Entry information : SmPrx93-2_26 (SmPrx93b_26)
Entry ID 7110
Creation 2009-10-23 (Paula Nunes)
Last sequence changes 2009-10-23 (Paula Nunes)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: SmPrx93-2_26 (SmPrx93b_26)
Name (synonym) SmPrx93-2_26 (SmPrx93b_26)
Class Class III peroxidase    [Orthogroup: Prx077]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmPrx93-2_26
start..stop
S start..stop
SmPrx89-1_24 638 0 1..318 1..318
SmPrx107-1_48 632 0 1..318 1..318
SmPrx89-2_26 629 0 1..318 1..318
SmPrx92-1_24 627 0 1..318 1..318
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1958069..1958272 204 N° 2 1957825..1958007 183 N° 3 1957186..1957755 570  
complement(join(1957186..1957755,1957825..1958007,1958069..1958272))


exon

Literature and cross-references SmPrx93-2_26 (SmPrx93b_26)
DNA ref. Phytozome 12:   scaffold_26 (1958272..1957186)
mRNA ref. JGI transcript:   102685 [Incorrect splicing]
Protein sequence: SmPrx93-2_26 (SmPrx93b_26)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   318 (298)
PWM (Da):   %s   33842.71 (31805.6)  
PI (pH):   %s   7.99 (7.98) Peptide Signal:   %s   cut: 21 range:21-318
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAIMSFVLVLLLALHGSALGQTLSSSFYRSSCPNLTTIVRAAVQQAVQAEARIAASFVRLHFHDCFVNGCDASILLDGANLEQNAFPNAGSARGFDIVDSIKSSVESSCPGVVSCADLLALIARDSVVALNGPSWTVVFGRRDSLTASQSAANANLPPPTLNASALIASFRNQGLSTTDMVALSGAHTIGQARCTTFKARLYGPFQRGDQMDQSFNTSLQSSCPSSNGDTNLSPLDVQTPTSFDNRYFRNLQNRRGLLFSDQTLFSGDQASTRNLVNSYASSQSTFFQDFGNAMVRMGNINVLTGSNGEIRRNCGRTN*

Retrieve as FASTA  
Remarks Complete sequence from genomic (introns 1 and 2). No EST. Incorrect transcript prediction from JGI (short PS is missing: 3 aa).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGATCATGTCCTTTGTGCTTGTGTTGTTGCTGGCTCTGCATGGAAGTGCTCTTGGCCAAACTTTGAGCTCCAGCTTCTACCGCTCCTCGTGCCCAAATCTCACCACCATCGTGAGA
GCTGCAGTGCAGCAGGCCGTCCAGGCAGAGGCTCGAATTGCAGCCTCGTTTGTTCGCCTCCATTTCCACGACTGCTTTGTCAAT
GTAGAAATCTTTCATAAGTTTCATTCAAGCATATTG
AAAGAACCATGCATTTGTCTTGCAGGGATGCGATGCTTCCATTCTTCTCGACGGCGCAAACCTGGAGCAAAACGCGTTTCCAAACGCTGGCTCCGCCCGTGGCTTCGACATCGTCGACTC
CATCAAGAGCTCCGTCGAGAGCTCCTGCCCGGGTGTTGTCTCCTGCGCTGACTTACTGGCGCTCATTGCCCGGGACTCCGTAGTCGCG
GTAAACTCTCAAAGTCAACGGTCAAAAGCTTA
CAATGTCAACGCTTTTCGTTTTGTGGTGTTTTTACAGCTGAACGGGCCTTCGTGGACGGTGGTGTTTGGAAGGAGGGATAGCTTAACAGCAAGCCAATCTGCCGCAAATGCCAACCTTCC
TCCTCCAACTTTGAATGCCTCAGCGCTCATCGCGAGTTTTCGAAACCAGGGGCTTTCAACCACAGATATGGTGGCTCTCTCCGGGGCTCACACCATTGGGCAGGCCCGGTGCACCACCTT
TAAGGCTCGGCTCTACGGGCCCTTCCAAAGAGGTGACCAGATGGATCAAAGTTTTAACACCTCGTTGCAAAGCTCGTGCCCGAGCAGCAATGGCGACACCAATCTCTCGCCACTCGACGT
CCAGACGCCCACCAGCTTTGACAATCGCTACTTTAGGAACTTGCAGAATCGGAGAGGGTTGCTTTTCTCGGACCAAACGCTCTTTTCCGGGGACCAGGCCAGCACGAGGAATCTCGTCAA
CTCATACGCTTCGAGCCAGAGCACTTTCTTCCAGGACTTTGGCAATGCAATGGTAAGGATGGGCAATATAAATGTGTTGACTGGATCCAATGGAGAGATTCGAAGAAACTGTGGAAGAAC
AAACTAG

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGATCATGTCCTTTGTGCTTGTGTTGTTGCTGGCTCTGCATGGAAGTGCTCTTGGCCAAACTTTGAGCTCCAGCTTCTACCGCTCCTCGTGCCCAAATCTCACCACCATCGTGAGA
GCTGCAGTGCAGCAGGCCGTCCAGGCAGAGGCTCGAATTGCAGCCTCGTTTGTTCGCCTCCATTTCCACGACTGCTTTGTCAAT
GGATGCGATGCTTCCATTCTTCTCGACGGCGCAAAC
CTGGAGCAAAACGCGTTTCCAAACGCTGGCTCCGCCCGTGGCTTCGACATCGTCGACTCCATCAAGAGCTCCGTCGAGAGCTCCTGCCCGGGTGTTGTCTCCTGCGCTGACTTACTGGCG
CTCATTGCCCGGGACTCCGTAGTCGCG
CTGAACGGGCCTTCGTGGACGGTGGTGTTTGGAAGGAGGGATAGCTTAACAGCAAGCCAATCTGCCGCAAATGCCAACCTTCCTCCTCCAACT
TTGAATGCCTCAGCGCTCATCGCGAGTTTTCGAAACCAGGGGCTTTCAACCACAGATATGGTGGCTCTCTCCGGGGCTCACACCATTGGGCAGGCCCGGTGCACCACCTTTAAGGCTCGG
CTCTACGGGCCCTTCCAAAGAGGTGACCAGATGGATCAAAGTTTTAACACCTCGTTGCAAAGCTCGTGCCCGAGCAGCAATGGCGACACCAATCTCTCGCCACTCGACGTCCAGACGCCC
ACCAGCTTTGACAATCGCTACTTTAGGAACTTGCAGAATCGGAGAGGGTTGCTTTTCTCGGACCAAACGCTCTTTTCCGGGGACCAGGCCAGCACGAGGAATCTCGTCAACTCATACGCT
TCGAGCCAGAGCACTTTCTTCCAGGACTTTGGCAATGCAATGGTAAGGATGGGCAATATAAATGTGTTGACTGGATCCAATGGAGAGATTCGAAGAAACTGTGGAAGAACAAACTAG

Retrieve as FASTA