Entry information : SmPrx72-1_120 (SmPrx72a_120)
Entry ID 7050
Creation 2009-10-18 (Paula Nunes)
Last sequence changes 2009-10-18 (Paula Nunes)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: SmPrx72-1_120 (SmPrx72a_120)
Name (synonym) SmPrx72-1_120 (SmPrx72a_120)
Class Class III peroxidase    [Orthogroup: Prx164]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmPrx72-1_120
start..stop
S start..stop
SmPrx72-2_39 686 0 1..349 1..349
PtaPrx07 313 4e-106 30..343 22..341
PtaPrx23 312 2e-105 30..336 40..352
PsyPrx01 311 7e-105 30..336 37..349
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 96692..96937 246 N° 2 97023..97208 186 N° 3 97284..97452 169 N° 4 97521..97969 449
join(96692..96937,97023..97208,97284..97452,97521..97969)


exon

Literature and cross-references SmPrx72-1_120 (SmPrx72a_120)
DNA ref. Phytozome 12:   scaffold_120 (96692..97969)
mRNA ref. JGI transcript:   186097
EST ref. GenBank:   FE511889.1 [5' end]   FE511890.1 [3' end]
Protein sequence: SmPrx72-1_120 (SmPrx72a_120)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   349 (322)
PWM (Da):   %s   36860.99 (34135.6) Transmb domain:   %s   i13-32o
PI (pH):   %s   4.62 (4.49) Peptide Signal:   %s   cut: 28 range:28-349
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MARGSFCCSTTTVVLLVAAFLPLLCGAQTFPAPAPGLAYGFYNTSCPSAESTVQQMMQSILTSNISEAAGIIRLFFHDCFVQGCDGSLLINATNGELFSIPNLTIRRSAIAIVEQIKARLESACPNTVSCSDILVLAARESVTQAGGPSFPVPTGRRDGTTFASNQTVLSFIPAPSFNFSQLNSSFQTKGLNEADLTALSGAHTIGIAHCSAFIGNLYPNVSSRFNSSFAQTLLQSCPSNTSNNVVNMDLVTPNAFDSQYFSNVLSGSVDFDSDAALLNSTTTQSSVQAFAANQTQFFNQFAVSFIKMSMIEVLTNSSGNIRNVCSVFNSNSSSTISLNSSPENLVEQV

Retrieve as FASTA  
Remarks Complete sequence from genomic (3 introns) and 2 ESTs.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTCGTGGAAGTTTTTGCTGCTCGACCACCACGGTGGTGCTGCTAGTCGCGGCATTCTTGCCGCTGCTGTGTGGAGCTCAAACTTTCCCAGCTCCGGCACCTGGACTGGCCTATGGA
TTCTACAACACCTCCTGTCCCAGCGCCGAGAGCACCGTCCAGCAAATGATGCAGTCCATTCTCACCTCCAACATCTCCGAGGCCGCTGGGATCATCCGGCTCTTCTTCCACGACTGCTTC
GTCCAG
GTTACTCGAGCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTTCTTCCGAGTTGTTCTAGGAACTTTGCTGTGATCGCAGGGATGCGATGGCTCGCTTCTCATCAATGC
TACCAACGGGGAGCTCTTCTCGATCCCGAACTTGACCATTCGTCGCTCTGCTATTGCCATCGTGGAGCAGATCAAGGCGAGATTGGAGTCGGCCTGTCCGAACACTGTCTCTTGCTCGGA
TATACTCGTCTTGGCTGCTCGAGAATCCGTGACCCAG
GTACTAGCAAAGTCCTGTAAGCTCTTCTCGCGCCAAACCTATGTGATCCTTTGCTGTGTTCTTGCCTTCTAAAAGGCTGGAGG
ACCATCGTTTCCTGTTCCAACCGGACGTCGCGACGGCACCACCTTCGCCAGTAACCAGACTGTTCTCAGCTTCATCCCGGCTCCCAGCTTCAACTTCTCACAGCTTAACTCCTCCTTCCA
GACCAAAGGCTTGAACGAAGCGGACTTAACAGCTCTCTCAG
GTAAAGCAAGCTCCAAAACTTCTCTTGGACCGTTCCAAAAACTCTGTCCTCGCTGCCGCTGCTTTCAGGAGCTCACACC
ATCGGAATCGCGCACTGCTCGGCCTTCATTGGGAACCTGTATCCCAACGTCAGCTCCCGTTTCAACTCTTCCTTTGCACAGACCCTGTTGCAGTCCTGCCCAAGCAACACTTCCAACAAC
GTCGTCAACATGGACCTGGTCACCCCGAATGCCTTCGACAGCCAGTACTTCAGCAACGTTCTCTCTGGCTCCGTCGACTTCGACTCGGACGCTGCTCTTCTTAACAGCACCACCACGCAG
AGCAGCGTGCAGGCTTTCGCAGCGAACCAGACCCAGTTCTTCAACCAGTTTGCCGTGAGCTTCATCAAGATGAGCATGATCGAGGTCCTGACCAACTCGAGCGGGAACATTCGCAATGTC
TGCTCGGTCTTCAACTCCAACAGCAGTAGCACTATTAGCCTGAACTCGTCCCCTGAGAACCTTGTCGAGCAAGTGTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTCGTGGAAGTTTTTGCTGCTCGACCACCACGGTGGTGCTGCTAGTCGCGGCATTCTTGCCGCTGCTGTGTGGAGCTCAAACTTTCCCAGCTCCGGCACCTGGACTGGCCTATGGA
TTCTACAACACCTCCTGTCCCAGCGCCGAGAGCACCGTCCAGCAAATGATGCAGTCCATTCTCACCTCCAACATCTCCGAGGCCGCTGGGATCATCCGGCTCTTCTTCCACGACTGCTTC
GTCCAG
GGATGCGATGGCTCGCTTCTCATCAATGCTACCAACGGGGAGCTCTTCTCGATCCCGAACTTGACCATTCGTCGCTCTGCTATTGCCATCGTGGAGCAGATCAAGGCGAGATTG
GAGTCGGCCTGTCCGAACACTGTCTCTTGCTCGGATATACTCGTCTTGGCTGCTCGAGAATCCGTGACCCAG
GCTGGAGGACCATCGTTTCCTGTTCCAACCGGACGTCGCGACGGCACC
ACCTTCGCCAGTAACCAGACTGTTCTCAGCTTCATCCCGGCTCCCAGCTTCAACTTCTCACAGCTTAACTCCTCCTTCCAGACCAAAGGCTTGAACGAAGCGGACTTAACAGCTCTCTCA
G
GAGCTCACACCATCGGAATCGCGCACTGCTCGGCCTTCATTGGGAACCTGTATCCCAACGTCAGCTCCCGTTTCAACTCTTCCTTTGCACAGACCCTGTTGCAGTCCTGCCCAAGCAAC
ACTTCCAACAACGTCGTCAACATGGACCTGGTCACCCCGAATGCCTTCGACAGCCAGTACTTCAGCAACGTTCTCTCTGGCTCCGTCGACTTCGACTCGGACGCTGCTCTTCTTAACAGC
ACCACCACGCAGAGCAGCGTGCAGGCTTTCGCAGCGAACCAGACCCAGTTCTTCAACCAGTTTGCCGTGAGCTTCATCAAGATGAGCATGATCGAGGTCCTGACCAACTCGAGCGGGAAC
ATTCGCAATGTCTGCTCGGTCTTCAACTCCAACAGCAGTAGCACTATTAGCCTGAACTCGTCCCCTGAGAACCTTGTCGAGCAAGTGTGA

Retrieve as FASTA