View Redoxidase 6836

Entry information : PcLiP08_RP78 (PcLiPH_RP78)

Entry ID	6836
Creation	2009-05-29 (Christophe Dunand)
Last sequence changes	2011-11-24 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2013-02-12 (Christophe Dunand)

Peroxidase information: PcLiP08_RP78 (PcLiPH_RP78)

Name (synonym)

PcLiP08_RP78 (PcLiPH_RP78)

Class

Lignin peroxidase [Orthogroup: LiP001]

Taxonomy

Eukaryota Fungi Basidiomycota Agaricomycetes Corticiaceae Phanerochaete

Organism

Phanerochaete chrysosporium [TaxId: 5306 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	PcLiP08_RP78 start..stop	S start..stop
PcLiP01_RP78	719	0	1..368	1..372
PcLiP08_BKMF1767	717	0	1..368	1..372
PcLiP01_SC26	672	0	28..368	1..345
PcLiP07_RF78	662	0	1..368	1..372

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	454867..454927	59	N° 2	454657..454810	152	N° 3	454546..454602	55	N° 4	454271..454485	213
N° 5	452425..452454	28	N° 6	452290..452368	77	N° 7	451817..452240	422	N° 8	451700..451764	63
N° 9	451627..451648	20
complement(join(451627..451648,451700..451764,451817..452240,452290..452368,4524 25..452454,454271..454485,454546..454602,454657..454810,454867..454927))

Literature and cross-references PcLiP08_RP78 (PcLiPH_RP78)

DNA ref.	JGI genome: scaffold_19 (454927..451627)

Protein sequence: PcLiP08_RP78 (PcLiPH_RP78)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	368 (347)
PWM (Da):	39101.17 (36982.0)	Transmb domain:	i9-28o
PI (pH):	4.22 (4.18)	Peptide Signal:	cut: 22 range:22-368

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MAFKQLFAAISLALSLSAANAVAVKEKRATCANGVTVGDASCCAW
FDVLDDIQENLFHGGQCGAEAHESIRLVFHDSIAISPAMEAQGKFGGGGADGSIMIFDDIETAFHPNIGLDEIVKLQKPFVQKHNVTPGDFIAFAGAVALSNCPGAPQMNFFTGRAAPDGLVPEPFHTVDQIISRVNDAGQFDELELVWMLSAHSVAAVNDVDPTVQGLPFDSTPGIFDSQFFVETQLRGTAFPGSGGNQGEVESPLPGEFRIQSDHTIARDSRTACEWQSFVNNQSKLVSDFQFI
FLALTQLGQDPNAMTDCSDVIPQSKPIPGNLPFSFFPAGKTINDVEQCAETPFPTLTTLPGPETSVQRIPPPPGA

Retrieve as FASTA

Remarks

Complete sequence from genomic (9 introns). Probable problem with intron 4: too large and 4 aa are missing from the exon 5 (no AG at the correct position)

