The peroxidases and oxidases database
Entry information : PcLDS01
Entry ID 6649
Creation 2009-03-29 (Christophe Dunand)
Last sequence changes 2012-03-28 (Catherine Mathe (Scipio))
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2015-12-23 (Christophe Dunand)
Peroxidase information: PcLDS01
Name PcLDS01
Class Linoleate diol synthase (PGHS like)    [Orthogroup: LDS001]
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Corticiaceae Phanerochaete
Organism Phanerochaete chrysosporium    [TaxId: 5306 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PcLDS01
start..stop		 S start..stop
PplLDS01-1 877 0 61..1002 69..1004
PplLDS01-2 861 0 61..1003 69..1005
JargLDS01 796 0 21..928 19..933
LbiLDS01 784 0 21..802 20..820
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 29258..29407 150 N° 2 29061..29208 148 N° 3 28745..29008 264 N° 4 28540..28695 156
N° 5 28377..28486 110 N° 6 27855..28321 467 N° 7 27767..27801 35 N° 8 27581..27714 134
N° 9 27462..27526 65 N° 10 27343..27376 34 N° 11 26611..27291 681 N° 12 26475..26560 86
N° 13 25924..26422 499 N° 14 25726..25805 80 N° 15 25576..25672 97 N° 16 25487..25507 21
complement(join(25487..25507,25576..25672,25726..25805,25924..26422,26475..26560 ,26611..27291,27343..27376,27462..27526,27581..27714,27767..27801,27855..28321,2 8377..28486,28540..28695,28745..29008,29061..29208,29258..29407))


exon

Literature and cross-references PcLDS01
Literature Martinez,D., Larrondo,L.F., Putnam,N., Sollewijn Gelpke,M.D., Huang,K., Chapman,J., Helfenbein,K.G., Ramaiya,P., Detter,J.C., Larimer,F., Coutinho,P.M., Henrissat,B., Berka,R., Cullen,D. and Rokhsar,D. Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78. Nat. Biotechnol. 22 (6), 695-700 (2004)
DNA ref. JGI genome:   scaffold_31 (29407..25487)
Protein sequence: PcLDS01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   1008
PWM (Da):   %s   111499.22  
PI (pH):   %s   5.86
Sequence 1387
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MGNMISEFKAELAERHTRLLSHTPPNEDGGRPHCHAPTDIVRDESAFRELINLCEDMRDALGGEGIDDRHLLLEKVLTWMATHSELDVEHRLESMVVEFLYKDLPHPPESYLSLPNEATHVPRSDVNYAFRPADGSNYNVMTPALGKAGTPYARSVPSARSLPASALPDASLVFDMLLKRDEFVPHPDGVSSLFFAFADLVIHSIFNTDRNDSTINNSSSYLDLSPLYGSSDKQVDTVRRKDGTGRLKEDVFADSRLLFMPPSACALLVLLCRNHYIADKMLAINEHGKFHAPETLEAPGRLAQDDELFARARLVNCGFFMQIILGDYVGAILGLARDGHAWRLKILEPYRSPTGGVVPRGEGNAVSAEFNLMYRWHATLSAPDTAWIEQEFRALFPGRDLATLTKEDFGRAYGHIRSRSAKEPQEWTFGGLKRGESGRYQVELAQILQNATEAEAGAFRARGIPEVMKVVELMAIEQARSWGTCLNEFRRFMGLKRKYIYVPYCGIFSEWNSDESVRAAQMLYHDIDNLELYVGLEAEEAKKPGPGAGLCPGYTLSRAILSDAVCLTRGDRFMTTDFTPQNLTAWGYNDCQFDVNDGSYGGMLTKLLFRTLPDCYPAGSVYAHFPFLVPKRMRKEFLSRDAALLDQYTWDRPVLPTSLLELPRPPPAYEARVRALTGRPATAFTGLEQVLFTPDALEAHRLSFLRFTDAQLHHQSLSIGGSKRYVDIVRDVVNMVPIFWIAAMIRPDATEAHDEGKHYRPDRYFQGFADLADYVYVNTDPSREFALRQRAQAVAASISKHVVGDAASLGMFDLISRIARRLQSALHTLEGSPLSPDGFVAQPPCAVPDVASFLPTLRLCGNSQGLASAFVGDLAASAAVLARCVARLVDRLLDGETHLRNELALAGLGVTDKQIAEQVYEAVRGMDDVGVEHGYVALTVPAMLHCIFSLPNLQRAPGPSGKLHRVVEGHDGAIVEVASYQNWKGEVTPWPSSLAVVVIDAT*

Retrieve as FASTA  
Remarks Complete sequence from genomic (17 introns) and 1 EST (DV759138). Strain="RP-78".
