The peroxidases and oxidases database
Entry information : PcLDS02
Entry ID 6647
Creation 2009-03-26 (Christophe Dunand)
Last sequence changes 2011-11-24 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-03-28 (Catherine Mathe (Scipio))
Peroxidase information: PcLDS02
Name PcLDS02
Class Linoleate diol synthase (PGHS like)    [Orthogroup: LDS001]
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Corticiaceae Phanerochaete
Organism Phanerochaete chrysosporium    [TaxId: 5306 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PcLDS02
start..stop		 S start..stop
PplLDS02 949 0 1..634 8..687
JargLDS02 912 0 1..640 68..755
LbiLDS02 850 0 32..644 76..731
GluxLDS02 835 0 3..635 90..760
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 832436..832502 67 N° 2 832561..832772 212 N° 3 832832..832896 65 N° 4 832953..833169 217
N° 5 833224..833460 237 N° 6 833510..833572 63 N° 7 833624..833663 40 N° 8 833715..833919 205
N° 9 833974..834097 124 N° 10 834256..834367 112 N° 11 834426..834753 328 N° 12 834894..835158 265
join(832436..832502,832561..832772,832832..832896,832953..833169,833224..833460, 833510..833572,833624..833663,833715..833919,833974..834097,834256..834367,83442 6..834753,834894..835158)


exon

Literature and cross-references PcLDS02
Literature Martinez,D., Larrondo,L.F., Putnam,N., Sollewijn Gelpke,M.D., Huang,K., Chapman,J., Helfenbein,K.G., Ramaiya,P., Detter,J.C., Larimer,F., Coutinho,P.M., Henrissat,B., Berka,R., Cullen,D. and Rokhsar,D. Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78. Nat. Biotechnol. 22 (6), 695-700 (2004)
DNA ref. JGI genome:   scaffold_3 (832436..835158)
Protein sequence: PcLDS02
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   644
PWM (Da):   %s   72569.04  
PI (pH):   %s   5.23
Sequence 929
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MFLSKLPEGSFSTSLQNLVIEMLYNDLPHPPSTYVGKQYAWRTADGSYNNICDPDMGKAGTPYSRSVQQTHPLTRREMPDPGLIFDTLLRREFVKHPAGLSSMMFAFAALVIHTVFRTSHEDVTINETSSYVDLAPLYGCNQEAQDKIRVRDGRGLLYPDTFSEDRLMLLPPAVCVLLVLFSRNHYIARKLLEINERGTYTDPDLIPADDKDRMTKLLAQEEEIFQTARLINCAWFGSAIFSDYFSAILGLVRQGNSWSLNPFGEIRQEDHTLFERGRGNVCSVEFNCLYRWHATTSEYDEKWVEQLTAHLFGGRNPDDITPADLKQVLLKVQESEPDVTHWTFGNLKRQEDGTFKDEELAVILMTATEHPAGAFKARGTPGCMRLHEVMGIEAARRWGCCSLNDFRKIATTAERLYGDIDHLELYVGLQAEEAKPVMDGAGLCSYTVSRAILADAIALTRGDRFFTADYTPFNMTSWGFADCQRDANAPGYGSTLGRLFMRTLPNHYNADSTYTWFPLMTPDAMKTILAKLGDADIYNMARPSPEQHVTDVLEFFLASNDPATARKEQQAMLEALVGAPGAVDRITEFFYLKTREMMVSESWGSVKRTTKNVDIVRDVLKYVPLYWACEVVSAISLPLRA

Retrieve as FASTA  
Remarks Complete sequence from genomic (11 introns). No EST. Strain="RP-78".
