Entry information : SmPrx11-1_35 (SmPrx11a_35)
Entry ID 7042
Creation 2009-10-15 (Paula Nunes)
Last sequence changes 2009-10-15 (Paula Nunes)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: SmPrx11-1_35 (SmPrx11a_35)
Name (synonym) SmPrx11-1_35 (SmPrx11a_35)
Class Class III peroxidase    [Orthogroup: Prx203]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmPrx11-1_35
start..stop
S start..stop
SmPrx11-2_41 672 0 1..332 1..332
SmPrx12-1_113 425 9e-151 14..332 9..326
SmPrx12-2_55 422 2e-149 14..332 9..326
SmPrx52-2_1 373 6e-130 17..332 33..346
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 158798..159034 237 N° 2 159145..159502 358 N° 3 159762..160165 404  
join(158798..159034,159145..159502,159762..160165)


exon

Literature and cross-references SmPrx11-1_35 (SmPrx11a_35)
DNA ref. Phytozome 12:   scaffold_35 (158798..160165)
mRNA ref. JGI transcript:   107369 [Incorrect prediction]
EST ref. GenBank:   FE505430.1 [5' end]   FE505429.1 [3' end]
Protein sequence: SmPrx11-1_35 (SmPrx11a_35)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   332 (299)
PWM (Da):   %s   35625.4 (31740.5)  
PI (pH):   %s   6.11 (5.72) Peptide Signal:   %s   cut: 34 range:34-332
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MDHSLTALSSRWRWSTFLFSAMILAEFFPLSQQLSYDYYDNVCPQAERTVRASISSNLAGDPTAAAALLRLAFHDCQVGGCDASIMLNSQGGITSEMVASKNFGIRRLNLIDNAKAAVDSQCGPGRVSCADIIAMAGRDAVVFAGGPDFRIPMGRLDSTFASNAAADSSLPPTTISVDNFLNLFGSMGMSTEESVAIMGGGHTLGVGHCVNIVNRLYPNAESTLSFVYATRLRVSCPSSDPRFIINATTVQNDFSSLQFDNQYFREATMGLGLFTIDAALASDARTSPIVARFSQNQNSFFNAFASAYAKLTSFNVLTGNRGEVRNNCRFVN

