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Entry information : SmPrx35-2_170 (SmPrx35b_170)
Entry ID 7001
Creation 2009-10-02 (Paula Nunes)
Last sequence changes 2011-01-25 (Toky Ramarohetra (Scipio))
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: SmPrx35-2_170 (SmPrx35b_170)
Name (synonym) SmPrx35-2_170 (SmPrx35b_170)
Class Class III peroxidase    [Orthogroup: Prx174]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmPrx35-2_170
start..stop		 S start..stop
SmPrx35-1_84 669 0 1..328 1..328
SmPrx10-2_25 383 3.95e-134 8..328 4..323
SmPrx10-1_3 382 6.82e-134 8..328 4..323
SmPrx70-1_38 357 8.02e-124 11..328 7..326
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7001' 'join(58717..58935,59007..59201,59270..59435,59500..59906)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 58717..58935 217 N° 2 59007..59201 193 N° 3 59270..59435 164 N° 4 59500..59906 405
join(58717..58935,59007..59201,59270..59435,59500..59906)


exon

Literature and cross-references SmPrx35-2_170 (SmPrx35b_170)
DNA ref. Phytozome 12:   scaffold_170 (58717..59906)
mRNA ref. JGI transcript:   137572 [Incorrect splicing]
Protein sequence: SmPrx35-2_170 (SmPrx35b_170)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   328 (303)
PWM (Da):   %s   34867.77 (32168.2) Transmb domain:   %s   o10-32i
PI (pH):   %s   7.22 (7.68) Peptide Signal:   %s   cut: 26 range:26-328
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MLLPLLLLLECIVLISLPRLGSIDAQKIQVGFYSTTCPQAESIVK
NVVSSAVSANRGLAAGLLRLQFHDCFVQGCDASVLIDSTPSTKGGAEKDAPPNKTLRGFEVIDAAKAQVEAKCPGTVSCADILAFATRDAVVQVGGPRWDVPAGRRDGRISSAAEATSSLPDPSFSINQLTQRFAAKGLSQDNMITLSGAHTIGVAHCKTFINRLYGFSSSADTDPSLDPTFAQSLKAQCPRENPNPNTVVSLDPTPNTFDNSYYSNLALGRGLLASDELLFTDGSTTLNVALNSFFGSTWLQKFPDAMVKMSLIEVK
TGSQGEIRKNCRRIN

Retrieve as FASTA  
Remarks Complete sequence from genomic (3 introns). No EST. Incorrect transcript prediction from JGI (incorrect splicing intron 3).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCTGCTGCCACTGCTGCTGCTACTCGAATGCATTGTCTTGATTTCGCTGCCGCGACTGGGCAGCATTGATGCGCAGAAAATCCAAGTTGGATTCTACTCCACGACGTGTCCGCAGGCC
GAATCAATCGTCAAGAATGTGGTCAGCAGCGCGGTGTCGGCCAACCGAGGATTGGCCGCTGGACTTCTTCGCTTGCAATTCCACGACTGCTTCGTCCAGAGGTTGCCAAACTTCTCCCAG
TTTCTTATACTGAGCTTCCTCTGTTGTCTCACTTCTCCTCCTGGATGGTCAGGGATGCGATGCTTCCGTGCTGATTGATTCCACGCCGAGCACCAAAGGTGGAGCCGAGAAGGACGCCCC
GCCAAACAAGACGCTCCGGGGGTTCGAGGTGATTGACGCCGCAAAGGCGCAGGTCGAGGCAAAGTGCCCGGGAACAGTCTCGTGCGCGGACATTCTCGCGTTTGCCACGCGCGATGCAGT
CGTCCAGAGGTCGATCGATTGCTAAGTTTGCTGGAGAGAATCGACAGAAACTCAATCGCGTTTTTCTTGTGCCACAGGTTGGAGGGCCGCGCTGGGACGTTCCCGCGGGACGACGAGACG
GGCGAATCTCCTCGGCAGCCGAGGCTACGTCCAGCTTGCCCGACCCTTCTTTCTCCATCAATCAGCTCACACAGCGCTTCGCTGCCAAAGGCCTCTCGCAAGACAACATGATAACTCTCT
CAGAGGCAAGACACACCATCTTTCTTCCTTCCAGTGTTTCCATCGAGAATCCATAGCTTCATCTTTCAGGAGCTCACACCATCGGAGTGGCACACTGCAAGACTTTCATCAACCGGCTGT
ATGGATTCAGCAGCAGTGCCGACACGGACCCTTCTCTCGATCCAACCTTCGCGCAGAGCCTCAAAGCCCAATGCCCGCGAGAGAATCCCAATCCCAACACCGTCGTCAGCCTCGACCCCA
CGCCCAACACCTTCGACAACAGCTACTACTCCAACCTCGCGCTGGGCAGGGGATTGCTCGCCTCGGACGAGCTCCTCTTCACGGACGGATCCACGACGCTCAATGTGGCTCTCAATTCCT
TCTTTGGATCAACTTGGCTCCAGAAATTCCCCGACGCGATGGTGAAGATGAGCCTCATCGAAGTCAAGACGGGGAGCCAAGGCGAGATCCGGAAGAACTGCCGGAGGATCAACTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCTGCTGCCACTGCTGCTGCTACTCGAATGCATTGTCTTGATTTCGCTGCCGCGACTGGGCAGCATTGATGCGCAGAAAATCCAAGTTGGATTCTACTCCACGACGTGTCCGCAGGCC
GAATCAATCGTCAAGAATGTGGTCAGCAGCGCGGTGTCGGCCAACCGAGGATTGGCCGCTGGACTTCTTCGCTTGCAATTCCACGACTGCTTCGTCCAGGGATGCGATGCTTCCGTGCTG
ATTGATTCCACGCCGAGCACCAAAGGTGGAGCCGAGAAGGACGCCCCGCCAAACAAGACGCTCCGGGGGTTCGAGGTGATTGACGCCGCAAAGGCGCAGGTCGAGGCAAAGTGCCCGGGA
ACAGTCTCGTGCGCGGACATTCTCGCGTTTGCCACGCGCGATGCAGTCGTCCAGGTTGGAGGGCCGCGCTGGGACGTTCCCGCGGGACGACGAGACGGGCGAATCTCCTCGGCAGCCGAG
GCTACGTCCAGCTTGCCCGACCCTTCTTTCTCCATCAATCAGCTCACACAGCGCTTCGCTGCCAAAGGCCTCTCGCAAGACAACATGATAACTCTCTCAGGAGCTCACACCATCGGAGTG
GCACACTGCAAGACTTTCATCAACCGGCTGTATGGATTCAGCAGCAGTGCCGACACGGACCCTTCTCTCGATCCAACCTTCGCGCAGAGCCTCAAAGCCCAATGCCCGCGAGAGAATCCC
AATCCCAACACCGTCGTCAGCCTCGACCCCACGCCCAACACCTTCGACAACAGCTACTACTCCAACCTCGCGCTGGGCAGGGGATTGCTCGCCTCGGACGAGCTCCTCTTCACGGACGGA
TCCACGACGCTCAATGTGGCTCTCAATTCCTTCTTTGGATCAACTTGGCTCCAGAAATTCCCCGACGCGATGGTGAAGATGAGCCTCATCGAAGTCAAGACGGGGAGCCAAGGCGAGATC
CGGAAGAACTGCCGGAGGATCAACTAG

Retrieve as FASTA