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTTCCTGTCAAAGCTGCCCGAGGGCTCATTCTCGACATCGCTGCAGAACCTCGTTATCGAGATGCGTGAGTCCGAGCGGTCAAGTTTCTCCGGCGCATGGACGCTGACTTTGAATCTC
TCAAGTCTACAACGATCTCCCACACCCGCCAAGCACATATGTCGGGAAGCAGTACGCCTGGCGCACCGCCGATGGCTCCTACAACAACATCTGCGACCCGGACATGGGCAAGGCGGGCAC
TCCGTACTCGCGCAGCGTCCAGCAAACCCATCCGCTCACGCGCAGGGAAATGCCTGATCCGGGTCTCATCTTCGACACGCTCCTGCGCCGGGAGAAGGTGATGTTCTCACAAACACGGTC
TAGTCCGGACAAGTATTGATATATGTGCGCCTGCAGTTTGTCAAGCACCCGGCCGGCCTGTCGAGCATGATGTTTGCGTTTGCCGCGTTAGTCATACACACGTACGCAGCCCATCACGCT
CTATGTGCGCGAAATCCTTACAAACCGCGCATCACAGGGTATTCCGCACTTCTCATGAAGATGTCACTATCAACGAGACGTCGTCCTATGTCGACCTCGCGCCGCTGTACGGATGCAACC
AGGAGGCGCAGGACAAGATCCGCGTCCGGGACGGCCGCGGGCTCCTCTACCCTGATACCTTCTCCGAGGACCGACTCATGCTACTGCCGCCCGCGGTGTGCGTGCTCCTGGTACTGTTCA
GCAGGAACCACAACGTCTGTCTGCCTTCTCGTCTGACGCGCACGACCTCTGACGTGATGATTCAACAGTACATTGCGCGCAAATTGCTCGAGATCAACGAACGGGGGACGTACACAGACC
CGGATCTGATCCCGGCGGACGACAAGGACCGCATGACGAAGCTGCTTGCGCAAGAAGAGGAGATCTTCCAGACTGCACGCCTTATCAACTGCGCCTGGTTTGGTTCGGCGATCTTCTCGG
ACTACTTCAGTGCAATCCTGGGTCTGGTTCGGCAGGGAAATAGCTGGAGCTTGAATCCGTTCGGGGTGATTACCGACTGCTTCTCCTTGGGAACGAAGGCTGACAGGCTCGCAGGAAATC
CGTCAAGAGGACCACACTCTTTTTGAGCGAGGACGGGGCAACGTGTGCAGTGTTGAGGTGAGTCTCTCATGGTATTCCGCCGAGCGACGCCCTCAAATTCTCGCCCAGTTCAACTGTCTC
TACCGCTGGCACGCCACGACCTCCGAATGTGAGCCCACAGGTTTCATCCAGACGTACAGTCCCACTGACGACGTACCAGACGACGAGAAATGGGTCGAGCAGCTGACCGCGCACCTCTTC
GGCGGTCGCAATCCCGACGACATCACTCCCGCCGACCTGAAGCAGGTCCTGCTCAAGGTCCAGGAGTCCGAGCCGGACGTCACGCATTGGACATTTGGCAACTTGAAGCGCCAGGAAGAC
GGCACGTTCAAGGACGAGGAGCTTGCGGTAATCCTGATGACTGCGTGAGTCGTTGGATGCGTGCTCCATTGTTTCAGTGTATTCAAGGTGAACTGTAGGACGGAACATCCGGCTGGCGCT
TTCAAGGCCCGTGGAACACCTGGGTGTATGCGTCTCCATGAGGTGATGGGCATCGAGGCAGCGCGTCGCTGGGGTTGCTGCTCCTTGAACGACTTCAGAAAGGTAAGCATAACAAATTTC
TATAGTGCTTCTCAGTTGCTCATATAATTTGTAGTTCTTGGGACTCAAGCGTATGTCATCTGCTCAGTACCTGGATAGTGTGGCATTGAGTTGCTTTAACAGCATATGCGTCGTTCCTGG
AGTGGAACTCGGACCCAGAGATCGCTACGACAGCTGAAAGGCTTTACGGGGATATCGACCATCTTGAGCTGTACGTTGGTCTCCAAGCCGAAGAAGCCAAGCCCGTCATGGACGGTGCTG
GACTCTGCCCCTGTATGTCGAGGATATTTTCCTGCCCCCTGAATACTATGTACTCACTATGTTCACGCAGCGTACACCGTCAGCCGTGCCATCCTTGCAGACGCCATCGCACTCACGCGC
GGTGACCGCTTTTTCACCGCGGACTACACGCCGTTCAACATGACCTCGTGGGGCTTCGCGGACTGCCAGCGCGACGCGAACGCGCCGGGCTATGGCAGCACGCTCGGCCGCCTCTTCATG
CGCACGCTCCCGAACCACTACAATGCGGACAGCACGTATACGTGGTTCCCGCTCATGACGCCCGACGCCATGAAGACGATCCTCGCGAAGCTCGGCGACGCGGATATCTACAACATGGCG