Retrieve as FASTA  
Remarks Complete sequence from genomic (introns 1 and 3) and 2 ESTs. Incorrect prediction (Short SP).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATCACAGCCTAACTGCATTGTCGTCTCGATGGAGGTGGAGCACTTTCCTGTTCTCGGCGATGATCCTGGCGGAGTTCTTCCCCCTGTCCCAGCAACTTTCGTACGATTACTACGAC
AACGTCTGTCCCCAGGCCGAAAGAACTGTGAGAGCTTCGATTTCCAGCAACCTTGCGGGTGATCCCACCGCCGCAGCGGCGCTTCTCAGGCTTGCCTTCCACGACTGCCAAGTTGGA
GTA
AGTTCTTCGCACTGTTCTTTCCTTTCAGTCAGCTGAATTTCTGTTTCTTTCGTTGTCACCACCACCACCGGGAAAATCAAAACTCGTTTCTCTGTTCTCCGGCCCAGGGATGCGACGCTT
CCATCATGCTGAATTCGCAAGGTGGCATCACCAGCGAGATGGTTGCCTCCAAGAACTTTGGAATCCGGCGTCTCAACCTCATTGACAACGCGAAAGCGGCTGTGGACTCGCAATGCGGGC
CTGGCAGAGTTTCTTGTGCTGACATTATCGCCATGGCTGGAAGGGACGCCGTTGTCTTCGCAGGAGGCCCCGACTTTCGAATTCCCATGGGAAGGCTCGACAGCACGTTTGCTAGCAATG
CCGCCGCCGATTCCAGCCTTCCACCGACGACCATCAGCGTTGATAATTTCCTCAACCTCTTTGGATCCATGGGCATGTCCACAGAAGAAAGCGTTGCAATTATGG
GTAAGTTCTTCCAGT
GTTCCTTAGAATTCCCTCTTCCAAAATTCTCATCTCCGTAAGTTCGTTGTCTCATCGGCTCTTAGAGTGGTTCTTTAAGTTCATCGTTCCAAAAGTTTTCATATCGGTAAGTTTCCGCCA
GAGTCCAAGTTTCAAAGTTCTCTGTTCGTCCGTTTCCGAGAGTCTCGATAAAGTTTCCCCGCGAGTGCACGTTTCTTAGTTTCAAGTTTCTCACGGATAAAAAACCTCGTTTCTTACCAA
CCAGGTGGCGGTCATACTCTCGGCGTCGGGCACTGCGTGAACATCGTCAACCGGCTCTATCCCAATGCGGAGTCGACCTTGAGCTTCGTATACGCGACTAGATTGCGAGTGAGCTGCCCG
TCCTCAGATCCCAGATTCATCATCAATGCCACTACTGTCCAGAACGATTTCAGCAGCCTTCAGTTCGACAATCAGTACTTTCGAGAGGCGACAATGGGTCTCGGACTCTTCACCATTGAT
GCAGCGCTGGCCAGTGACGCGAGAACTTCTCCGATAGTGGCCAGGTTCTCTCAGAACCAGAACTCTTTCTTCAATGCCTTCGCAAGTGCTTACGCGAAGCTCACTTCTTTCAACGTACTG
ACTGGAAATCGAGGTGAAGTGAGAAACAACTGCAGATTTGTGAACTAA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATCACAGCCTAACTGCATTGTCGTCTCGATGGAGGTGGAGCACTTTCCTGTTCTCGGCGATGATCCTGGCGGAGTTCTTCCCCCTGTCCCAGCAACTTTCGTACGATTACTACGAC
AACGTCTGTCCCCAGGCCGAAAGAACTGTGAGAGCTTCGATTTCCAGCAACCTTGCGGGTGATCCCACCGCCGCAGCGGCGCTTCTCAGGCTTGCCTTCCACGACTGCCAAGTTGGA
GGA
TGCGACGCTTCCATCATGCTGAATTCGCAAGGTGGCATCACCAGCGAGATGGTTGCCTCCAAGAACTTTGGAATCCGGCGTCTCAACCTCATTGACAACGCGAAAGCGGCTGTGGACTCG
CAATGCGGGCCTGGCAGAGTTTCTTGTGCTGACATTATCGCCATGGCTGGAAGGGACGCCGTTGTCTTCGCAGGAGGCCCCGACTTTCGAATTCCCATGGGAAGGCTCGACAGCACGTTT
GCTAGCAATGCCGCCGCCGATTCCAGCCTTCCACCGACGACCATCAGCGTTGATAATTTCCTCAACCTCTTTGGATCCATGGGCATGTCCACAGAAGAAAGCGTTGCAATTATGG
GTGGC
GGTCATACTCTCGGCGTCGGGCACTGCGTGAACATCGTCAACCGGCTCTATCCCAATGCGGAGTCGACCTTGAGCTTCGTATACGCGACTAGATTGCGAGTGAGCTGCCCGTCCTCAGAT
CCCAGATTCATCATCAATGCCACTACTGTCCAGAACGATTTCAGCAGCCTTCAGTTCGACAATCAGTACTTTCGAGAGGCGACAATGGGTCTCGGACTCTTCACCATTGATGCAGCGCTG
GCCAGTGACGCGAGAACTTCTCCGATAGTGGCCAGGTTCTCTCAGAACCAGAACTCTTTCTTCAATGCCTTCGCAAGTGCTTACGCGAAGCTCACTTCTTTCAACGTACTGACTGGAAAT
CGAGGTGAAGTGAGAAACAACTGCAGATTTGTGAACTAA

Retrieve as FASTA