAAGATCTCTCGCGACTATGGTGTCCTCCTTGAGGACGAG
GGTATCGCCCTCCGTGGTTTGTTCATCATTGATCCGAAGGGTATCTTGAG
GCAAATCACTGTTAATGATCTTCCTGTCGGCCGCTCTGTCGACGAGACCATCCGCCTCATCAAGGCTTTC
CAATTCACT
GAGAAGTACGGCGAAGTGTGCCCCGCCAACTGGACCGAAGGCTCCAAGACCATCAAGACTGACCCTGTTGCTAAGTTGGAATACTTTGGTGCTGCCAATGGTGAAGTCAAC
GGTGAAGGCCCCAAGAAGCGCCCCCGCACCGAGTAA

Retrieve as FASTA