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGCAACATGATTTCCGAGTTCAAGGCTGAGCTTGCTGAGAGGCACACCCGCCTCCTTTCCCACACACCGCCCAACGAGGACGGCGGCCGCCCTCATTGCCATGCGCCAACAGACATT
GTGCGCGACGAGTCGGCCTTCCGTGAGCTGGTACGTCCGGACGGCCTCCACGGCTGCCACCCTCTAACAAGCCGGACAGATCAACCTCTGCGAAGATATGCGGGATGCCCTCGGTGGCGA
GGGCATCGACGACCGCCACCTGCTCCTCGAGAAGGTCCTCACCTGGATGGCGACGCACAGCGAACTGGACGTCGAGCACCGGCTCGAGAGCATGGTCGTCGAGTTCCGTACGTCGACACC
TGCGCCGCATCTCTGCGCTCATACTCACTGCCCCCACAGTGTACAAGGACCTGCCACACCCGCCAGAGTCGTACCTCTCACTCCCGAACGAGGCTACGCACGTGCCCCGCTCAGATGTCA
ACTACGCCTTCCGCCCTGCGGACGGCTCGAATTACAACGTCATGACCCCTGCCCTCGGCAAGGCGGGCACGCCCTACGCACGGTCAGTACCCTCGGCACGCTCGCTCCCAGCGTCCGCGC
TGCCCGACGCAAGTCTCGTCTTCGACATGCTCCTCAAGCGCGACGAGTTTGTGCCGCACCCAGGTACGCATCAACAATTTGGCGTCCCCACAGATTCTCACCGCGCCCCCAGACGGCGTT
TCAAGCCTGTTCTTCGCATTTGCGGACCTCGTCATCCACTCGATCTTCAACACGGACCGCAACGACTCGACGATCAACAACTCGAGCAGCTACCTCGACCTCAGCCCGCTCTACGGCAGC
TCGGACAAGCAGGTTGACACCGTTCGACGTGAGTTTCCGCACAGCCCGGTGGCATTAGCGCTAACTGGATTGATTTTGCAGGCAAGGACGGCACGGGCCGCCTGAAGGAGGATGTCTTCG
CGGACAGCCGGCTGCTGTTCATGCCGCCCTCGGCGTGCGCACTACTCGTGCTGCTCTGCCGGAACCATAACGTGCGTGTCCCAACTATTTCCTCGCTCACGTTCCACCTGCCAACGCTGC
GCGCAGTATATCGCCGACAAGATGCTCGCGATCAACGAGCACGGGAAGTTCCACGCGCCCGAGACACTCGAAGCCCCGGGACGACTGGCGCAGGACGACGAGCTCTTCGCGCGCGCGCGC
CTCGTGAACTGCGGGTTCTTCATGCAGATCATTCTCGGCGACTATGTCGGCGCGATTCTCGGGCTCGCGCGCGACGGGCACGCATGGCGGCTCAAGATCCTCGAGCCGTACCGCAGCCCG
ACCGGCGGCGTCGTCCCGCGCGGCGAGGGCAACGCCGTCTCGGCCGAGTTCAACCTCATGTACCGCTGGCACGCGACGCTCTCCGCGCCCGACACGGCGTGGATCGAGCAGGAGTTCCGC
GCGCTGTTCCCCGGCCGCGACCTCGCGACGCTCACGAAGGAGGACTTTGGCAGGGCGTACGGCCACATACGTTCCCGCTCCGCCAAGGAGCCGCAGGAGTGGACCTTTGGAGGGTGCGTC
CCTCGGCATGGTGCCGCTGCGAGCTCGGGTCTGACAATGTCTGCAGCCTTAAGCGCGGCGAGTCGGGACGCTACCAGGACGGTAAGTCGTATCTCTCCAAACCCGTGCATCGCCGATGCT
