Entry information : PplCIIBA
Entry ID 6737
Creation 2009-05-25 (Christophe Dunand)
Last sequence changes 2012-04-11 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2015-04-30 (Christophe Dunand)
Peroxidase information: PplCIIBA
Name PplCIIBA
Class Other class II peroxidase type A    [Orthogroup: CIIBA001]
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Coriolaceae Postia
Organism Postia placenta    [TaxId: 104341 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PplCIIBA
start..stop
S start..stop
LsulCIIBA01 416 9.1e-147 4..311 33..342
WcoCIIBA 407 8.83e-144 8..306 23..323
FpinCIIBA 382 9.31e-134 12..285 47..320
DqueCIIBB01 365 6.06e-128 18..280 2..264
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '6737' 'complement(join(1049946..1049996,1050057..1050223,1050292..1050436,1050494..1050788,1050863..1050941,1050997..1051038,1051089..1051102,1051157..1051261,1051323..1051387))' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1051323..1051387 63 N° 2 1051157..1051261 103 N° 3 1051089..1051102 12 N° 4 1050997..1051038 40
N° 5 1050863..1050941 77 N° 6 1050494..1050788 293 N° 7 1050292..1050436 143 N° 8 1050057..1050223 165
N° 9 1049946..1049996 49  
complement(join(1049946..1049996,1050057..1050223,1050292..1050436,1050494..1050 788,1050863..1050941,1050997..1051038,1051089..1051102,1051157..1051261,1051323. .1051387))


exon

Literature and cross-references PplCIIBA
DNA ref. JGI genome:   scaffold_1 (1051387..1049946)
mRNA ref. JGI transcript:   50226 [3' end]
Protein sequence: PplCIIBA
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   320
PWM (Da):   %s   33774.66  
PI (pH):   %s   5.12
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MYTSSCLPNCSLQIREELQANFFGKGHCKGPAREAIRLTFHDGIGRSATLAASGTFGGGGDGSIIKFADSELADPANDGLEDIVYALKSFADNHGVSYGDIIQFAGAVALSNCPGSPRLA
FYAGRPQAIAPSPPGLIPSPTDSVKDILARMSDAGFTPDDTVALLAAHSVAVQNTVDPTIPDTPLDSTPELFDTQFYL
TLLRGTTYPGTGRNTAGVKSPSKHLFRLASDAAIARDARTAC
RWQSFA
HDQEALRTSFRNAMLKLANQGFEGLINCSFIIPESLPHWKAATFPYGTNASDIEHCPSNSSPEGVIPDVSR*

