Entry information : SmPrx38-1_2 (SmPrx38a_2)
Entry ID 7074
Creation 2009-10-19 (Paula Nunes)
Last sequence changes 2009-10-19 (Paula Nunes)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: SmPrx38-1_2 (SmPrx38a_2)
Name (synonym) SmPrx38-1_2 (SmPrx38a_2)
Class Class III peroxidase    [Orthogroup: Prx067]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmPrx38-1_2
start..stop
S start..stop
SmPrx38-2_97 674 0 1..333 1..333
GbPrx69 384 1e-134 3..324 7..323
PabPrx173 379 2e-132 3..327 7..326
PtaPrx100 374 3e-130 3..326 7..325
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1588415..1588618 204 N° 2 1588150..1588341 192 N° 3 1587772..1587937 166 N° 4 1587269..1587708 440
complement(join(1587269..1587708,1587772..1587937,1588150..1588341,1588415..1588 618))


exon

Literature and cross-references SmPrx38-1_2 (SmPrx38a_2)
DNA ref. Phytozome 12:   scaffold_2 (1588618..1587269)
mRNA ref. JGI transcript:   79034
Protein sequence: SmPrx38-1_2 (SmPrx38a_2)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   333 (312)
PWM (Da):   %s   35423.4 (33232.2)  
PI (pH):   %s   4.71 (4.62) Peptide Signal:   %s   cut: 22 range:22-333
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MRCSLLLLFLSLLSLSGLGSSQLSVDFYNRTCPDVDKLVHSAVSAMANQSNVVTPSTLRLLAHDCFVEGCDASILITSTTNNTAERDATENNIPQQAFDTIIQAKKAVEAACPGVVSCADIVVMAARDAVVLAGGPHWEVTKGRRDGLISQASRVPGRLPGADFNVSELIENFAAVNLTADDMVILSGAHTLGFSHCNQFRSRLYSFDGVNGSSDPSVNASYIGSLKVSCPPGETGPGKFTPFDVSSPFVFDNSYYKNLQIGRGLLFADQVLFTDNTTRPLVNEMADSQDDFFAAFVQAMTKMSNISVKTGSDGEIRQSCSSFNAPPNSTTPT

Retrieve as FASTA  
Remarks Complete sequence from genomic (3 introns). no ESTs.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCGCTGCTCGCTCCTCCTCCTCTTCCTTTCCCTGCTCTCCCTTTCGGGTCTCGGATCGTCGCAGCTCTCGGTGGATTTCTACAACAGGACCTGCCCCGATGTAGACAAGCTCGTTCAC
AGCGCGGTCAGCGCGATGGCCAATCAGTCCAACGTAGTCACGCCGTCAACACTCCGGCTGCTTGCTCACGATTGCTTCGTAGAG
GTGAGTCGAGTCCCCCGAGCTCTCGAAAACTCTGGA
CGTTTACTCTACTTCTTCCTTGGTTCTTCTTCCTCAGGGGTGTGACGCATCAATTCTCATAACTTCGACCACCAACAACACCGCCGAGAGGGACGCGACCGAGAACAACATCCCGCAGCA
AGCCTTCGACACCATAATTCAGGCCAAGAAAGCCGTGGAGGCTGCCTGCCCGGGCGTGGTCTCCTGTGCCGACATAGTCGTCATGGCTGCGCGAGACGCCGTAGTACTG
GTAACTCCCAC
CACCTTGCTATGACTCCCTGCTTTTGTTCTTAGGATTCCCTGTTCCATAGCCTGTGGACTTGGTCGTAGTTGCCATAAACTTGCTGATTTGTTACTGAATTCCGACCATTCTCTGTAAGT
TGCTGGCTCAGATTTACCGCTGCTGATTTTCTGCATCGTGATTCTCCGCTTTCTTACTCCTCTAACTCCGTCCTGTTCAAGGCTGGAGGCCCGCACTGGGAAGTCACCAAAGGCCGAAGG
GATGGACTGATATCCCAAGCTTCCAGAGTTCCTGGCAGATTACCTGGAGCAGACTTCAACGTTAGCGAGCTAATAGAAAACTTTGCTGCTGTCAACCTCACCGCTGACGACATGGTGATC
CTCTCAG
GTGCAAATCCTTCGAATAGATCGAGCCATCCGTTTGACAGACAGTGACTTTGTTTCTTCGCAGGAGCGCATACTCTTGGATTTTCTCACTGCAACCAGTTCCGGAGCAGGCTT
TACAGTTTTGATGGAGTAAACGGCAGCAGCGACCCGAGCGTGAACGCGTCTTACATTGGATCGCTCAAAGTGAGCTGTCCACCCGGCGAAACTGGACCTGGAAAATTCACCCCGTTCGAT
GTCAGCTCCCCCTTCGTCTTTGACAACTCTTACTACAAGAACTTGCAGATTGGAAGAGGCCTCCTGTTTGCGGACCAAGTGCTGTTCACCGATAACACCACCAGGCCGCTGGTGAACGAG
ATGGCTGATTCCCAGGACGACTTCTTCGCGGCGTTTGTACAGGCGATGACCAAGATGAGCAACATAAGCGTCAAGACTGGAAGCGACGGGGAAATAAGGCAGAGCTGCAGCAGCTTCAAC
GCCCCACCGAATTCAACCACACCAACTTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCGCTGCTCGCTCCTCCTCCTCTTCCTTTCCCTGCTCTCCCTTTCGGGTCTCGGATCGTCGCAGCTCTCGGTGGATTTCTACAACAGGACCTGCCCCGATGTAGACAAGCTCGTTCAC
AGCGCGGTCAGCGCGATGGCCAATCAGTCCAACGTAGTCACGCCGTCAACACTCCGGCTGCTTGCTCACGATTGCTTCGTAGAG
GGGTGTGACGCATCAATTCTCATAACTTCGACCACC
AACAACACCGCCGAGAGGGACGCGACCGAGAACAACATCCCGCAGCAAGCCTTCGACACCATAATTCAGGCCAAGAAAGCCGTGGAGGCTGCCTGCCCGGGCGTGGTCTCCTGTGCCGAC
ATAGTCGTCATGGCTGCGCGAGACGCCGTAGTACTG
GCTGGAGGCCCGCACTGGGAAGTCACCAAAGGCCGAAGGGATGGACTGATATCCCAAGCTTCCAGAGTTCCTGGCAGATTACCT
GGAGCAGACTTCAACGTTAGCGAGCTAATAGAAAACTTTGCTGCTGTCAACCTCACCGCTGACGACATGGTGATCCTCTCAG
GAGCGCATACTCTTGGATTTTCTCACTGCAACCAGTTC
CGGAGCAGGCTTTACAGTTTTGATGGAGTAAACGGCAGCAGCGACCCGAGCGTGAACGCGTCTTACATTGGATCGCTCAAAGTGAGCTGTCCACCCGGCGAAACTGGACCTGGAAAATTC
ACCCCGTTCGATGTCAGCTCCCCCTTCGTCTTTGACAACTCTTACTACAAGAACTTGCAGATTGGAAGAGGCCTCCTGTTTGCGGACCAAGTGCTGTTCACCGATAACACCACCAGGCCG
CTGGTGAACGAGATGGCTGATTCCCAGGACGACTTCTTCGCGGCGTTTGTACAGGCGATGACCAAGATGAGCAACATAAGCGTCAAGACTGGAAGCGACGGGGAAATAAGGCAGAGCTGC
AGCAGCTTCAACGCCCCACCGAATTCAACCACACCAACTTGA

Retrieve as FASTA