RedOxiBase: View Perox 6654

Entry information : PplLDS01-1 ( PplLDS01a)

Entry ID	6654
Creation	2009-03-29 (Christophe Dunand)
Last sequence changes	2012-04-06 (Catherine Mathe (Scipio))
Sequence status	complete
Reviewer	Christophe Dunand
Last annotation changes	2016-02-11 (Christophe Dunand)

Peroxidase information: PplLDS01-1 ( PplLDS01a)

Name (synonym)

PplLDS01-1 ( PplLDS01a)

Class

Linoleate diol synthase (PGHS like) [Orthogroup: LDS001]

Taxonomy

Eukaryota Fungi Basidiomycota Agaricomycetes Coriolaceae Postia

Organism

Postia placenta [TaxId: 104341 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

Alkaline treatment

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	PplLDS01-1 start..stop	S start..stop
PplLDS01-2	2042	0	1..1004	1..1004
JargLDS01	1122	0	7..1005	5..1067
LbiLDS01	961	0	15..1005	14..1070
CcinLDS01	904	0	4..1007	1..1088

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	1..177	177	N° 2	242..304	63	N° 3	363..447	85	N° 4	506..778	273
N° 5	852..1007	156	N° 6	1066..1175	110	N° 7	1235..1453	219	N° 8	1518..1682	165
N° 9	1745..1827	83	N° 10	1891..1925	35	N° 11	1979..2112	134	N° 12	2174..2207	34
N° 13	2259..2302	44	N° 14	2358..2405	48	N° 15	2457..2595	139	N° 16	2651..2976	326
N° 17	3029..3208	180	N° 18	3259..3344	86	N° 19	3398..3518	121	N° 20	3570..3855	286
N° 21	3916..3920	5	N° 22	3972..4015	44	N° 23	4072..4099	28	N° 24	4149..4228	80
N° 25	4278..4368	91	N° 26	4427..4438	12
join(1..177,242..304,363..447,506..778,852..1007,1066..1175,1235..1453,1518..168 2,1745..1827,1891..1925,1979..2112,2174..2207,2259..2302,2358..2405,2457..2595,2 651..2976,3029..3208,3259..3344,3398..3518,3570..3855,3916..3920,3972..4015,4072 ..4099,4149..4228,4278..4368,4427..4438)

Literature and cross-references PplLDS01-1 ( PplLDS01a)

Literature	Lucas,S., Rokhsar,D., Wang,M., Lindquist,E.A., Challacombe,J., Grigoriev,I., Brettin,T. and Cullen,D. DOE Joint Genome Institute Postia placenta EST project
DNA ref.	JGI genome: scaffold_130 (159655..155218)
EST ref.	GenBank: FL618119.1 FL621887.1 [3' end]

Protein sequence: PplLDS01-1 ( PplLDS01a)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	1007 (300)
PWM (Da):	110451.73 (32904.6)
PI (pH):	5.86 (8.72)	Peptide Signal:	cut: 24 range:24-323