Retrieve as FASTA  
Remarks Complete sequence from genomic (7 introns). No EST. Incorrect prediction from JGI. Prob of splicing prediction of the PS when compared with orther orthologs. Also detected in scafold_58 (mismatchs but gene identity between the 2 scaffolds).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTACACGAGTTCTTGCCTTCCAAACTGTTCACTCCAAATTCGGGAAGAATTACAAGCAAATTTGTGGGCGCCATCCAAGCGCTTTATCGCGACTATTGTCAAAATCTTACACATGACT
CCGCAGCTCTTTGGCAAAGGGCACTGTAAAGGACCCGCACGAGAGGCAATTCGACTGACCTTCCATGACGGCATCGGCCGGTCTGCCACATTGGCAGCTTCTGGTACTTTTGGGTACGAC
TTTTCTCAATTCCAAGCTGTTTACGTTTGATAGGCGATTGTACGTAGCGCGGAGGCGGGGCAGGTAGGCCTGCATGTCATCACCAGCGATACAATGGACTCATATCAGGAAAGACACGGC
AGCATAATCAAGTTCGCGGACTCTGAACTTGCAGACC
GTGAGATGCACATGTCCCCTAACTCGGCTCCTTGACAGCTGTTCTGATACTGCAGCCCCGCGAATGACGGACTGGAAGACATA
GTCTACGCCCTGAAATCCTTCGCCGACAACCACGGAGTAAGCTACGGAGACAT
GTAAGGACACGCCGTTCTGTCCTCTTCCCACGGCTTTCCTCGATACTTGTTCCGCATCGCTGACGTC
ATCCAAGTATATCCAATTCGCCGGAGCTGTGGCCCTCTCGAATTGCCCTGGGAGTCCTCGCCTTGCATTCTACGCTGGACGTCCTCAGGCTATCGCTCCGTCTCCGCCCGGCCTTATTCC
GTCACCCACGGACTCTGTCAAAGATATCTTAGCCCGGATGTCTGATGCTGGATTCACACCCGATGACACCGTAGCGCTTTTGGCCGCTCATTCCGTTGCTGTACAGAACACTGTCGACCC
CACCATCCCTGATACTCCCCTCGATTCGACCCCTGAACTCTTTGACACGCAGTTCTATCTGGAG
GTATGTCTGGGAATGTGGTCTGCCTGGCGCTATTTTGTAACGTTTCGGCGGCGAAA
GACACGCTGCTGAGGGGAACAACTTATCCCGGAACAGGAAGAAACACGGCAGGGGTCAAGTCGCCGTCCAAGCACCTGTTTCGGCTTGCGTCCGACGCGGCAATAGCTCGTGATGCCCGC
ACAGCATGCAGGTGGCAGTCTTTCGCTC
GTGAGTGTGCCTCAAGGCGGTGCTCAGAACACGGCTTTACAAGCGCCCCTGGCGCTTCATGACATCAGACACGATCAGGAAGCGCTGCGGAC
CTCGTTCCGGAATGCAATGTTGAAGCTGGCAAATCAAGGATTCGAAGGCCTCATTAACTGCTCTTTCATCATCCCTGAATCGCTTCCACATTGGAAAGCTGCGACATTCCCTTATGGAAC
AAACGCATCTGATATCGAACACTCA
GTAAGTCGCGCCTACTTCCAAAAAATTCATTTGCAATCTAATCCCCGCGGTATATATCAGTGTGTCCGAGCAACTCCTCCCCGGAGGGCGTTATT
CCGGACGTATCGAGATAA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTACACGAGTTCTTGCCTTCCAAACTGTTCACTCCAAATTCGGGAAGAATTACAAGCAAATTTCTTTGGCAAAGGGCACTGTAAAGGACCCGCACGAGAGGCAATTCGACTGACCTTC
CATGACGGCATCGGCCGGTCTGCCACATTGGCAGCTTCTGGTACTTTTGG
CGGAGGCGGGGCAGACGGCAGCATAATCAAGTTCGCGGACTCTGAACTTGCAGACCCCGCGAATGACGGA
CTGGAAGACATAGTCTACGCCCTGAAATCCTTCGCCGACAACCACGGAGTAAGCTACGGAGACAT
TATCCAATTCGCCGGAGCTGTGGCCCTCTCGAATTGCCCTGGGAGTCCTCGCCTT
GCATTCTACGCTGGACGTCCTCAGGCTATCGCTCCGTCTCCGCCCGGCCTTATTCCGTCACCCACGGACTCTGTCAAAGATATCTTAGCCCGGATGTCTGATGCTGGATTCACACCCGAT
GACACCGTAGCGCTTTTGGCCGCTCATTCCGTTGCTGTACAGAACACTGTCGACCCCACCATCCCTGATACTCCCCTCGATTCGACCCCTGAACTCTTTGACACGCAGTTCTATCTGGAG
ACGCTGCTGAGGGGAACAACTTATCCCGGAACAGGAAGAAACACGGCAGGGGTCAAGTCGCCGTCCAAGCACCTGTTTCGGCTTGCGTCCGACGCGGCAATAGCTCGTGATGCCCGCACA
GCATGCAGGTGGCAGTCTTTCGCTC
ACGATCAGGAAGCGCTGCGGACCTCGTTCCGGAATGCAATGTTGAAGCTGGCAAATCAAGGATTCGAAGGCCTCATTAACTGCTCTTTCATCATC
CCTGAATCGCTTCCACATTGGAAAGCTGCGACATTCCCTTATGGAACAAACGCATCTGATATCGAACACTCA
TGTCCGAGCAACTCCTCCCCGGAGGGCGTTATTCCGGACGTATCGAGA
TAA

Retrieve as FASTA