Entry information : SmPrx34-1_84 (SmPrx34a_84)
Entry ID 7035
Creation 2009-10-13 (Christophe Dunand)
Last sequence changes 2009-10-13 (Christophe Dunand)
Sequence status complete
Reviewer Paula Nunes
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: SmPrx34-1_84 (SmPrx34a_84)
Name (synonym) SmPrx34-1_84 (SmPrx34a_84)
Class Class III peroxidase    [Orthogroup: Prx078]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmPrx34-1_84
start..stop
S start..stop
SmPrx34-2_131 671 0 1..328 1..328
SmPrx36-1_2 427 1e-150 16..328 66..375
SmPrx36-2_44 427 1e-150 16..328 66..375
CmichPrx01 392 5e-137 10..328 39..361
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 146451..146663 213 N° 2 146200..146391 192 N° 3 145555..146136 582  
complement(join(145555..146136,146200..146391,146451..146663))


exon

Literature and cross-references SmPrx34-1_84 (SmPrx34a_84)
DNA ref. Phytozome 12:   scaffold_84 (146663..145555)
mRNA ref. JGI transcript:   425550   235370 [Incorrect splicing]
Protein sequence: SmPrx34-1_84 (SmPrx34a_84)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   328 (304)
PWM (Da):   %s   35522.22 (33046.9) Transmb domain:   %s   i5-27o
PI (pH):   %s   8.9 (9.31) Peptide Signal:   %s   cut: 25 range:25-328
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MSMVVVLLLLLPCALLCLFSCAAAQLTPDFYDKSCPTLIPTVRAVLQKAIAKEPRIAASLLRLHFHDCFVNGCDASLLLDDTPSFTGEKGAVPNNRSARGFRVVDRAKFAVEKSCPGVVSCADILAILARESVVLLDGPSWAVQLGRRDSTTANRSAANNEIPPPNSTLANLLSKFQAKGLNAQELVALSGSHTIGLSRCVSFRDRLYNFSGSGRPDSTLQPHFWEDLRAKCPRFHGNNVVAPLDAHTPLHFDNLYYHNLHASVGLLNSDQVLYSTSGPNSTRAIVTRYRDDQGAFFADFASAMVKMGNISPLTGTSGQIRKKCRRVN*

Retrieve as FASTA  
Remarks Complete sequence from genomic (introns 1 and 2). No EST.
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCGATGGTGGTGGTGCTGCTGCTGCTGCTGCCTTGCGCGTTACTGTGCTTGTTCTCTTGTGCGGCAGCGCAGCTCACTCCAGATTTCTACGACAAATCCTGCCCAACCTTGATCCCC
ACTGTTCGTGCCGTGCTCCAGAAAGCCATCGCCAAGGAGCCCCGGATCGCTGCGTCGCTGCTACGCTTGCATTTCCACGACTGCTTCGTCAAT
GTAAGTGTCTCTTTCGTAGTGCTCAAT
CCTTGGAATATCCATTTCTTCTGTCCATGCAGGGATGCGATGCTTCTTTGCTCTTGGACGACACTCCCAGCTTCACTGGCGAGAAAGGCGCGGTTCCAAACAACCGATCCGCGAGGGGCT
TTCGAGTGGTGGATCGAGCAAAGTTTGCAGTGGAGAAATCGTGCCCGGGAGTGGTATCGTGCGCGGACATTCTCGCCATCCTCGCCCGCGAATCAGTCGTCCTG
GTAAGAATGCCAAGAA
CTTTCTTACACTTCAAACAGTGATCTTTCGATCGATCGGACTAACAGCTGGATGGACCGAGCTGGGCGGTGCAACTGGGCCGCCGCGATAGCACCACCGCCAACCGGAGCGCCGCCAACA
ACGAGATCCCACCACCGAATTCCACGCTCGCGAACCTTCTCTCCAAGTTCCAAGCCAAAGGTCTCAACGCGCAAGAGCTCGTCGCGCTCTCCGGATCCCACACCATCGGCCTCTCCCGCT
GCGTGAGCTTCCGCGATCGCCTCTACAACTTCTCTGGATCCGGGCGCCCCGATTCCACGCTCCAGCCACACTTTTGGGAAGATCTCCGCGCCAAATGCCCGCGTTTCCACGGCAACAACG
TCGTCGCGCCGCTCGACGCCCACACTCCACTCCACTTCGACAATCTCTACTACCACAATCTCCACGCCAGTGTGGGTCTGCTCAACTCCGATCAGGTGCTCTACTCCACTTCCGGGCCGA
ATTCCACGCGCGCCATCGTCACCAGGTACCGCGACGATCAAGGCGCCTTCTTCGCGGATTTCGCTAGCGCCATGGTGAAGATGGGAAACATCAGCCCGCTCACCGGCACCAGCGGCCAGA
TCCGCAAGAAATGCCGCCGAGTCAATTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCGATGGTGGTGGTGCTGCTGCTGCTGCTGCCTTGCGCGTTACTGTGCTTGTTCTCTTGTGCGGCAGCGCAGCTCACTCCAGATTTCTACGACAAATCCTGCCCAACCTTGATCCCC
ACTGTTCGTGCCGTGCTCCAGAAAGCCATCGCCAAGGAGCCCCGGATCGCTGCGTCGCTGCTACGCTTGCATTTCCACGACTGCTTCGTCAAT
GGATGCGATGCTTCTTTGCTCTTGGAC
GACACTCCCAGCTTCACTGGCGAGAAAGGCGCGGTTCCAAACAACCGATCCGCGAGGGGCTTTCGAGTGGTGGATCGAGCAAAGTTTGCAGTGGAGAAATCGTGCCCGGGAGTGGTATCG
TGCGCGGACATTCTCGCCATCCTCGCCCGCGAATCAGTCGTCCTG
CTGGATGGACCGAGCTGGGCGGTGCAACTGGGCCGCCGCGATAGCACCACCGCCAACCGGAGCGCCGCCAACAAC
GAGATCCCACCACCGAATTCCACGCTCGCGAACCTTCTCTCCAAGTTCCAAGCCAAAGGTCTCAACGCGCAAGAGCTCGTCGCGCTCTCCGGATCCCACACCATCGGCCTCTCCCGCTGC
GTGAGCTTCCGCGATCGCCTCTACAACTTCTCTGGATCCGGGCGCCCCGATTCCACGCTCCAGCCACACTTTTGGGAAGATCTCCGCGCCAAATGCCCGCGTTTCCACGGCAACAACGTC
GTCGCGCCGCTCGACGCCCACACTCCACTCCACTTCGACAATCTCTACTACCACAATCTCCACGCCAGTGTGGGTCTGCTCAACTCCGATCAGGTGCTCTACTCCACTTCCGGGCCGAAT
TCCACGCGCGCCATCGTCACCAGGTACCGCGACGATCAAGGCGCCTTCTTCGCGGATTTCGCTAGCGCCATGGTGAAGATGGGAAACATCAGCCCGCTCACCGGCACCAGCGGCCAGATC
CGCAAGAAATGCCGCCGAGTCAATTGA

Retrieve as FASTA