Entry information : SmPrx33-1_84 (SmPrx33a_84)
Entry ID 7030
Creation 2009-10-12 (Paula Nunes)
Last sequence changes 2009-10-12 (Paula Nunes)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2011-02-01 (Christophe Dunand)
Peroxidase information: SmPrx33-1_84 (SmPrx33a_84)
Name (synonym) SmPrx33-1_84 (SmPrx33a_84)
Class Class III peroxidase    [Orthogroup: Prx002]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmPrx33-1_84
start..stop
S start..stop
SmPrx33-2_131 705 0 1..345 1..345
CmichPrx01 396 2e-138 42..342 60..361
SmPrx37-2_44 375 3e-130 46..342 45..342
SmPrx37-1_2 374 3e-130 46..342 43..340
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 150610..150870 261 N° 2 150347..150538 192 N° 3 149705..150289 585  
complement(join(149705..150289,150347..150538,150610..150870))


exon

Literature and cross-references SmPrx33-1_84 (SmPrx33a_84)
DNA ref. Phytozome 12:   scaffold_84 (150870..149705)
mRNA ref. JGI transcript:   138810 [Incorrect splicing]   235371 [Incorrect splicing]
EST ref. GenBank:   FE447752.1 [3' end]
Protein sequence: SmPrx33-1_84 (SmPrx33a_84)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   345
PWM (Da):   %s   37267.25  
PI (pH):   %s   8.02
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MIPRPGVGGFPFPAGRGFPFPGGRPFPFPGGATSAEMGIAVLRPGFYKEKCPAAESIVKEVLQQAVEKDSRTAANILRLQFHDCFVLGCDASILLDDTHTFKGEKTANPNRNSARGFEVIDEIKAALEKECEGVVSCADVLAIAARDSVVLTGGPSWEVHLGRRDSLTASRSLANRDIPPPNSTLPQLIAAFAKKGLSIVDLVALTGSHTIGVSRCASFRQRLYNFAGTRRPDPSIDPALLRSLEHICPPKGNAQETTPLDIVTPTKFDNHFFVDLELHKGVLTSDQVLFAPYAPTSALVTAFAYDQAKFFQEFVASMVRMAAIKPLLGSEGQIRKECRFVNHKY*

Retrieve as FASTA  
Remarks Complete sequence from genomic (introns 1 and 2) and 1 EST. Incorrect transcript from JGI. Also found in scaffold_369 (100% at DNA level)
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGATACCGAGGCCTGGCGTGGGAGGCTTTCCATTCCCAGCAGGACGGGGTTTTCCATTCCCAGGAGGACGACCATTTCCATTTCCCGGTGGTGCTACTTCTGCGGAGATGGGAATTGCT
GTGTTGCGGCCTGGCTTCTACAAGGAGAAGTGCCCCGCTGCCGAGTCTATCGTGAAGGAAGTCTTGCAGCAGGCCGTGGAAAAGGATTCCAGAACTGCTGCAAACATTCTCAGGCTTCAG
TTTCACGATTGTTTCGTTCTG
GTAAGTTGTTGCATTCTTTTTTCTTTGTTTTTCTTTGTTTTTTATGAGAATAAGATGTGAATTTCTTGCAGGGATGTGATGCTTCCATACTTCTGGACG
ATACGCATACTTTCAAAGGAGAAAAGACCGCCAATCCCAACAGGAACTCGGCTCGTGGCTTCGAAGTCATTGACGAGATCAAGGCAGCTCTGGAGAAGGAATGCGAGGGTGTTGTTTCTT
GTGCCGACGTTCTCGCCATTGCTGCACGGGACTCGGTCGTCCTG
GTACGTACTTCGATACTAATCTTTGATCTCACTTCTTTTCTGTGTGGCATGAATCAGACTGGAGGCCCGTCGTGGG
AAGTTCATCTTGGTCGTCGAGACAGCCTGACTGCGAGCCGCAGCCTGGCCAACAGAGACATCCCGCCTCCCAACTCGACGCTTCCGCAGCTCATCGCCGCATTTGCCAAGAAGGGCCTGT
CCATCGTGGACTTGGTGGCACTGACGGGCTCTCACACCATTGGCGTGTCACGCTGCGCCAGCTTCCGGCAGCGCCTCTACAACTTTGCGGGAACTCGTCGGCCAGATCCGAGCATCGACC
CGGCGCTCCTCCGCAGCCTCGAGCACATTTGTCCTCCCAAAGGCAACGCGCAGGAGACGACGCCTCTGGACATCGTCACTCCCACCAAGTTTGACAATCACTTCTTCGTCGATCTGGAGC
TTCACAAGGGTGTTCTTACGTCGGACCAGGTGCTGTTTGCGCCGTATGCTCCCACCAGCGCACTGGTTACGGCATTTGCCTACGACCAGGCAAAGTTCTTCCAGGAGTTTGTAGCGTCCA
TGGTGAGGATGGCTGCCATCAAGCCGCTGCTGGGATCGGAGGGCCAGATCAGGAAGGAGTGCCGGTTCGTCAATCACAAGTACTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGATACCGAGGCCTGGCGTGGGAGGCTTTCCATTCCCAGCAGGACGGGGTTTTCCATTCCCAGGAGGACGACCATTTCCATTTCCCGGTGGTGCTACTTCTGCGGAGATGGGAATTGCT
GTGTTGCGGCCTGGCTTCTACAAGGAGAAGTGCCCCGCTGCCGAGTCTATCGTGAAGGAAGTCTTGCAGCAGGCCGTGGAAAAGGATTCCAGAACTGCTGCAAACATTCTCAGGCTTCAG
TTTCACGATTGTTTCGTTCTG
GGATGTGATGCTTCCATACTTCTGGACGATACGCATACTTTCAAAGGAGAAAAGACCGCCAATCCCAACAGGAACTCGGCTCGTGGCTTCGAAGTCATT
GACGAGATCAAGGCAGCTCTGGAGAAGGAATGCGAGGGTGTTGTTTCTTGTGCCGACGTTCTCGCCATTGCTGCACGGGACTCGGTCGTCCTG
ACTGGAGGCCCGTCGTGGGAAGTTCAT
CTTGGTCGTCGAGACAGCCTGACTGCGAGCCGCAGCCTGGCCAACAGAGACATCCCGCCTCCCAACTCGACGCTTCCGCAGCTCATCGCCGCATTTGCCAAGAAGGGCCTGTCCATCGTG
GACTTGGTGGCACTGACGGGCTCTCACACCATTGGCGTGTCACGCTGCGCCAGCTTCCGGCAGCGCCTCTACAACTTTGCGGGAACTCGTCGGCCAGATCCGAGCATCGACCCGGCGCTC
CTCCGCAGCCTCGAGCACATTTGTCCTCCCAAAGGCAACGCGCAGGAGACGACGCCTCTGGACATCGTCACTCCCACCAAGTTTGACAATCACTTCTTCGTCGATCTGGAGCTTCACAAG
GGTGTTCTTACGTCGGACCAGGTGCTGTTTGCGCCGTATGCTCCCACCAGCGCACTGGTTACGGCATTTGCCTACGACCAGGCAAAGTTCTTCCAGGAGTTTGTAGCGTCCATGGTGAGG
ATGGCTGCCATCAAGCCGCTGCTGGGATCGGAGGGCCAGATCAGGAAGGAGTGCCGGTTCGTCAATCACAAGTACTGA

Retrieve as FASTA