Entry information : SmPrx103-2_90 (SmPrx103b_90)
Entry ID 7119
Creation 2009-10-30 (Christophe Dunand)
Last sequence changes 2011-01-26 (Toky Ramarohetra)
Sequence status complete
Reviewer Paula Nunes
Last annotation changes 2011-01-26 (Toky Ramarohetra)
Peroxidase information: SmPrx103-2_90 (SmPrx103b_90)
Name (synonym) SmPrx103-2_90 (SmPrx103b_90)
Class Class III peroxidase    [Orthogroup: Prx163]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmPrx103-2_90
start..stop
S start..stop
SmPrx103-1_73 606 0 1..325 1..326
SmPrx73-2_39 457 3e-163 25..324 25..324
SmPrx73-1_120 456 3e-163 25..324 25..324
MpPrx179 376 3e-131 3..322 9..328
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 490859..491068 210 N° 2 490619..490810 192 N° 3 490397..490562 166 N° 4 489924..490333 410
complement(join(489924..490333,490397..490562,490619..490810,490859..491068))


exon

Literature and cross-references SmPrx103-2_90 (SmPrx103b_90)
DNA ref. Phytozome 12:   scaffold_90 (491068..489924)
mRNA ref. JGI transcript:   128463 [Incorrect splicing]
Protein sequence: SmPrx103-2_90 (SmPrx103b_90)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   325 (302)
PWM (Da):   %s   34340.92 (31675.6) Transmb domain:   %s   o4-21i
PI (pH):   %s   7.64 (7.24) Peptide Signal:   %s   cut: 24 range:24-325
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MTSVGFVLMSYVFFFFFLSVGRCQLQTGFYASSCPNAESIVKSEVSKATQQDSRLPASLIRLHFHDCFVQGCDASVLLDDTSSFTGEKTAGPNNNSLRGFEVIDTIKTSLESSCKGVVSCADILAIAARDSSVITGGPSWDVRLGRRDSTTASLSGANSQIPSPAFTVNQLISAFTAKGLSAEDMFTLSGAHTIGQAKCSSFSGRLFNNSGSGQPDPSIRQGFLKSLQSACPQGGDATALQPLDVATATTFDNQYYSNLLLGRGLLNSDQVLSTTVGTARNFVKAYSSDQSKFFSNFAGSMINMGNISPLTTPNGIIRSNCRVPS

Retrieve as FASTA  
Remarks Complete sequence from genomic (3 introns). No EST. Incorrect transcript prediction from JGI (short PS is missing, incorrect splicing of intron 2 and no prediction intron 3).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGACTTCGGTGGGATTTGTCCTCATGTCTTACGTCTTCTTCTTCTTCTTCTTGTCCGTGGGGCGATGCCAGCTTCAAACGGGCTTCTATGCGTCTTCATGCCCAAACGCTGAATCCATA
GTCAAGTCGGAGGTTTCCAAAGCGACGCAGCAGGACTCGAGATTGCCGGCGTCGTTGATAAGGCTCCATTTCCATGATTGCTTTGTTCAA
GTGAGTGCCACTGGTCAATTCGTTGAATCA
GTATTTTTTGTTCCTCAGGGGTGTGATGCATCGGTGCTGCTGGATGATACGTCGAGTTTTACTGGGGAGAAGACTGCCGGTCCAAACAACAATTCACTCCGAGGCTTCGAGGTCATCGAC
ACGATCAAAACGTCTCTGGAGAGCAGCTGCAAGGGAGTCGTGTCGTGCGCAGACATCCTCGCCATTGCGGCTCGTGATTCCAGTGTCATC
GTAAGCGAATTTATCTCTCGTATTGGGATC
AATATATGATTCGCAAGCTTTTGCAGACGGGAGGACCTTCTTGGGATGTGAGGCTGGGGCGTCGAGACAGTACCACGGCCAGCCTGAGCGGAGCTAATTCACAGATTCCATCCCCTGCTT
TCACCGTTAATCAGCTCATATCCGCATTCACGGCCAAAGGCCTGTCAGCGGAGGACATGTTCACCCTCTCAG
GCAAGTGCAAGCTCATTAGAGTCGCATCAGGATCTTATGGAAACGGCA
TCTATGGATATGCAGGGGCTCACACAATCGGGCAGGCTAAGTGCAGCAGCTTCAGCGGCCGACTGTTCAACAACAGTGGCAGCGGGCAACCGGACCCAAGCATCAGGCAGGGATTCTTGA
AGTCTCTTCAGTCGGCATGTCCTCAAGGGGGGGACGCCACCGCGCTACAGCCTCTGGACGTGGCAACCGCCACCACCTTTGATAACCAGTACTACTCCAACCTCCTCCTGGGCAGGGGCT
TGCTTAACTCGGACCAGGTCCTCTCTACCACCGTCGGGACTGCCAGGAACTTTGTCAAGGCCTACAGCTCCGACCAGTCCAAGTTCTTCAGCAACTTCGCGGGATCCATGATCAACATGG
GGAACATCAGCCCCCTCACCACGCCCAATGGAATCATCCGCTCAAACTGCCGGGTCCCCAGCTAG

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGACTTCGGTGGGATTTGTCCTCATGTCTTACGTCTTCTTCTTCTTCTTCTTGTCCGTGGGGCGATGCCAGCTTCAAACGGGCTTCTATGCGTCTTCATGCCCAAACGCTGAATCCATA
GTCAAGTCGGAGGTTTCCAAAGCGACGCAGCAGGACTCGAGATTGCCGGCGTCGTTGATAAGGCTCCATTTCCATGATTGCTTTGTTCAA
GGGTGTGATGCATCGGTGCTGCTGGATGAT
ACGTCGAGTTTTACTGGGGAGAAGACTGCCGGTCCAAACAACAATTCACTCCGAGGCTTCGAGGTCATCGACACGATCAAAACGTCTCTGGAGAGCAGCTGCAAGGGAGTCGTGTCGTGC
GCAGACATCCTCGCCATTGCGGCTCGTGATTCCAGTGTCATC
ACGGGAGGACCTTCTTGGGATGTGAGGCTGGGGCGTCGAGACAGTACCACGGCCAGCCTGAGCGGAGCTAATTCACAG
ATTCCATCCCCTGCTTTCACCGTTAATCAGCTCATATCCGCATTCACGGCCAAAGGCCTGTCAGCGGAGGACATGTTCACCCTCTCAG
GGGCTCACACAATCGGGCAGGCTAAGTGCAGC
AGCTTCAGCGGCCGACTGTTCAACAACAGTGGCAGCGGGCAACCGGACCCAAGCATCAGGCAGGGATTCTTGAAGTCTCTTCAGTCGGCATGTCCTCAAGGGGGGGACGCCACCGCGCTA
CAGCCTCTGGACGTGGCAACCGCCACCACCTTTGATAACCAGTACTACTCCAACCTCCTCCTGGGCAGGGGCTTGCTTAACTCGGACCAGGTCCTCTCTACCACCGTCGGGACTGCCAGG
AACTTTGTCAAGGCCTACAGCTCCGACCAGTCCAAGTTCTTCAGCAACTTCGCGGGATCCATGATCAACATGGGGAACATCAGCCCCCTCACCACGCCCAATGGAATCATCCGCTCAAAC
TGCCGGGTCCCCAGCTAG

Retrieve as FASTA