Sequence 1688
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MVNLNPVLNPLKNTIDFVAESDAPVDQDGGHPLPPLLARKITDVEQEAIRGPGFTPADLPAYINAVKTLNGPGLDDRKFLLEKVLTLMARAPDDSAFAATLQKFAIDILYKDLPHPPSGYLALPSGAPPAASPITKGVKYAYRSADGSDYHVLIPTLGMAGTPYARSVPSTTRIPPQYLPDPGLVFDTLLKREKFVEHPGGISSLFFAFADLVIHSIFNTNTRDWTINDASSYLDLSPLYGSSQAQVDSVRRKDGTGRLYEDVFADPRLLFMPPASCALLVLFCRNHYVAERILAINELGSYRAPSTLGAQERAAQDEELFQRARLVNSALFMQVILGDYVGAILGLTRDGLAWRLDPLAAMRELNHAFSPQGEGNVVAVEFNLMYRWHATSSVSDTQWIENLFGELFPGKSWSDISVNDFRTAIIKYVMGTPQDVKEWSFDNLKRGPDGRYDVELANILQSATEAPASAFGARGTPEVLRVIEILGIMQARSWGTCLNEFRSFMGLKPYSTFAEWNPDPKIKAAEALYHDIDNLELYAGLQAEETKVPMPGAGLCPGYTISRAILADAVCLTRGDRFLTVDLTPFNLTTWGYQDCQYKKDDGSIGGILSKLLFRTLPNQYPADSAYAFFPFMVPKTMKGHVAADAVNKYSWDRPALAAPVTSLLGPSVSAPVSEYEKRLKAILGGVVPDRAVRQVLFSDASIQQWAQSFQEITQQLLKTKSVDHVDSKAKYVNIVRDVINVLPVVWISNFIVGLPLKTETNPHGVYREHDLLTKWSDIGNYVFLDQSPEGQFALRGKCTETAKDVTGFVKGHCAELSGHLSGFADSVVDYVTGGNEHERSFIKSLLAGRHGSHDALAAGVIAEVVATAPLYSRILAEVVDYYLDDGKRARLVSVLTGESVNRDEKLLALIREALPGDVQKLDAARSVDFGLLDHRFLATAFTVLRTIFSLKDLKRAPGSSGSLNRFADDTNGELRPVYLTSQGSVTPWPVSMLVYNL*

