Entry information : SmPrx16-1_0 (SmPrx16a_0)
Entry ID 7015
Creation 2009-10-07 (Paula Nunes)
Last sequence changes 2009-10-07 (Paula Nunes)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: SmPrx16-1_0 (SmPrx16a_0)
Name (synonym) SmPrx16-1_0 (SmPrx16a_0)
Class Class III peroxidase    [Orthogroup: Prx066]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmPrx16-1_0
start..stop
S start..stop
SmPrx16-2_8 635 0 1..325 1..325
ApuncPrx18 370 6e-129 23..325 30..333
GbPrx55 346 9e-120 23..312 22..310
PpaPrx24 314 7e-107 13..325 13..330
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 4888423..4888641 219 N° 2 4888757..4888948 192 N° 3 4889010..4889175 166 N° 4 4889231..4889631 401
join(4888423..4888641,4888757..4888948,4889010..4889175,4889231..4889631)


exon

Literature and cross-references SmPrx16-1_0 (SmPrx16a_0)
DNA ref. Phytozome 12:   scaffold_0 (4888423..4889631)
mRNA ref. JGI transcript:   229953 [3' end]
Protein sequence: SmPrx16-1_0 (SmPrx16a_0)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   325
PWM (Da):   %s   35536.69  
PI (pH):   %s   4.68
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MELVVRKAVAALVVSVVVTLVHVEAQLVVGYYEQNGCPMAEEIVKKVLTAAVARDQSIAASLLRLHFHDCFVQGCDGSVLLDPQNGFPATEKQAVPNFSLRGYNVVDAVKQALEQACPETVSCADILAIAARDAVSLSGGGTWPVETGRKDGVISLRTEAEDLLPPTNENSEELTQRFLDVGLTQDEMITLSGAHTIGRAHCVSFSQRLYNFSPEFDTDPNLDAAYAGKLKQACPRNFDPRTVVPLDPVTPSQFDNRYYSNLVNNMGLMISDQTLHSDMLTQFSSQSNAEDENMWQFKFANAMVRMGAINVKAEGEIRKNCRLRN

Retrieve as FASTA  
Remarks Complete sequence from genomic (3 introns). Incorrect prediction from JGI (PS is missing). No EST
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAGCTCGTCGTCCGCAAAGCAGTAGCAGCATTGGTGGTGAGTGTTGTTGTCACGCTTGTCCATGTGGAAGCTCAGCTCGTTGTTGGATACTACGAGCAAAATGGATGTCCCATGGCC
GAGGAGATTGTCAAGAAAGTTCTCACCGCGGCCGTGGCACGAGACCAATCCATCGCTGCTTCGTTGCTTCGTCTCCACTTCCACGACTGTTTCGTCCAG
GTCCGTGAGCAACTTCTGTCT
CGCCTTTCATCTCGGCAGCATCGTTATCGATTTGAAAAATCCGTAGTCACTGAAAGAATTCTTGCTCACCAATCGCCGCCAACTTGATGAACAGGGCTGTGACGGGTCCGTTCTCTTGGA
TCCACAAAACGGCTTCCCCGCCACGGAGAAACAAGCTGTCCCAAACTTCTCGCTCCGAGGATACAACGTCGTCGACGCAGTAAAGCAAGCTCTCGAACAAGCGTGTCCAGAGACTGTCTC
ATGTGCTGACATTCTCGCTATAGCAGCCCGAGATGCTGTTTCCCTG
GTAAGAACTCCTGCTTCGTAAGATTTCTTTCGAGAACTTGACGAAGAATGCTTACCACCAGTCTGGAGGAGGAA
CTTGGCCAGTGGAAACAGGACGTAAAGATGGTGTTATTTCACTCAGGACCGAAGCGGAGGACCTTCTTCCTCCCACGAACGAAAACTCTGAAGAGTTAACCCAGAGGTTCCTTGATGTTG
GTCTGACTCAAGATGAGATGATCACCTTGTCCG
GTAAAGTTTCATAAGTTTGCTCTCGGCCTGCCACTGATCTTCTTCCAACTTCCAGGAGCACATACGATAGGACGAGCTCACTGTGTC
TCTTTCAGCCAGAGGCTCTATAACTTCAGCCCGGAGTTTGATACTGATCCGAATCTCGACGCTGCTTACGCCGGGAAACTAAAGCAGGCCTGTCCGAGGAACTTTGATCCGAGAACTGTC
GTGCCGCTGGATCCTGTCACCCCTTCCCAGTTTGACAATCGCTACTACTCCAACCTCGTCAACAACATGGGGCTCATGATCTCAGATCAGACGCTCCACAGCGACATGCTCACCCAGTTT
TCTTCCCAGTCAAACGCCGAGGATGAAAACATGTGGCAGTTTAAGTTCGCAAACGCCATGGTCCGGATGGGTGCTATTAACGTCAAGGCTGAAGGCGAGATTCGCAAAAACTGCCGACTG
AGGAACTAG

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAGCTCGTCGTCCGCAAAGCAGTAGCAGCATTGGTGGTGAGTGTTGTTGTCACGCTTGTCCATGTGGAAGCTCAGCTCGTTGTTGGATACTACGAGCAAAATGGATGTCCCATGGCC
GAGGAGATTGTCAAGAAAGTTCTCACCGCGGCCGTGGCACGAGACCAATCCATCGCTGCTTCGTTGCTTCGTCTCCACTTCCACGACTGTTTCGTCCAG
GGCTGTGACGGGTCCGTTCTC
TTGGATCCACAAAACGGCTTCCCCGCCACGGAGAAACAAGCTGTCCCAAACTTCTCGCTCCGAGGATACAACGTCGTCGACGCAGTAAAGCAAGCTCTCGAACAAGCGTGTCCAGAGACT
GTCTCATGTGCTGACATTCTCGCTATAGCAGCCCGAGATGCTGTTTCCCTG
TCTGGAGGAGGAACTTGGCCAGTGGAAACAGGACGTAAAGATGGTGTTATTTCACTCAGGACCGAAGCG
GAGGACCTTCTTCCTCCCACGAACGAAAACTCTGAAGAGTTAACCCAGAGGTTCCTTGATGTTGGTCTGACTCAAGATGAGATGATCACCTTGTCCG
GAGCACATACGATAGGACGAGCT
CACTGTGTCTCTTTCAGCCAGAGGCTCTATAACTTCAGCCCGGAGTTTGATACTGATCCGAATCTCGACGCTGCTTACGCCGGGAAACTAAAGCAGGCCTGTCCGAGGAACTTTGATCCG
AGAACTGTCGTGCCGCTGGATCCTGTCACCCCTTCCCAGTTTGACAATCGCTACTACTCCAACCTCGTCAACAACATGGGGCTCATGATCTCAGATCAGACGCTCCACAGCGACATGCTC
ACCCAGTTTTCTTCCCAGTCAAACGCCGAGGATGAAAACATGTGGCAGTTTAAGTTCGCAAACGCCATGGTCCGGATGGGTGCTATTAACGTCAAGGCTGAAGGCGAGATTCGCAAAAAC
TGCCGACTGAGGAACTAG

Retrieve as FASTA