Entry information : SmPrx63-1_19 (SmPrx63a_19)
Entry ID 7099
Creation 2009-10-22 (Paula Nunes)
Last sequence changes 2011-01-26 (Toky Ramarohetra)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2011-01-26 (Toky Ramarohetra)
Peroxidase information: SmPrx63-1_19 (SmPrx63a_19)
Name (synonym) SmPrx63-1_19 (SmPrx63a_19)
Class Class III peroxidase    [Orthogroup: Prx073]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmPrx63-1_19
start..stop
S start..stop
SmPrx64-1_19 555 0 1..308 1..322
SmPrx63-2_18 538 0 1..308 1..320
SmPrx64-2_18 531 0 1..308 40..359
SmPrx102-1_50 496 2e-179 15..308 23..314
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 2220571..2220794 224 N° 2 2220362..2220520 159 N° 3 2219762..2220301 540  
complement(join(2219762..2220301,2220362..2220520,2220571..2220794))


exon

Literature and cross-references SmPrx63-1_19 (SmPrx63a_19)
DNA ref. JGI genome:   scaffold_19 (2220796..2219759) [Sequencing error]
mRNA ref. JGI transcript:   97201 [Incorrect prediction]
Protein sequence: SmPrx63-1_19 (SmPrx63a_19)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   308
PWM (Da):   %s   33172.88  
PI (pH):   %s   8.76
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MQRFKYLLLTLTLLRR*XIHQELPLMPSELSTSFYANTCPDFPQIARSVIRSEFANDSRSSASILKLHFRDCFAQGCDGSLLPQVGDGRSTKGLKIINNIKRAVETSCPETVSCADILALSARESVIALGGPSWTVEFGRRDNPSSTSVAAAVDAIPSPNLTATQLNERFQKRGLSKRDLVALSGGHSIGQAQCFTFSARLFNGTTGDSIDPALKSRLEKNCPPTAPNRLNNLDPSPTTFDNLYFRAVQANQSLLFSDQQLLQSDLAGFVKEFADNQKAFCTAFANGMIKMGRLSPLTGGHGEIRASC

Retrieve as FASTA  
Remarks Complete sequence from genomic (introns 1 and 2). Incorrect prediction from JGI (short PS is missing). No EST.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGCAGCGATTTAAATATCTACTCCTCACGTTAACTCTGCTGCGGCGCTAGTANATTCACCAGGAATTACCACTGATGCCCTCAGAGCTGTCCACTTCTTTCTACGCTAATACTTGTCCCG
ACTTCCCCCAGATAGCTAGAAGCGTGATTCGCTCTGAGTTTGCCAATGACAGCCGATCCTCTGCATCCATCCTCAAGCTCCACTTCCGTGATTGCTTTGCTCAA
GTAAGTACTCCAATAA
GTCCCCGTTACTCATTTATTTGGCTGTCGCTCAGGGCTGTGACGGATCGCTGCTCCCCCAGGTAGGAGATGGACGCTCCACCAAGGGACTCAAAATCATCAACAATATCAAGCGCGCCGT
GGAGACTTCATGCCCGGAAACTGTATCATGCGCCGACATTCTTGCTCTGAGCGCCCGGGAATCCGTCATAGCC
GTAAGTGAGGTCTCCATTGATTTGAGTTACAAATGCTTTCTTCTCTT
TCGAATTTTGCAGCTTGGTGGCCCGTCATGGACAGTAGAGTTTGGCCGACGGGACAATCCCAGCTCCACGAGCGTCGCTGCCGCGGTGGACGCCATTCCCAGCCCAAATCTCACCGCAAC
GCAGCTCAATGAGAGATTCCAAAAGCGGGGCCTTTCCAAGCGTGATCTCGTAGCGCTCTCAGGAGGCCATTCCATCGGCCAGGCCCAGTGCTTCACATTTAGCGCCCGCCTCTTCAACGG
AACCACAGGGGATAGCATCGATCCGGCCCTCAAGTCCCGACTCGAGAAGAATTGCCCTCCAACAGCCCCAAACAGATTGAACAATTTGGATCCCTCCCCCACCACGTTCGACAACTTGTA
CTTTCGAGCTGTCCAAGCGAATCAGTCGCTCCTCTTCTCAGACCAGCAGCTGTTGCAGAGTGATCTGGCGGGCTTTGTCAAGGAGTTTGCGGACAATCAGAAGGCATTTTGTACTGCCTT
CGCCAATGGCATGATCAAAATGGGTAGGCTCTCGCCTCTCACGGGAGGACATGGTGAAATTCGAGCCTCGTGC

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGCAGCGATTTAAATATCTACTCCTCACGTTAACTCTGCTGCGGCGCTAGTANATTCACCAGGAATTACCACTGATGCCCTCAGAGCTGTCCACTTCTTTCTACGCTAATACTTGTCCCG
ACTTCCCCCAGATAGCTAGAAGCGTGATTCGCTCTGAGTTTGCCAATGACAGCCGATCCTCTGCATCCATCCTCAAGCTCCACTTCCGTGATTGCTTTGCTCAA
GGCTGTGACGGATCGC
TGCTCCCCCAGGTAGGAGATGGACGCTCCACCAAGGGACTCAAAATCATCAACAATATCAAGCGCGCCGTGGAGACTTCATGCCCGGAAACTGTATCATGCGCCGACATTCTTGCTCTGA
GCGCCCGGGAATCCGTCATAGCC
CTTGGTGGCCCGTCATGGACAGTAGAGTTTGGCCGACGGGACAATCCCAGCTCCACGAGCGTCGCTGCCGCGGTGGACGCCATTCCCAGCCCAAATC
TCACCGCAACGCAGCTCAATGAGAGATTCCAAAAGCGGGGCCTTTCCAAGCGTGATCTCGTAGCGCTCTCAGGAGGCCATTCCATCGGCCAGGCCCAGTGCTTCACATTTAGCGCCCGCC
TCTTCAACGGAACCACAGGGGATAGCATCGATCCGGCCCTCAAGTCCCGACTCGAGAAGAATTGCCCTCCAACAGCCCCAAACAGATTGAACAATTTGGATCCCTCCCCCACCACGTTCG
ACAACTTGTACTTTCGAGCTGTCCAAGCGAATCAGTCGCTCCTCTTCTCAGACCAGCAGCTGTTGCAGAGTGATCTGGCGGGCTTTGTCAAGGAGTTTGCGGACAATCAGAAGGCATTTT
GTACTGCCTTCGCCAATGGCATGATCAAAATGGGTAGGCTCTCGCCTCTCACGGGAGGACATGGTGAAATTCGAGCCTCGTGC

Retrieve as FASTA