GACATCGCCGTAGTGGAGCTTGCACAGATTCTGCAGAACGCCACCGAGGCCGAGGCCGGCGCTTTCCGCGCTCGCGGCATTCCTGAGGTCATGAAGGTCGTCGAGCTCATGGCAATCGAG
CAGGCGAGGAGCTGGGGCACATGCTCAGTAAGCAAAATATACACCCCTCACAATGATCTACCCGCTAACGTTCGAGCATAGCTCAACGAGTTCAGGCGGTTCATGGGTCTCAAGCGTAAG
TACATTTATGTCCCTTACTGCGGGATGTGGTGCTGATGCAACTATCTGCAGCATATGCTAGGTCGGACCGTACCATAATCTCAGTTATTCCACTGCTGACTGTTGTCACAGCTTCTCTGA
GTGGAACTCGGACGAAAGCGTTGCTGTGCGTAGTCTCGGAGCTATTAAACATTCCTTCCTCTGATACCTGTCGCAGAGGGCCGCGCAGATGCTATACCACGACATTGACAACCTGGAGCT
TTACGTTGGCTTGGAGGCCGAGGAGGCCAAGAAGCCCGGCCCCGGCGCGGGCCTGTGTCCTGGCTACACGCTCTCGCGCGCCATTCTCTCCGACGCCGTCTGCCTCACGCGCGGCGACCG
GTTCATGACGACCGATTTCACACCGCAGAACCTGACAGCCTGGGGCTACAACGACTGCCAGTTCGACGTCAACGACGGCTCGTACGGCGGCATGCTCACGAAGCTCCTCTTCCGCACCCT
GCCGGACTGCTACCCGGCTGGCAGCGTGTATGCACACTTCCCGTTCCTCGTCCCGAAGCGCATGCGCAAGGAGTTCCTCTCCCGCGACGCCGCGCTCCTTGATCAGTACACGTGGGACCG
CCCCGTGCTGCCCACATCTCTCCTCGAGCTCCCGCGCCCGCCCCCTGCGTACGAGGCGCGCGTGCGTGCGCTCACGGGCCGCCCCGCCACTGCCTTCACTGGACTCGAGCAGGTTCTGTT
CACCCCCGACGCCCTTGAGGCGCACCGCCTCAGCTTCCTGCGCTTCACGGATGCACAGCTGCACCACCAGTCGCTCTCCATCGGCGGCAGCAAGCGGTACGTCGACATTGTCCGCGATGT
CGTCAACATGGTACCCATCTTCTGGATTGCCGCTATGGTCACTATTCATACATTTTCAGCTTGATCGGTCTCTAATGAGCTTCGCAGATCCGGCCAGATGCTACGGAGGCGCATGACGAA
GGCAAGCACTACCGTCCCGACCGGTACTTCCAGGGCTTTGCCGACCTCGCCGAGTACGTGTCCTTTGAGCTGACATCATTCGCGTGTCATTGAAATGTATCACAGCTACGTTTATGTCAA
CACCGACCCCAGCCGCGAGTTCGCGCTGCGGCAACGCGCCCAGGCCGTCGCAGCAAGCATCTCGAAGCACGTCGTCGGCGACGCTGCATCACTCGGGATGTTCGACCTCATCTCTCGCAT
CGCGCGCCGTCTCCAGTCTGCGCTCCACACCCTCGAGGGCTCGCCGCTGTCGCCGGACGGCTTCGTGGCGCAGCCGCCGTGCGCCGTCCCCGACGTCGCGTCTTTCCTTCCGACCCTCCG
GCTGTGCGGCAACTCCCAGGGCCTCGCCTCCGCCTTTGTCGGCGACCTGGCGGCGTCAGCGGCGGTGTTGGCGCGCTGCGTCGCGCGCCTCGTGGACCGCCTGCTCGACGGCGAGACGCA
CCTCCGCAACGAGCTTGCGCTGGCGGGCCTTGGCGTGACCGATAAGCAGATTGCGGAGCAGGTGTACGAGGCGGTTCGCGGCATGGACGATGTTGGCGTCGAGCATGGGTACGTCGCTCT