Retrieve as FASTA

Remarks

Complete sequence from genomic (23 introns) and 12 ESTs. Also found in scaffold_37 (22368..26751).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGTCAACCTGAACCCCGTTCTCAACCCGCTCAAGAATACCATCGACTTTGTTGCCGAGAGCGACGCCCCCGTCGACCAGGATGGCGGGCACCCCCTCCCTCCTCTACTCGCCCGCAAA
ATCACGGACGTCGAGCAGGAAGCTATCCGTGGGCCCGGCTTCACTCCCGCCGACCTGGTAAGCCACCGGTATATCGTCGGACTTATGCGCTGAATGTAGCTCACAACCCTTTGCGCCTTA
GCCTGCATATATCAACGCCGTAAAGACTCTCAATGGCCCTGGTCTTGACGACCGCAAGTTCCTGGTGAGCATCCCGGGCCTATTGAGTGTTGCTGGCAACGTCCGACGACGCGTACCTGC
AGCTCGAGAAGGTGCTCACGCTCATGGCGCGCGCCCCGGACGACTCGGCCTTCGCGGCAACGCTTCAAAAGTTCGCGATTGACATCCGTGAGCGCATATATGCGGTGAAATTAGCGCCCA
CTGTTCTGACCGATGTGCATACTAGTGTACAAGGACCTGCCTCATCCCCCGAGCGGGTACCTGGCACTCCCCAGCGGCGCGCCCCCGGCTGCATCGCCCATCACTAAGGGTGTCAAGTAC
GCCTACCGCAGTGCCGACGGCTCCGACTACCATGTCCTCATCCCTACCTTGGGCATGGCCGGCACGCCATACGCACGCTCTGTGCCCTCCACCACGCGCATCCCCCCGCAGTATCTCCCC
GACCCGGGCCTCGTCTTCGACACGCTCCTCAAACGCGAGAAGTTTGTCGAACATCCAGGTACGTGCGCCGCCTGCGCTTCCCTCTCTTTCTTGCGTATATATATTCAGGCTCATGATGTC
ATGCCCTGCAGGCGGCATATCGAGCCTGTTCTTCGCCTTTGCCGACCTCGTCATCCACAGCATCTTCAACACCAACACGCGCGACTGGACCATCAACGACGCCTCCAGCTACCTCGACCT
CAGCCCCCTCTACGGCAGCTCCCAGGCGCAGGTCGACAGTGTCCGCCGTAAGCCCTCTCGCGCACTTCAGTGCACACCTGCTGACTGTACGCGTGACGTTCGCAGGCAAGGATGGCACTG
GCAGGCTCTACGAGGACGTCTTTGCCGACCCGCGACTGCTCTTCATGCCCCCCGCGTCGTGCGCGCTGCTCGTCCTCTTCTGCCGCAACCACAACGTAAGCCCTCCAATCCGTGTGCACT
TCGCCGCGCGGGACTCACCGCGCTTGGCACGCAGTACGTTGCCGAGAGGATCCTCGCCATCAACGAGCTCGGGAGTTATCGCGCGCCCAGCACGCTCGGCGCGCAGGAGCGCGCCGCACA
GGACGAGGAGCTCTTCCAGCGCGCGCGCCTCGTCAACAGCGCGCTCTTCATGCAGGTCATCCTGGGCGACTACGTCGGCGCGATCCTTGGCCTCACGCGCGACGGCCTCGCGTGGCGCCT
CGACCCGCTCGCGGTGCGTCTGTGTATGCGTGGGCGCGTGTGTGCATGTGCTGACGCGCGATCGGCGCCCCCCACAGGCCATGCGCGAGCTCAACCACGCGTTCTCGCCGCAGGGCGAGG
GCAACGTCGTCGCGGTCGAGTTCAACCTGATGTACCGCTGGCATGCGACGAGCTCCGTGTCCGACACGCAGTGGATCGAGAACCTCTTTGGAGAGCTCTTCCCGGGGAAGTCGTGGAGTG
ACGTAAGCACCTTCATCGCGCGCGTGCGCGCGTGCGGGTGTCTGACCTCAGTGCTATGGGACAGATCTCCGTGAATGACTTCCGCACCGCCATCATCAAGTATGTGATGGGCACGCCGCA
GGACGTGAAGGAGTGGTCGTTTGACAAGTAAGGAAACGCGCGCTTCGTGCTGGCGTAATTTTCGATTGAAGGGAATTCCTTTATGAACAGCCTGAAGCGTGGTCCGGACGGCCGTTACGA
CGACGGTGGGTGTGCACTCTCCCACGGGCGAGCGCGTTCGCTGACGACGTGTTTGCAGTGGAGCTCGCGAACATTCTGCAGAGCGCGACTGAGGCCCCCGCGAGTGCGTTCGGGGCGCGC
GGCACGCCCGAGGTACTGCGCGTGATCGAGATCCTCGGCATCATGCAGGCTAGGAGCTGGGGGACGTGCTCGGTGCGTGCCATATCGATTCCGTCGCACCCTGCGGAAGTCTGATGCATA
