Sequence Properties
first value : protein
second value (mature protein) |
Length (aa):  |
341 |
| PWM (Da): |
37579.17 |
Transmb domain: |
i23-45o |
| PI (pH): |
7.84 |
|
Sequence
Send to BLAST
Send to Peroxiscan
|
| *.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
MEKLKLQIYS IQTLCLRKKK YKFSLLIFLC SIIFFSKTSC STLSFNFYGL SCPSAELMVK NTVRSASSMD PTIPGKLLRL LFHDCFVEGC DASILLEGNG TERSDPANKS LGGFSVIENA
KRVLEIFCPF TVSCADIVAL AARDAVEFAG GPNVQIPTGR KDGRISLITN VRPNIVDTSF TMDQMINIFT IKGLSLDDLV ILSGAHTIGS AHCNAFSDRF RVDTNGNFTL IDPSLDKAYA
IELTKQCPAG AATSTITVKN DPQTPQLFDN QYFKDLIQHK GLFQSDSVLF NDVRTKKRVV EFANDQDGFF RSWSQSFVRL SVLGVKSGED GEVRTSCSVI N*
|
Retrieve as FASTA
|
|
| Remarks |
Complete sequence from genomic (chromo 12, 3 introns) and 4 ESTs. Incorrect prediction from Phytozome (two 3' end possible: in frame with the exon 4: SGEDGEVRTSCSVIN* and with an extra intron and a small last exon SGEDEEVRTSCSVIN*). The first prediction more probable but no EST to confirmed. |
DNA ►
Send to BLAST
|
| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
TGGAGAAACT CAAACTACAA ATATATTCAA TCCAAACACT ATGTTTACGC AAAAAAAAAT ATAAATTTTC GTTACTTATT TTCTTGTGTT CGATAATATT TTTTTCGAAA ACATCATGTT
CAACTCTTTC ATTTAATTTT TATGGATTAT CTTGTCCCTC AGCTGAATTA ATGGTGAAAA ATACAGTAAG ATCAGCTTCT TCTATGGATC CAACTATACC TGGGAAATTG CTTCGTCTTC
TTTTTCACGA TTGCTTTGTT GAGGTAATAT TTCTAGTAAT TATCTATTTA ATTTTTATGC ATTACGCTTG TATAAAAGAA ATTTGGATTA ACTACTTTGC ATGCAATTAC GTAACTAGTA
GTGTATATTC TCACTTCAAT TTACACTCTA CTGTAGTTAA TTTTATCGAT TTGATGTGAA CACTGAATAA AGTTTAATTC AAATAAATTT AATAAAGTTC TTAAATTCTT CCTCAAATAA
TACTTCTGAT CTTAATTTAC ATGACATCAT CTGATCAAGC ATGAAGTTTT ATAAATAAAA TAAATACTTA ATTGTGATCT AGAAATATTG TATTATTATA AATTATCTCA TTTAAGCAAT
TAAGTAGTTT TCAATATAAA TAAGTGACAT TAATCACTTC TAAGAAAATA AAAAGAAAAA AAAAACATGT CATAAATTAA GGCAAATGAC GTAATATTTT ATCATATGAA AGATTGATTA
ATTTTTTTCT GAATAATAGG CCCTCCTGTC TATCCTTGTC CATTTAAGTA CCAAACTATA TTTTTGTGTT GATTAGGATT AAAAACTCGT AACTTGCATC TAACTTACAC ATCTGATATC
ATACATTGCG CTCTTATTAC TAGATCAAAA ATCCCCTGAG GCTAAAATAT TGAGGAGGAT TATAATATTT TTAAAATTTT TTTTTAGGGT TGTGATGCAT CTATATTATT AGAAGGAAAT
GGAACAGAAA GAAGTGATCC AGCAAACAAA TCACTTGGAG GATTTTCAGT AATAGAAAAT GCCAAAAGGG TTTTGGAAAT ATTTTGTCCT TTTACGGTTT CTTGTGCTGA TATTGTTGCT
TTGGCGGCTA GAGATGCTGT TGAATTTGTA TGTTTTTCTA AAACTTATTT GTTACTCAAC CGTCATTAAT AAGGATTAGC GATGAAGTAA TTTTTATTGT TTAGCAATAT AAGTTATCCA
TTGTTGATTT CTATTTTTTT ATAGTGTGTT TTTGTTTGTT TAATTAATGT ATGTTAATTT TATGTGACAT GTTTAATTTG TGATTAAAAA ATTATTTAGT TCGTCGCTTA TAAATATTTG
ATGTTTAAAT GGAGAAGGAT ATATAAAAAA AGTTCATTAT TCATCGAGTT TTGACTAGTA TACATTTAGT TAATCTTCAA AAATTTAGAT CAAGATTGAG AAAAAAAAAA CTATTGTACT
TATCGTTACT ACCTTTTTAA TACGTATTTT TGTTTGAAAA CATAGAGAAC TTCCTGTATT AGAGAAAATT AAATGTTTTC ATATGTTTGA TCGATTCTTA TTACTATTCA AGATTGACTT
GTTGAAAATG TTTTTGATGT TTCGATGGAA ATGTTTGTTC AAAATTCTTT GATAGTAAAT TTGTTTGAGA CTGAAACGTT AATTGTTGTT ATTTTGATGA TTATAAAAAC AGGCAGGAGG
