1. Browse the Database
  2. View Redoxidase
Entry information : SmPrx08-2_107 (SmPrx08b_107)
Entry ID 7000
Creation 2009-10-02 (Paula Nunes)
Last sequence changes 2009-10-02 (Paula Nunes)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: SmPrx08-2_107 (SmPrx08b_107)
Name (synonym) SmPrx08-2_107 (SmPrx08b_107)
Class Class III peroxidase    [Orthogroup: Prx110]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmPrx08-2_107
start..stop		 S start..stop
SmPrx08-1_40 659 0 1..326 1..328
CmichPrx06 394 3.39e-138 6..326 7..329
ApuncPrx04 385 1.73e-134 29..326 70..371
GbPrx24 384 1.78e-134 27..326 28..328
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7000' 'complement(join(527662..528068,528550..528715,528992..529180,529283..529501))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 529283..529501 217 N° 2 528992..529180 187 N° 3 528550..528715 164 N° 4 527662..528068 405
complement(join(527662..528068,528550..528715,528992..529180,529283..529501))


exon

Literature and cross-references SmPrx08-2_107 (SmPrx08b_107)
DNA ref. Phytozome 12:   scaffold_107 (529501..527662)
mRNA ref. JGI transcript:   131487
Protein sequence: SmPrx08-2_107 (SmPrx08b_107)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   326 (299)
PWM (Da):   %s   35154.96 (32309.3)  
PI (pH):   %s   8.21 (7.72) Peptide Signal:   %s   cut: 28 range:28-326
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MLSIGAALAKIWLVIALGASIWPVSRQQQLDSNLYRSRCPALEPI
SATAVARQIRKDPTSAAPLVRMFFHDCFGCDASVLLDSTKNSTAEKEATPNVSLRQFDVLEEIKTQVEAKCPGVVSCADIVALAARDATVQTGGPSWNVEFGRRDGRSSSDAMAAAHLPSSRSSAQPLIDSFAAVGLSIRDLVTLSGA
HTFGRAHCTQVARRFYAFNNASGIDPTLDSSYAQRLRRLCPQPLDAHGMVDLDPITPNVFDTLYYQGLLMNLGIFSSDSALVLDNRTKVFVQEYAVNPVSFVQQFPGAMVRLGRIGVLTG
SQGEIRKRCNVVN