CGCCCGAGCCCCGAGCAGCACGTTACCGACGTCTTGGAGTATAGGGACGTCGGTCAGGTTCTTGATAGCAAGGGCTTCGTGCCGCTGTACCACGGCAGGGCCGCGCTCGTGATCAAGGGC
AGAGGGTGAGGTTTCCTCTGTGCAATTGTTCGATGTGGAAGCTTACCTTCGCTTTCAGATTCTTCCTTGCGTCTAACGATCCCGCTACCGCCCGCAAGGAGCAACAGGCGATGCTAGAGG
CACTCGTCGGCGCCCCAGGCGCCGTCGACAGGATCACGGAATTCTTCTACCTCAAGACGCGCGAGATGATGGTCAGCGAGTCCTGGGGATCTGTCAAGCGGACCACGAAGAACGTCGATA
TCGTGCGTGACGTGCTGAAGTACGTTCCGCTGTACTGGGCCTGCGAGGTGGTAAGTGCTATATCTCTGCCTTTGCGCGCCTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTTCCTGTCAAAGCTGCCCGAGGGCTCATTCTCGACATCGCTGCAGAACCTCGTTATCGAGATGCTCTACAACGATCTCCCACACCCGCCAAGCACATATGTCGGGAAGCAGTACGCC
TGGCGCACCGCCGATGGCTCCTACAACAACATCTGCGACCCGGACATGGGCAAGGCGGGCACTCCGTACTCGCGCAGCGTCCAGCAAACCCATCCGCTCACGCGCAGGGAAATGCCTGAT
CCGGGTCTCATCTTCGACACGCTCCTGCGCCGGGAGAAGTTTGTCAAGCACCCGGCCGGCCTGTCGAGCATGATGTTTGCGTTTGCCGCGTTAGTCATACACACGGTATTCCGCACTTCT
CATGAAGATGTCACTATCAACGAGACGTCGTCCTATGTCGACCTCGCGCCGCTGTACGGATGCAACCAGGAGGCGCAGGACAAGATCCGCGTCCGGGACGGCCGCGGGCTCCTCTACCCT
GATACCTTCTCCGAGGACCGACTCATGCTACTGCCGCCCGCGGTGTGCGTGCTCCTGGTACTGTTCAGCAGGAACCACAACTACATTGCGCGCAAATTGCTCGAGATCAACGAACGGGGG
ACGTACACAGACCCGGATCTGATCCCGGCGGACGACAAGGACCGCATGACGAAGCTGCTTGCGCAAGAAGAGGAGATCTTCCAGACTGCACGCCTTATCAACTGCGCCTGGTTTGGTTCG
GCGATCTTCTCGGACTACTTCAGTGCAATCCTGGGTCTGGTTCGGCAGGGAAATAGCTGGAGCTTGAATCCGTTCGGGGAAATCCGTCAAGAGGACCACACTCTTTTTGAGCGAGGACGG
GGCAACGTGTGCAGTGTTGAGTTCAACTGTCTCTACCGCTGGCACGCCACGACCTCCGAATACGACGAGAAATGGGTCGAGCAGCTGACCGCGCACCTCTTCGGCGGTCGCAATCCCGAC
GACATCACTCCCGCCGACCTGAAGCAGGTCCTGCTCAAGGTCCAGGAGTCCGAGCCGGACGTCACGCATTGGACATTTGGCAACTTGAAGCGCCAGGAAGACGGCACGTTCAAGGACGAG
GAGCTTGCGGTAATCCTGATGACTGCGACGGAACATCCGGCTGGCGCTTTCAAGGCCCGTGGAACACCTGGGTGTATGCGTCTCCATGAGGTGATGGGCATCGAGGCAGCGCGTCGCTGG
GGTTGCTGCTCCTTGAACGACTTCAGAAAGATCGCTACGACAGCTGAAAGGCTTTACGGGGATATCGACCATCTTGAGCTGTACGTTGGTCTCCAAGCCGAAGAAGCCAAGCCCGTCATG
GACGGTGCTGGACTCTGCCCCTCGTACACCGTCAGCCGTGCCATCCTTGCAGACGCCATCGCACTCACGCGCGGTGACCGCTTTTTCACCGCGGACTACACGCCGTTCAACATGACCTCG
TGGGGCTTCGCGGACTGCCAGCGCGACGCGAACGCGCCGGGCTATGGCAGCACGCTCGGCCGCCTCTTCATGCGCACGCTCCCGAACCACTACAATGCGGACAGCACGTATACGTGGTTC
CCGCTCATGACGCCCGACGCCATGAAGACGATCCTCGCGAAGCTCGGCGACGCGGATATCTACAACATGGCGCGCCCGAGCCCCGAGCAGCACGTTACCGACGTCTTGGAATTCTTCCTT
GCGTCTAACGATCCCGCTACCGCCCGCAAGGAGCAACAGGCGATGCTAGAGGCACTCGTCGGCGCCCCAGGCGCCGTCGACAGGATCACGGAATTCTTCTACCTCAAGACGCGCGAGATG
ATGGTCAGCGAGTCCTGGGGATCTGTCAAGCGGACCACGAAGAACGTCGATATCGTGCGTGACGTGCTGAAGTACGTTCCGCTGTACTGGGCCTGCGAGGTGGTAAGTGCTATATCTCTG
CCTTTGCGCGCCTGA

Retrieve as FASTA