GCCAAATGTT CAAATTCCAA CAGGAAGAAA AGATGGAAGA ATTAGTTTGA TAACAAATGT GAGACCAAAC ATAGTGGACA CAAGTTTCAC AATGGATCAA ATGATTAATA TTTTTACTAT
AAAGGGACTT TCTTTAGATG ATCTTGTTAT CCTATCAGGT ACATGCATTA TATTATTTAA TTAAGCAATT TATTTTTCAT TGATCTTTAA TTTTTATCCT AAAAATCGAA TTTCTAAAAG
GTGCCAATAA TTTCTAAGGT GAGAAGACAA AGTCATAATG TATTTAATAT TAGGGTCACA AAAACTTTAT GAGTAGATAG TACTAAAATT TAAGTAGGGT TACAAGAATT TAAAGTCATT
TATTTCTCAT ATTTGATAAT AACTATGACT CAATTCCATA TAAACTATAA TATTAGATTT AAACGTTTAA TATACAATAA AATTACTCAA TTTAGCGATA AATTTGATTC TCTTCCCATA
AAATAATGTT TAGATATGTA AAAAGGAGAT CGAGTTACAC GTGTTCTTAA TCTTAAATGT AAAGATATAG GGATCCATAT ATATACACAT AATATATTTG TTTAGATAGG CCTCAATGAC
CCCTTTCTCA TTTTGAAAAA CTTATGTAAT CCTATTCTAA CCCGATTCGA TATGGAATGA ACTTATAATC ATATACTATC GATTTCATTT CACTTAAGAC GTGAAATTAC AATCTTTTTT
ATTTTATTTC GTCATGTTTC CATAAGAATT TATATAGCAT GTGAGAAATA TTGAAAATTA ATTAGCAATA TTTTTTATTA TTGTTTCTTA TACTTCAATT ATCTTTTGCT ATTTAATATG
TTGCTACTTT TCTTTCTTCC ATACTTCCAC CATTATACTG TTTTTCTATA GCATTCTTCT GATTTTTTTT TAAAAAAAAT CGAGAATCAA TAAAAAAACA TTCACTATAC CTCCAGAAAG
GTAGGTTTAT TATATATTTA TGAAAAATAG TTTTTGATCG GTCTATATAT ATAAACATAA CATAATTTTT TAACGAGAAA TATTTGATTG ACCATTCTGG ACTATATATG ACTTACATCA
CTGGGTGTAA CTACGTAAGA TCTTCATACA GTACTACTCC TTCCCTAAAT TTCACTTGTG CGATTACATT GCGTATATGA CGTTACTAAT ACTTTTGTTG TATGCCAAAA AATTGTAGGT
GCACACACAA TAGGATCAGC ACATTGCAAT GCATTTAGTG ATCGTTTTAG AGTGGACACA AATGGCAATT TCACTCTAAT TGACCCTTCA TTAGACAAAG CATATGCAAT AGAGTTAACA
AAACAATGTC CAGCAGGGGC AGCAACTTCA ACAATTACAG TAAAAAATGA TCCTCAAACA CCTCAACTTT TTGACAATCA ATATTTCAAA GATTTAATAC AACACAAGGG GCTTTTTCAA
TCCGATTCTG TTTTATTTAA CGACGTACGT ACAAAGAAAA GAGTCGTTGA GTTTGCGAAT GATCAAGACG GATTTTTCAG GAGTTGGAGT CAATCTTTCG TGAGACTTTC TGTGCTCGGA
GTGAAGTCCG GAGAGGATGG AGAGGTTAGA ACTTCTTGTT CGGTTATAAA TTAA
|
Retrieve as FASTA
|
|
CDS►
Send to BLAST
|
| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGAGAAAC TCAAACTACA AATATATTCA ATCCAAACAC TATGTTTACG CAAAAAAAAA TATAAATTTT CGTTACTTAT TTTCTTGTGT TCGATAATAT TTTTTTCGAA AACATCATGT
TCAACTCTTT CATTTAATTT TTATGGATTA TCTTGTCCCT CAGCTGAATT AATGGTGAAA AATACAGTAA GATCAGCTTC TTCTATGGAT CCAACTATAC CTGGGAAATT GCTTCGTCTT
CTTTTTCACG ATTGCTTTGT TGAGGGTTGT GATGCATCTA TATTATTAGA AGGAAATGGA ACAGAAAGAA GTGATCCAGC AAACAAATCA CTTGGAGGAT TTTCAGTAAT AGAAAATGCC
AAAAGGGTTT TGGAAATATT TTGTCCTTTT ACGGTTTCTT GTGCTGATAT TGTTGCTTTG GCGGCTAGAG ATGCTGTTGA ATTTGCAGGA GGGCCAAATG TTCAAATTCC AACAGGAAGA
AAAGATGGAA GAATTAGTTT GATAACAAAT GTGAGACCAA ACATAGTGGA CACAAGTTTC ACAATGGATC AAATGATTAA TATTTTTACT ATAAAGGGAC TTTCTTTAGA TGATCTTGTT
ATCCTATCAG GTGCACACAC AATAGGATCA GCACATTGCA ATGCATTTAG TGATCGTTTT AGAGTGGACA CAAATGGCAA TTTCACTCTA ATTGACCCTT CATTAGACAA AGCATATGCA
ATAGAGTTAA CAAAACAATG TCCAGCAGGG GCAGCAACTT CAACAATTAC AGTAAAAAAT GATCCTCAAA CACCTCAACT TTTTGACAAT CAATATTTCA AAGATTTAAT ACAACACAAG
GGGCTTTTTC AATCCGATTC TGTTTTATTT AACGACGTAC GTACAAAGAA AAGAGTCGTT GAGTTTGCGA ATGATCAAGA CGGATTTTTC AGGAGTTGGA GTCAATCTTT CGTGAGACTT
TCTGTGCTCG GAGTGAAGTC CGGAGAGGAT GGAGAGGTTA GAACTTCTTG TTCGGTTATA AATTAA
|
Retrieve as FASTA
|
|