Retrieve as FASTA  
Remarks Complete sequence from genomic (3 introns). No EST
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCTATCGATCGGAGCGGCATTGGCGAAGATTTGGCTGGTAATCGCGCTGGGAGCGTCGATCTGGCCAGTGTCCCGGCAGCAGCAGCTGGATTCCAATTTATATCGCTCGCGATGCCCC
GCGCTGGAGCCGATCTCCGCCACGGCCGTGGCGCGGCAGATTAGGAAGGATCCGACCTCCGCCGCGCCGCTCGTCCGGATGTTCTTCCACGATTGCTTCGTCCAGGCAAGGCGCACTCGT
ATTTCGATCGATCGATCGATCGATCGGCGAAATATTTTGGTCTGACATGTTTTGCGCGTGTTCTTGTTTCTTTCTTGACAGGGGGTTGCGATGCGTCAGTGCTACTAGATTCGACCAAGA
ACAGCACGGCCGAGAAGGAGGCAACGCCAAACGTATCGCTGCGCCAATTCGATGTCCTGGAGGAGATCAAGACGCAGGTGGAGGCCAAATGTCCGGGAGTGGTTTCTTGCGCCGACATTG
TGGCGCTGGCCGCTAGAGATGCCACAGTCCAGGTACACGAATCGATTCTAGCTCATCGATCGAAATTCGCGAAGATTTCCCTCTTCTTGTTCTTGGTTCTCTTTCTCTCTCTTGCTCGAA
ATCTCACGCTCGGGAAAAGGGAAAGGATGATTCCGTCGTGCTTCTCGTGATGCCGGCCAAATTCATCTCTCACGCGCTCGATTTCTTGGAAAGATCGTTCCATTCCTTGCCTGCATTGAT
TGATTGTCATGAGCATCGGCATCGCAGCTTTAAAAATTCACTCTTCTTCCTCGTTTGCTCCTTGGCAGACACTGGAGGACCGAGCTGGAACGTGGAATTCGGGCGGAGGGATGGGCGGAG
CTCGTCCGATGCGATGGCTGCCGCGCATTTGCCGTCGTCGCGATCCAGCGCTCAGCCTCTCATCGACAGCTTCGCGGCGGTGGGGCTGTCAATCCGGGATCTGGTGACTCTATCAGGTAC
TCTGCTCTTCCCCTGGCTCGTGATGTCATACTCCATGTCATAGCCCTGGCTTTTACCCTGGGTTTTGGTTCCCGTCATGTCATAGCTCCTGGTTTTTTGATCCCCGAACATGTCATAAGC
CCCCAGGTTCTAGTCCACGTGTTCTTAAAGTTGCTGTGCCCGAATCCTTTGTCCTGTCTTCTTCACTGCAATGCCTGACTGAATTCTCGCTGTCACTAGTTTACCACTGTCATCCACTGG
AAGACATTGGAGAGTTCTGTATGAAGTAAATGTTTGTTTCTTATCCCTTCGCCACTCATTGTTCTACTCGATTTGACTGGCATTTGTTCTGGAGCTCTGGAGCTCTGCGTAGCGTAGGAT
CTTCTTTGGACTAGACAATCCAAGTTGCGTGACTTGATCGACTTGATCGATCGATCGAACGCGCTCCTGGAATGGTTTTTTATTCTCGTCCTTTCTCATACTTTCTCTCTTTTGCAGGAG
AGCTCATACTTTTGGACGAGCGCACTGCACCCAAGTGGCGCGTCGCTTCTATGCTTTCAACAACGCCAGCGGCATCGATCCCACGCTCGATTCCAGCTACGCGCAGCGGCTCCGGCGGCT
GTGCCCGCAGCCGTTGGATGCCCACGGAATGGTCGACCTGGATCCAATCACGCCCAACGTCTTCGACACGCTCTACTACCAGGGACTGCTCATGAACCTGGGGATATTCTCCTCCGATTC
CGCGCTCGTTCTGGACAACCGGACGAAGGTGTTCGTGCAGGAATATGCGGTCAACCCAGTCTCGTTCGTTCAACAGTTTCCGGGCGCCATGGTCAGACTTGGTCGCATTGGTGTGTTGAC
CGGCAGTCAAGGTGAGATTAGAAAAAGATGTAACGTGGTCAACTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCTATCGATCGGAGCGGCATTGGCGAAGATTTGGCTGGTAATCGCGCTGGGAGCGTCGATCTGGCCAGTGTCCCGGCAGCAGCAGCTGGATTCCAATTTATATCGCTCGCGATGCCCC
GCGCTGGAGCCGATCTCCGCCACGGCCGTGGCGCGGCAGATTAGGAAGGATCCGACCTCCGCCGCGCCGCTCGTCCGGATGTTCTTCCACGATTGCTTCGGTTGCGATGCGTCAGTGCTA
CTAGATTCGACCAAGAACAGCACGGCCGAGAAGGAGGCAACGCCAAACGTATCGCTGCGCCAATTCGATGTCCTGGAGGAGATCAAGACGCAGGTGGAGGCCAAATGTCCGGGAGTGGTT
TCTTGCGCCGACATTGTGGCGCTGGCCGCTAGAGATGCCACAGTCCAGACTGGAGGACCGAGCTGGAACGTGGAATTCGGGCGGAGGGATGGGCGGAGCTCGTCCGATGCGATGGCTGCC
GCGCATTTGCCGTCGTCGCGATCCAGCGCTCAGCCTCTCATCGACAGCTTCGCGGCGGTGGGGCTGTCAATCCGGGATCTGGTGACTCTATCAGGAGCTCATACTTTTGGACGAGCGCAC
TGCACCCAAGTGGCGCGTCGCTTCTATGCTTTCAACAACGCCAGCGGCATCGATCCCACGCTCGATTCCAGCTACGCGCAGCGGCTCCGGCGGCTGTGCCCGCAGCCGTTGGATGCCCAC
GGAATGGTCGACCTGGATCCAATCACGCCCAACGTCTTCGACACGCTCTACTACCAGGGACTGCTCATGAACCTGGGGATATTCTCCTCCGATTCCGCGCTCGTTCTGGACAACCGGACG
AAGGTGTTCGTGCAGGAATATGCGGTCAACCCAGTCTCGTTCGTTCAACAGTTTCCGGGCGCCATGGTCAGACTTGGTCGCATTGGTGTGTTGACCGGCAGTCAAGGTGAGATTAGAAAA
AGATGTAACGTGGTCAACTGA

Retrieve as FASTA