CATTGTATTGATCACAGCGCCTGTCTAATGCGGGTCGCAACAGTCTCATGGATAAGCGTTTCATTGAGGCGGTAAGTCGTATGTAGTGAATTTTGCACGGCGTGTCTGACCAGCAGTTGC
AGACTGTACCCGCCATGCTGCATTGCATCTTCAGCCTGCCCAACCTCCAGCGCGCTCCTGGTCCGTCTGGTAAACTCCATCGGTTCGTGTCTTTGTGACTCTCCCTGTGCGTACATTCTG
AATTCTCCTGTGCAGAGTCGTTGAGGGGCATGACGGCGCGATCGTCGAGGTTGCCTCGTACCAAAACTGGAAGGGCGAGGTCACACCATGGCCCTCTTCCCTGGCTGTCGAGGTATGTCT
ATGTGCCCGTTACAAGGATTACGCCTGCTGATTTGACGTTCAGTACTCCGAACTCCTCAGGTTGTAATTGATGCAACGTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGCAACATGATTTCCGAGTTCAAGGCTGAGCTTGCTGAGAGGCACACCCGCCTCCTTTCCCACACACCGCCCAACGAGGACGGCGGCCGCCCTCATTGCCATGCGCCAACAGACATT
GTGCGCGACGAGTCGGCCTTCCGTGAGCTGATCAACCTCTGCGAAGATATGCGGGATGCCCTCGGTGGCGAGGGCATCGACGACCGCCACCTGCTCCTCGAGAAGGTCCTCACCTGGATG
GCGACGCACAGCGAACTGGACGTCGAGCACCGGCTCGAGAGCATGGTCGTCGAGTTCCTGTACAAGGACCTGCCACACCCGCCAGAGTCGTACCTCTCACTCCCGAACGAGGCTACGCAC
GTGCCCCGCTCAGATGTCAACTACGCCTTCCGCCCTGCGGACGGCTCGAATTACAACGTCATGACCCCTGCCCTCGGCAAGGCGGGCACGCCCTACGCACGGTCAGTACCCTCGGCACGC
TCGCTCCCAGCGTCCGCGCTGCCCGACGCAAGTCTCGTCTTCGACATGCTCCTCAAGCGCGACGAGTTTGTGCCGCACCCAGACGGCGTTTCAAGCCTGTTCTTCGCATTTGCGGACCTC
GTCATCCACTCGATCTTCAACACGGACCGCAACGACTCGACGATCAACAACTCGAGCAGCTACCTCGACCTCAGCCCGCTCTACGGCAGCTCGGACAAGCAGGTTGACACCGTTCGACGC
AAGGACGGCACGGGCCGCCTGAAGGAGGATGTCTTCGCGGACAGCCGGCTGCTGTTCATGCCGCCCTCGGCGTGCGCACTACTCGTGCTGCTCTGCCGGAACCATAACTATATCGCCGAC
AAGATGCTCGCGATCAACGAGCACGGGAAGTTCCACGCGCCCGAGACACTCGAAGCCCCGGGACGACTGGCGCAGGACGACGAGCTCTTCGCGCGCGCGCGCCTCGTGAACTGCGGGTTC
TTCATGCAGATCATTCTCGGCGACTATGTCGGCGCGATTCTCGGGCTCGCGCGCGACGGGCACGCATGGCGGCTCAAGATCCTCGAGCCGTACCGCAGCCCGACCGGCGGCGTCGTCCCG
CGCGGCGAGGGCAACGCCGTCTCGGCCGAGTTCAACCTCATGTACCGCTGGCACGCGACGCTCTCCGCGCCCGACACGGCGTGGATCGAGCAGGAGTTCCGCGCGCTGTTCCCCGGCCGC
GACCTCGCGACGCTCACGAAGGAGGACTTTGGCAGGGCGTACGGCCACATACGTTCCCGCTCCGCCAAGGAGCCGCAGGAGTGGACCTTTGGAGGCCTTAAGCGCGGCGAGTCGGGACGC
