Entry information : UmAhpD
Entry ID 6618
Creation 2009-03-06 (Christophe Dunand)
Last sequence changes 2009-03-06 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-04-03 (Catherine Mathe (Scipio))
Peroxidase information: UmAhpD
Name UmAhpD
Class Alkylhydroperoxidase D    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Fungi Basidiomycota Ustilaginomycetes Ustilaginaceae Ustilago
Organism Ustilago maydis    [TaxId: 5270 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value UmAhpD
start..stop
S start..stop
BdCMDn 125 6e-38 36..152 7..123
SavHCMDn02 118 3e-32 36..152 309..425
AauCMDn 110 5e-32 35..159 23..147
ScoHCMDn02 117 6e-32 36..152 327..443
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 12558..13070 513  
complement(join(12558..13070))


exon

Literature and cross-references UmAhpD
DNA ref. JGI genome:   contig_1_195 (13070..12558)
EST ref. GenBank:   EH018203.1
Protein sequence: UmAhpD
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   170
PWM (Da):   %s   18158.03  
PI (pH):   %s   6.11
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAAPKTDQDS GAAPAPAPAP AQARSADWVE LHRTLHSTGD EIRRQVVGEE YVNRSLANAS EFTMPMQQLA TEYAWGGIWS RPGLARRDRS ILNIGMLAAL GKSTELATHV RGALNNGVTE 
TEVQECLLQV ATYVGMPAGM EAFRAADKAV QEWKSTNANA HVAASKPEQK 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 18, no intron) and 5 ESTs.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCGCCC CCAAAACCGA TCAAGATAGT GGAGCTGCAC CTGCACCTGC ACCTGCACCT GCACAGGCCC GCTCGGCTGA CTGGGTTGAG CTGCACCGAA CGTTGCACTC GACTGGCGAT  GAGATTCGAC GTCAAGTGGT GGGAGAAGAG TATGTCAACC GCAGCTTGGC CAACGCGAGC GAGTTCACCA TGCCCATGCA GCAATTAGCA ACCGAATATG CGTGGGGCGG TATATGGTCT  CGTCCCGGAT TGGCACGACG TGATCGCAGT ATCCTCAACA TTGGCATGCT CGCCGCGCTG GGAAAGTCGA CTGAACTGGC CACCCACGTT CGAGGCGCAC TTAACAATGG CGTTACCGAG  ACCGAGGTTC AAGAATGCTT GCTTCAGGTG GCGACGTATG TGGGTATGCC AGCGGGTATG GAGGCGTTCC GAGCGGCAGA CAAGGCGGTG CAAGAATGGA AGTCTACCAA CGCCAACGCT 
CATGTCGCTG CTTCAAAGCC CGAACAGAAG TAG 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCGCCC CCAAAACCGA TCAAGATAGT GGAGCTGCAC CTGCACCTGC ACCTGCACCT GCACAGGCCC GCTCGGCTGA CTGGGTTGAG CTGCACCGAA CGTTGCACTC GACTGGCGAT  GAGATTCGAC GTCAAGTGGT GGGAGAAGAG TATGTCAACC GCAGCTTGGC CAACGCGAGC GAGTTCACCA TGCCCATGCA GCAATTAGCA ACCGAATATG CGTGGGGCGG TATATGGTCT  CGTCCCGGAT TGGCACGACG TGATCGCAGT ATCCTCAACA TTGGCATGCT CGCCGCGCTG GGAAAGTCGA CTGAACTGGC CACCCACGTT CGAGGCGCAC TTAACAATGG CGTTACCGAG  ACCGAGGTTC AAGAATGCTT GCTTCAGGTG GCGACGTATG TGGGTATGCC AGCGGGTATG GAGGCGTTCC GAGCGGCAGA CAAGGCGGTG CAAGAATGGA AGTCTACCAA CGCCAACGCT 
CATGTCGCTG CTTCAAAGCC CGAACAGAAG TAG 

Retrieve as FASTA