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCCTTCAAGCAGCTCTTTGCGGCTATCTCTCTTGCGCTCTCGCTCTCGGCTGCGAACGGTCTGCCTTTCGCACTTTATGCTCACTCTACGTGCTGAATGTTTGTTTGGTTATAGCGC
GGTCGCAGTGAAGGAGAAGCGCGCAACCTGCGCTAACGGCGTGACCGTTGGTGACGCGTCCTGTTGCGCCTGGTTCGATGTTTTGGATGACATCCAGGAGAATCTGTTCCACGGCGGGCA
GTGCGGCGCTGAAGCGCACGAGTCGATCCGTCTGTAGGTCTTACAGTCGCAGTCATCCCGCGTATATGCCTCTGAGCTCCTGCACAGCGCGTCTTCCACGATTCTATCGCTATCTCTCCC
GCTATGGAGGCCCAGGGCAAGTTCGGGTAAGTGACGGCGTGCGTGATGGTACGCATTGCTCGGTCGTTGCTGAGCCTTGCTTGCAGAGAGGTGGTGGTGCAGACGGCTCCATCATGATCT
TCGACGACATCGAGACGGCGTTCCATCCCAACATCGGTCTCGACGAGATTGTCAAGCTTCAGAAGCCGTTCGTCCAGAAGCACAACGTCACCCCTGGCGACTTTATCGCCTTCGCCGGGG
CTGTCGCACTCAGCAACTGCCCTGGTGCCCCTCAAATGAACTTCTTCACCGGTCGCGCTCCTGGTATGTGCTTCATTCCAGTTCACCCCAAGGATTCCCAATAACATTGGGACTGTAGCT
ACATCAGCAATTTCCTAGCGGCTCTTACAGCGCCTTTGGCACTTTCACAGACGCGCAAGCATTCAGACGGCGTTCTTATTCAGTTATGTACCGCTTTCAAAGCACGGCTTTCAGCTGTCA
GACAGCTCTACAGTGTGCATCAAACAGTGTAAAGTGGCCTACATTCTAGTTTCCCAGCATTAAGTACAGGCTCAAGTTCAGGTTCATCCAGGGGACGGATTGCACATGAATGAAGTTAAG
CAGTGTATATTAATGCAGATACGATACAGTGTTGGTATATCTACAGGGGAACTATCCTAACTTATCAGGGGTCCTCAAGCCATGTGCACGGTGCTACCAGATGTGGAACCTCATAGGCAA
TGCATGCCAACATGTATGAGGATGCAGCCCTGGACGTCAGAGTGTCAGTTACGCAACCACATATGATAGCATGCAACCAACTGCTGCTTGAACATGGACACGAGCATCGACACGCCCACG
GCAGCGCATGCAAATGTACTGGGTATTCCTGCGTACTTGGGCACAACGTTGATGCATTTGCCATACAACGAAGGGACAACGGCGGTGTCACGGCCCCGATGCACCCGGCACCATGGACAG
CGAGGGGCAGCTCACATAGGTGATGCATCTGGCCGGCATGCGAGGTGAATGGATCTTGCACGTTCGTCTTCACACATGTCGTTGCAATGGTTGTAGCGGAGGACAGAGGTGACGAGCGAG
GGCAGCAACAAACCAAGAATGCACACTCACCCTGTATGGACACCAGATCCTACGAGTGGTTTCCTGTGGCAGACGTGTGCAAGGTGGCGAAGCGCACAGAAGGACTTGCTGTCGTCCAGC
ACATCGGCGGGCGCGAAGCGCAAGCAGAACGAGGGAGCTGGCCCCCGGCCGGCTTGGAAAGGTCATATGGGTACGTTGGTTGGTATCGAAAAATATGACAACTCACCGGTGTTCCACCAG
GCTCTTACGCCCTGTACACTCGTCTATTTCTCCCAGTAGTCATCTTGGTTCACGGTTTGTGCATGTCTGTTCATTCCGTGCCATCGTGTCCTTGAGTGGTCGGTCTTCTGGATTGCTCCA
GTAAGTAAAGTCGTGTGATTCATAGCCTTCAAGACTGACCGAATGGAGAGGAGAGGTACTCGTGGGTCAACCCAGGAGCATAGGTGTCGACGAGAGGACAGGCAAGTCGAGAGTGTAAAG
CGCCGGCTGGACTTGGCACGGGCGCGTTCAACGAGGTCGAACCGTGGGAATACTGAAGCTTGAAGGAGCTCCCTTCACCGAAACGCATGCAGGCAGTCTGCCACGATGCCCCATCCTCTT
ACCTGGCCCCTGTCGGTGGCATTGCTGTCGACATTCAAAAATGGAATTCGGTTTACACACAGTTGGCACGCATATCTTCAGGTTGCTCGGCGGAGGTGAGCACACCTCGGATGACAGCGT
CGACGAGCACGCAGATGCAAGAAGCGGTGAGCTTTCGTGGAATTGTTAGCCCGCATGGTATATAATGTAAGGTATGGTATTTGTTTGTGAAAGATGAGGTGTAAATACGCAATTTATATG
CGAAACAAAGGGGGTAGGGCTCAGAGGTTAGTGTCCATGCCTGTTTGTGCATGTCTGTACTTGATGAAATGCTTTTACTTGATGGTGACATCCTACTTGACGACGAAAGCCGCTCTTTGC
GTCTTTGTGGCGCTTGTGACAGCAGCAAGTATGAAAGCGCTGCAAGACGGTCTGGGATATTGCTGATGTACCCAGCCAGCTCTCCAGATGGCCTTGTTCCCGAACCGTTCCGTAAGTGCA
TACTTCTAGACAGACGTCACCGTACTTTCGCTCACATCTGCACCCAGACACACTGTCGATCAAATCATCAGCCGTGTCAATGATGCCGGACAGTTCGATGAGCTCGAGCTTGTATGGATG
CTTTCGGCGTAAGTCTCGAGATTGTGTGTCAGTTCATCCTATCTGACTGCCTGGCAGGCGCACTCCGTCGCGGCAGTCAACGACGTCGATCCGACTGTCCAAGGTTTGCCCTTCGACTCG
ACGCCCGGAATCTTCGACTCCCAGTTCTTCGTCGAGACTCAGCTCCGTGGCACCGCGTTTCCCGGGTCTGGCGGCAACCAGGGTGAGGTCGAGTCGCCTCTTCCCGGCGAGTTCCGCATC
CAGTCGGACCACACCATCGCCCGCGACTCGCGCACGGCGTGTGAATGGCAGTCCTTCGTCAACAACCAGTCGAAGCTCGTCTCTGACTTCCAGTTCATCTTCCTCGCCCTCACCCAGCTC
GGCCAGGACCCGAACGCGATGACCGACTGCTCGGATGTTATCCCACAGTCGAAGCCCATCCCCGGCAACCTTCCGTTCTCGTTCTTCCCCGCAGGCAAGACCATAAACGATGTTGAGCAG
GCGGTGCGTGATCTACATATTCGTAGGCGCGATGATCCTGATCTTTGCCTCGCAGTGTGCGCGGAGACCCCATTCCCCACACTCACGACCCTCCCTGGACCCGAGACCTCCGTCCAGCGC
ATGTGAGTACACAATCTAGGTTCAGCCCAGAAGCACGCACTGACAGCCTTTAGTCTCCGCCGCCCCCAGGTGCTTAA

Retrieve as FASTA

CDS►
Send to BLAST