TGCTATCCGCCAGTTGAACGAGTTCAGGAGCTTCATGGGCCTGAAGCGTGAGTGCCAGCAGCTGGGTGGTCAGAGCCCTCAGTTGACGCGTTTTACAGCTTATAGCACCTTCGCGGAGTG
GAACCCCGATCCGAAGATCTACGTACGCGATTTTTTCATCGCGTCCCGCTCGGTCAGATCGCTGACGCCCGCTGTAGAAGGCAGCGGAAGCCTTGTACCACGACATCGACAACCTGGAGC
TTTACGTAGGGACACTCTTCTTAGGAGATATGCTCTTGACTCAGTCTTGTGTGTAGGCCGGGCTGCAAGCGGAGGAGACCAAGGTGCCGATGCCAGGTGCAGGCCTGTGCCCGGGTTACA
CAATCTCGCGCGCGATCCTTGCGGACGCTGTGTGCCTCACCCGTGGCGACCGCTTCCTCACTGTGGACCTCACGCGTAAGTCCGTTCCAGAAAGCACCCTGCTGAAACTGGCACTCACGC
GCCGTTCCAGCGTTCAACCTCACGACCTGGGGCTACCAGGACTGCCAGTATAAGAAGGATGACGGCTCGATCGGCGGCATCCTGTCCAAGCTGCTCTTCCGCACGCTGCCAAACCAGTAC
CCTGCCGACTCTGCGTACGCGTTCTTCCCGTTCATGGTGCCCAAGACGATGAAGGGCCACGTCGCGGCGGACGCGGTGAACAAGTACTCCTGGGACAGGCCTGCGCTGGCTGCCCCAGTC
ACCTCGCTGCTGGGCCCTAGCGTGTCCGCTCCCGTCTCGGAGTATGAAAAGCGTCTCAAGGCAATCTTGGGCGGCGTTGTGCCTGACCGAGCGGCGGTATGCAGCCCCTCCTGCGTTGAC
GTGCAGGTGCCTGATGGTAGCGGCATAGGTTCGGCAAGTTCTCTTTAGCGACGCGTCCATCCAGCAATGGGCACAGTCCTTCCAGGAGATCACGCAGCAGCTGCTCAAGACAAAGTCGGT
GGATCACGTTGACAGCAAGGCGAAATACGTCAACATCGTCCGCGATGTCATCAACGTGCTTCCCGTCGTCTGGATCTCCAACTTCATCGTGCGTTCCTACGTCTCATGGATTGTCGCCGC
TGTCTCACGTAGAACTAGGTCGGGCTCCCTCTGAAGACGGAGACAAACCCCCACGGCGTATACCGTGAACATGACCTGCTGACAAAGTGGTCAGACATTGGAAAGTTAGTACAGTTATTT
ATGCGTCCCTTGACGACACCTGATTGCGTGACATCAGCTATGTTTTCTTGGATCAATCTCCCGAAGGCCAGTTTGCGCTTCGCGGAAAGTGTACCGAGACCGCCAAGGACGTCACCGGTT
TCGTTAAAGGTCATTGTGCCGAGCTCTCTGGCCACAGCGTACGTCCCGCGCGCTCTGAGCTCGTGTTCAGTACTAACGAATACGTGCAGCTCTCTGGATTCGCAGATTCTGTCGTCGACT
ATGTCACAGGAGGGAATGAGCACGAGAGGTCATTTATTAAGTCGCTGCTTGCTGGGCGACACGGTTCGCATGATGCCCTTGCTGCGGGTGTGATCGCCGAAGTGGTCGCTACCGCACCAC
TCTACTCCCGAATCCTGGCTGAAGTCGTTGATTACTACCTCGATGATGGCAAACGCGCTCGTCTCGTCTCGGTCCTAACTGGCGAGTCAGTGAACCGCGACGAGAAACTACTCGCGCTCA
TCCGAGAGGCTCTCCGTAAGTGCTCTTTGAGCTTGTTATACCATTGCCCTTACTGAATTATGTTGGACATTGTAGCTACCGTATGTGTAAACGTTTGTCAGACACGATGCTGCATTACTC
ATTCGTTACAGGGGGATGTGCAGAAGCTCGACGCTGCTAGATCAGTGGATTTCGGGTATGCTACACTCTACATTAGCTTATATTACCATTGCTCACTCAATTTTCCACTAGTCTGCTTGA
TCACAGGTTCCTCGCAAAGGTAAGGCAGCCGCTGCTAATTACCCAGCTTATATTGACCTCGTCACCAGACGGCTTTCACGGTATTGCGAACAATCTTCTCCCTTAAGGATCTCAAGCGGG
CACCTGGTTCCTCGGGTAGTCTGAACCGGTAAGTTATTTGTGATCGAAATTGGGTGTGTATGTTCATGCCGTCGCAGATTCGCAGACGACACGAACGGCGAGTTGCGTCCCGTCTACCTG
ACCTCCCAGGGATCGGTGACACCATGGCCAGTGTCAATGCTAGTTCAAGTAGGTTTCACCCATTAGCAGTCAGAGAGCTGTATGCTGAACCGCCTCGTATTTGTAGTATAACCTGTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA