Entry information : SmPrx22-2_67 (SmPrx22b_67)
Entry ID 6993
Creation 2009-12-18 (Christophe Dunand)
Last sequence changes 2009-12-18 (Christophe Dunand)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2011-09-04 (Qiang Li)
Peroxidase information: SmPrx22-2_67 (SmPrx22b_67)
Name (synonym) SmPrx22-2_67 (SmPrx22b_67)
Class Class III peroxidase    [Orthogroup: Prx047]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmPrx22-2_67
start..stop
S start..stop
SmPrx22-1_79 668 0 1..338 1..341
SmPrx02-1_122 361 5e-125 40..337 29..327
SmPrx02-2_114 358 1e-123 40..337 29..327
SmPrx01-1_122 318 4e-108 21..338 5..322
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 28879..28994 116 N° 2 29406..29535 130 N° 3 29589..29783 195 N° 4 29855..30020 166
N° 5 30102..30511 410  
join(28879..28994,29406..29535,29589..29783,29855..30020,30102..30511)


exon

Literature and cross-references SmPrx22-2_67 (SmPrx22b_67)
DNA ref. Phytozome 12:   scaffold_67 (28879..30511)
mRNA ref. JGI transcript:   122100 [Incorrect prediction]
Protein sequence: SmPrx22-2_67 (SmPrx22b_67)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   338 (305)
PWM (Da):   %s   36951.87 (33417.1)  
PI (pH):   %s   8.35 (8.39) Peptide Signal:   %s   cut: 34 range:34-338
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MHLICGGGGGGVFFHRSCALWLLVILLPQCWVASQYEGEGFYDQSCPSAESVVRRTMVDSFRRNPLLAAGILRLFFHDCFVGCDGSVLLDRKPGGPIPEKESDVNNNSITGFRVIDDAKKRLERMCPGVVSCSDILALAARDAVWISGGPRWSVPTGRLDGRVSLATEADNEIPPPDLRIRDLRKAFLAKGLNTHDVVTLSGAHTIGRAHCPAFEDRLYNFSATNAPDPTVNLSLLDSLQKICPRVGNTTFTVSLDRQTQVLFDNSYYVQILASNGLLQTDQQLLFDASTAGLVRAYAADSSMFFRAFAKAMIKLSRVGLKAPGEGEIRKHCRRVNP

Retrieve as FASTA  
Remarks Complete sequence from genomic (3 introns and extra 5' intron). No ESTs. Incorrect transcript prediction from JGI (incorrect PS and splicing error for intron 3). PS prediction with an extra intron.
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCATTTGATCTGTGGTGGTGGTGGTGGTGGTGTGTTCTTCCACAGATCTTGCGCATTGTGGCTGCTCGTAATTCTCCTCCCGCAATGTTGGGTGGCTTCTCAATACGAAGGAGAGCAA
GGGATGTTCTACTCCAACAATGAACAGGGAATGTTTTATCGTGATGATGATCAATCATGGTCCGGTGGTGCATTTCAAGGAGGAGCGTTTCGAGACGATCGTGAGCGGTACTGGCGGGAG
TCAAATCCAGACCCGTATCCAGATCCAAACCCCTCGCAACTTCAGCAGCCCGATCAGGTTGTGTCTCAGCAACAGATTCCGAATCAACCTCCGCAACAGATTCCGCAGCAGGTGCAGAAT
CCGAACCAGTTTCCGCAGCAGGTTCAGAACCAGAACCCAAATCAGCCGCAAGTTCAGAACCAGAACCAGAATCAACAACAAGTTCAGAGCCAGAACCAGAATCAACAACAAGCTCAGAAC
CAGAACCAGAATCAACAACAAGCTCAGAACCAGAACCAAGTGGTCAGAGGATTTTATGACCAGAGCTGCCCATCAGCGGAATCCGTCGTCCGGAGGACCATGGTGGACAGCTTCCGGCGG
AACCCGCTGCTGGCCGCCGGAATCCTCCGGCTCTTCTTCCATGACTGCTTTGTCCGA
GTAAGTTGGAGACTTTTGGAAAAGATTGATCGATCTGTAACTCGACAATGCAGGGTTGTGATG
GATCGGTGCTGCTGGATCGAAAACCCGGCGGACCCATCCCCGAAAAGGAGAGCGACGTGAACAACAACTCCATCACTGGCTTCCGGGTGATTGACGACGCCAAGAAGCGCTTGGAGCGGA
TGTGCCCGGGAGTCGTGTCGTGCTCGGACATCCTCGCACTGGCTGCTCGAGACGCCGTTTGGATC
GTAAGTCCTGATAGAAAAGAAAACTTTCCATTTCCTTTTAGTGACACGAAATGCC
TTCCGGGTTAGAGCAGAGTGGAGGACCTCGCTGGAGTGTCCCGACGGGACGTCTGGACGGGCGAGTCTCGCTGGCGACGGAAGCCGATAACGAGATTCCACCACCGGATCTCCGAATCCG
GGACTTGAGAAAGGCATTTCTCGCCAAGGGCCTCAACACCCACGACGTCGTCACCCTCTCAG
GCTAGTAAAACATTTTCTCTTTAATTATACAGCGTTTGCCTAGTTTCGGCATTTGCTA
AAGATTGTAAAGTTCTTTCACAGGCGCGCACACTATCGGTCGAGCACACTGCCCCGCCTTTGAGGACCGCCTCTACAACTTCTCCGCAACAAACGCGCCAGATCCCACCGTCAATCTGTC
GCTGCTGGACTCGCTCCAAAAGATTTGCCCCAGGGTTGGGAATACCACCTTCACGGTGAGCCTGGATCGCCAGACCCAAGTCCTGTTTGACAACAGCTACTACGTCCAGATCCTGGCCAG
CAATGGGCTCCTCCAGACCGATCAGCAGCTCCTCTTCGACGCCTCCACCGCGGGGTTGGTGCGAGCGTACGCCGCCGATTCGTCCATGTTCTTCCGCGCCTTCGCCAAGGCCATGATCAA
GCTCAGCAGGGTGGGTTTGAAAGCTCCTGGCGAGGGCGAGATCCGGAAGCACTGCCGTCGTGTAAATCCATGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCATTTGATCTGTGGTGGTGGTGGTGGTGGTGTGTTCTTCCACAGATCTTGCGCATTGTGGCTGCTCGTAATTCTCCTCCCGCAATGTTGGGTGGCTTCTCAATACGAAGGAGAAGGA
TTTTATGACCAGAGCTGCCCATCAGCGGAATCCGTCGTCCGGAGGACCATGGTGGACAGCTTCCGGCGGAACCCGCTGCTGGCCGCCGGAATCCTCCGGCTCTTCTTCCATGACTGCTTT
GTCCGA
GGTTGTGATGGATCGGTGCTGCTGGATCGAAAACCCGGCGGACCCATCCCCGAAAAGGAGAGCGACGTGAACAACAACTCCATCACTGGCTTCCGGGTGATTGACGACGCCAAG
AAGCGCTTGGAGCGGATGTGCCCGGGAGTCGTGTCGTGCTCGGACATCCTCGCACTGGCTGCTCGAGACGCCGTTTGGATC
AGTGGAGGACCTCGCTGGAGTGTCCCGACGGGACGTCTG
GACGGGCGAGTCTCGCTGGCGACGGAAGCCGATAACGAGATTCCACCACCGGATCTCCGAATCCGGGACTTGAGAAAGGCATTTCTCGCCAAGGGCCTCAACACCCACGACGTCGTCACC
CTCTCAG
GCGCGCACACTATCGGTCGAGCACACTGCCCCGCCTTTGAGGACCGCCTCTACAACTTCTCCGCAACAAACGCGCCAGATCCCACCGTCAATCTGTCGCTGCTGGACTCGCTC
CAAAAGATTTGCCCCAGGGTTGGGAATACCACCTTCACGGTGAGCCTGGATCGCCAGACCCAAGTCCTGTTTGACAACAGCTACTACGTCCAGATCCTGGCCAGCAATGGGCTCCTCCAG
ACCGATCAGCAGCTCCTCTTCGACGCCTCCACCGCGGGGTTGGTGCGAGCGTACGCCGCCGATTCGTCCATGTTCTTCCGCGCCTTCGCCAAGGCCATGATCAAGCTCAGCAGGGTGGGT
TTGAAAGCTCCTGGCGAGGGCGAGATCCGGAAGCACTGCCGTCGTGTAAATCCATGA

Retrieve as FASTA