TACCAGGACGTGGAGCTTGCACAGATTCTGCAGAACGCCACCGAGGCCGAGGCCGGCGCTTTCCGCGCTCGCGGCATTCCTGAGGTCATGAAGGTCGTCGAGCTCATGGCAATCGAGCAG
GCGAGGAGCTGGGGCACATGCTCACTCAACGAGTTCAGGCGGTTCATGGGTCTCAAGCGTAAGTACATTTATGTCCCTTACTGCGGGATCTTCTCTGAGTGGAACTCGGACGAAAGCGTT
GCTAGGGCCGCGCAGATGCTATACCACGACATTGACAACCTGGAGCTTTACGTTGGCTTGGAGGCCGAGGAGGCCAAGAAGCCCGGCCCCGGCGCGGGCCTGTGTCCTGGCTACACGCTC
TCGCGCGCCATTCTCTCCGACGCCGTCTGCCTCACGCGCGGCGACCGGTTCATGACGACCGATTTCACACCGCAGAACCTGACAGCCTGGGGCTACAACGACTGCCAGTTCGACGTCAAC
GACGGCTCGTACGGCGGCATGCTCACGAAGCTCCTCTTCCGCACCCTGCCGGACTGCTACCCGGCTGGCAGCGTGTATGCACACTTCCCGTTCCTCGTCCCGAAGCGCATGCGCAAGGAG
TTCCTCTCCCGCGACGCCGCGCTCCTTGATCAGTACACGTGGGACCGCCCCGTGCTGCCCACATCTCTCCTCGAGCTCCCGCGCCCGCCCCCTGCGTACGAGGCGCGCGTGCGTGCGCTC
ACGGGCCGCCCCGCCACTGCCTTCACTGGACTCGAGCAGGTTCTGTTCACCCCCGACGCCCTTGAGGCGCACCGCCTCAGCTTCCTGCGCTTCACGGATGCACAGCTGCACCACCAGTCG
CTCTCCATCGGCGGCAGCAAGCGGTACGTCGACATTGTCCGCGATGTCGTCAACATGGTACCCATCTTCTGGATTGCCGCTATGATCCGGCCAGATGCTACGGAGGCGCATGACGAAGGC
AAGCACTACCGTCCCGACCGGTACTTCCAGGGCTTTGCCGACCTCGCCGACTACGTTTATGTCAACACCGACCCCAGCCGCGAGTTCGCGCTGCGGCAACGCGCCCAGGCCGTCGCAGCA
AGCATCTCGAAGCACGTCGTCGGCGACGCTGCATCACTCGGGATGTTCGACCTCATCTCTCGCATCGCGCGCCGTCTCCAGTCTGCGCTCCACACCCTCGAGGGCTCGCCGCTGTCGCCG
GACGGCTTCGTGGCGCAGCCGCCGTGCGCCGTCCCCGACGTCGCGTCTTTCCTTCCGACCCTCCGGCTGTGCGGCAACTCCCAGGGCCTCGCCTCCGCCTTTGTCGGCGACCTGGCGGCG
TCAGCGGCGGTGTTGGCGCGCTGCGTCGCGCGCCTCGTGGACCGCCTGCTCGACGGCGAGACGCACCTCCGCAACGAGCTTGCGCTGGCGGGCCTTGGCGTGACCGATAAGCAGATTGCG
GAGCAGGTGTACGAGGCGGTTCGCGGCATGGACGATGTTGGCGTCGAGCATGGGTACGTCGCTCTCATTACTGTACCCGCCATGCTGCATTGCATCTTCAGCCTGCCCAACCTCCAGCGC
GCTCCTGGTCCGTCTGGTAAACTCCATCGAGTCGTTGAGGGGCATGACGGCGCGATCGTCGAGGTTGCCTCGTACCAAAACTGGAAGGGCGAGGTCACACCATGGCCCTCTTCCCTGGCT
GTCGAGGTTGTAATTGATGCAACGTAG

Retrieve as FASTA